Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:24:21 (838246): wrapper (7.7.26015): starting
23:24:21 (838246): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 23:24:21] Arguments: --nthreads 4
[2026-01-09 23:24:21] Threads: 4
[2026-01-09 23:24:21] Checking for CVMFS
[2026-01-09 23:24:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:24:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:24:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:24:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:24:21] 2.9.2.0 211398 2123 88728 154959 1 57 36556853 36864000 0 130560 0 1607676 99.989 81201 3950 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 23:24:21] CVMFS is ok
[2026-01-09 23:24:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:24:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:24:21] Further information can be found at the LHC@home message board.
[2026-01-09 23:24:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:24:21] Checking for apptainer binary...
[2026-01-09 23:24:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:24:21] Running /usr/bin/apptainer --version
[2026-01-09 23:24:21] apptainer version 1.4.1-1.1
[2026-01-09 23:24:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:24:22] thA381
[2026-01-09 23:24:22] apptainer works
[2026-01-09 23:24:22] Set ATHENA_PROC_NUMBER=4
[2026-01-09 23:24:22] Set ATHENA_CORE_NUMBER=4
[2026-01-09 23:24:22] Starting ATLAS job with PandaID=6963162319
[2026-01-09 23:24:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:05:49]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | job 6963162319 has completed (purged errors)
[2026-01-10 01:05:49] 2026-01-10 00:05:17,072 | INFO     | overall cleanup function is called
[2026-01-10 01:05:49] 2026-01-10 00:05:18,079 | INFO     | --- collectZombieJob: --- 10, [848586]
[2026-01-10 01:05:49] 2026-01-10 00:05:18,079 | INFO     | zombie collector waiting for pid 848586
[2026-01-10 01:05:49] 2026-01-10 00:05:18,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:05:49] 2026-01-10 00:05:18,079 | INFO     | collected zombie processes
[2026-01-10 01:05:49] 2026-01-10 00:05:18,079 | INFO     | will attempt to kill all subprocesses of pid=848586
[2026-01-10 01:05:49] 2026-01-10 00:05:18,125 | INFO     | process IDs to be killed: [848586] (in reverse order)
[2026-01-10 01:05:49] 2026-01-10 00:05:18,158 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:05:49] 2026-01-10 00:05:18,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:05:49] 2026-01-10 00:05:18,160 | INFO     | did not find any defunct processes belonging to 848586
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | did not find any defunct processes belonging to 848586
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | ready for new job
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | ***************************************
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:05:49] 2026-01-10 00:05:18,162 | INFO     | ***************************************
[2026-01-10 01:05:49] 2026-01-10 00:05:18,163 | INFO     | 
[2026-01-10 01:05:49] 2026-01-10 00:05:18,163 | INFO     | architecture information:
[2026-01-10 01:05:49] 2026-01-10 00:05:18,163 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:05:49] 2026-01-10 00:05:18,177 | INFO     | cat /etc/os-release:
[2026-01-10 01:05:49] NAME="CentOS Linux"
[2026-01-10 01:05:49] VERSION="7 (Core)"
[2026-01-10 01:05:49] ID="centos"
[2026-01-10 01:05:49] ID_LIKE="rhel fedora"
[2026-01-10 01:05:49] VERSION_ID="7"
[2026-01-10 01:05:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:05:49] ANSI_COLOR="0;31"
[2026-01-10 01:05:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:05:49] HOME_URL="https://www.centos.org/"
[2026-01-10 01:05:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:05:49] 
[2026-01-10 01:05:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:05:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:05:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:05:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:05:49] 
[2026-01-10 01:05:49] 2026-01-10 00:05:18,177 | INFO     | ***************************************
[2026-01-10 01:05:49] 2026-01-10 00:05:18,681 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 01:05:49] 2026-01-10 00:05:18,698 | INFO     | sufficient remaining disk space (223699009536 B)
[2026-01-10 01:05:49] 2026-01-10 00:05:18,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:05:49] 2026-01-10 00:05:18,698 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:05:49] 2026-01-10 00:05:18,698 | INFO     | update_server=False
[2026-01-10 01:05:49] 2026-01-10 00:05:18,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:05:49] 2026-01-10 00:05:18,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:05:49] 2026-01-10 00:05:18,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:05:49] 2026-01-10 00:05:18,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:05:49] 2026-01-10 00:05:18,699 | INFO     | aborting loop
[2026-01-10 01:05:49] 2026-01-10 00:05:18,778 | INFO     | all data control threads have been joined
[2026-01-10 01:05:49] 2026-01-10 00:05:18,786 | INFO     | all job control threads have been joined
[2026-01-10 01:05:49] 2026-01-10 00:05:19,704 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:19,704 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:19,704 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:19,784 | INFO     | [data] control thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:19,791 | INFO     | [job] control thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:19,950 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:20,010 | INFO     | all payload control threads have been joined
[2026-01-10 01:05:49] 2026-01-10 00:05:20,081 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:20,580 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:20,704 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,003 | INFO     | [job] validate thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,003 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,015 | INFO     | [payload] control thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,056 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,193 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:21,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:05:49] 2026-01-10 00:05:25,235 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:28,916 | INFO     | job.realtimelogging is not enabled
[2026-01-10 01:05:49] 2026-01-10 00:05:29,921 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:05:49] 2026-01-10 00:05:37,457 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:05:49] 2026-01-10 00:05:39,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366526060352)>', '<ExcThread(monitor, started 140365730391808)>']
[2026-01-10 01:05:49] 2026-01-10 00:05:44,267 | INFO     | all workflow threads have been joined
[2026-01-10 01:05:49] 2026-01-10 00:05:44,267 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:05:49] 2026-01-10 00:05:44,267 | INFO     | traces error code: 0
[2026-01-10 01:05:49] 2026-01-10 00:05:44,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:05:49] 2026-01-10 00:05:49,710 | INFO     | PID=842026 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 01:05:49] 2026-01-10 00:05:49,711 | INFO     | [monitor] control thread has ended
[2026-01-10 01:05:49] 2026-01-10 00:05:49,788 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:05:49] 2026-01-10 00:05:49,792 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:05:49] 2026-01-10 00:05:49,797 [wrapper] pilotpid: 842026
[2026-01-10 01:05:49] 2026-01-10 00:05:49,801 [wrapper] Pilot exit status: 0
[2026-01-10 01:05:49] 2026-01-10 00:05:49,813 [wrapper] pandaids: 6963162319
[2026-01-10 01:05:49] 2026-01-10 00:05:49,836 [wrapper] cleanup supervisor_pilot  860927 842027
[2026-01-10 01:05:49] 2026-01-10 00:05:49,840 [wrapper] Test setup, not cleaning
[2026-01-10 01:05:49] 2026-01-10 00:05:49,844 [wrapper] apfmon messages muted
[2026-01-10 01:05:49] 2026-01-10 00:05:49,848 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:05:49] 2026-01-10 00:05:49,851 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:05:49]  *** Error codes and diagnostics ***
[2026-01-10 01:05:49]     "exeErrorCode": 0,
[2026-01-10 01:05:49]     "exeErrorDiag": "",
[2026-01-10 01:05:49]     "pilotErrorCode": 0,
[2026-01-10 01:05:49]     "pilotErrorDiag": "",
[2026-01-10 01:05:49]  *** Listing of results directory ***
[2026-01-10 01:05:49] total 441900
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 01:05:49] -rwx------ 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc       100 Jan  9 23:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:05:49] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 23:24 run_atlas
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc       105 Jan  9 23:24 job.xml
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc 226772031 Jan  9 23:24 EVNT.47898824._001293.pool.root.1
[2026-01-10 01:05:49] drwxrwx--x 2 boinc boinc      4096 Jan  9 23:24 shared
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc    592396 Jan  9 23:24 input.tar.gz
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:24 start_atlas.sh
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:24 boinc_setup_complete
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc      6376 Jan  9 23:24 init_data.xml
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:24 boinc_lockfile
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc      2519 Jan  9 23:24 pandaJob.out
[2026-01-10 01:05:49] -rw------- 1 boinc boinc    989375 Jan  9 23:24 agis_schedconf.cvmfs.json
[2026-01-10 01:05:49] -rw------- 1 boinc boinc   1516240 Jan  9 23:24 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:05:49] drwx------ 5 boinc boinc      4096 Jan  9 23:24 pilot3
[2026-01-10 01:05:49] -rw------- 1 boinc boinc 219501091 Jan 10 01:04 HITS.47898826._033940.pool.root.1
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc       529 Jan 10 01:05 boinc_task_state.xml
[2026-01-10 01:05:49] -rw------- 1 boinc boinc        95 Jan 10 01:05 pilot_heartbeat.json
[2026-01-10 01:05:49] -rw------- 1 boinc boinc      1017 Jan 10 01:05 memory_monitor_summary.json
[2026-01-10 01:05:49] -rw------- 1 boinc boinc    290521 Jan 10 01:05 log.47898826._033940.job.log.tgz.1
[2026-01-10 01:05:49] -rw------- 1 boinc boinc      7761 Jan 10 01:05 heartbeat.json
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc        27 Jan 10 01:05 wrapper_checkpoint.txt
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc      8192 Jan 10 01:05 boinc_mmap_file
[2026-01-10 01:05:49] -rw------- 1 boinc boinc       816 Jan 10 01:05 pilotlog.txt
[2026-01-10 01:05:49] -rw------- 1 boinc boinc    875601 Jan 10 01:05 log.47898826._033940.job.log.1
[2026-01-10 01:05:49] -rw------- 1 boinc boinc       357 Jan 10 01:05 output.list
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc       620 Jan 10 01:05 runtime_log
[2026-01-10 01:05:49] -rw------- 1 boinc boinc   1187840 Jan 10 01:05 result.tar.gz
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc      8897 Jan 10 01:05 runtime_log.err
[2026-01-10 01:05:49] -rw------- 1 boinc boinc       659 Jan 10 01:05 Vr4KDmz3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQflKDmxU55fm.diag
[2026-01-10 01:05:49] -rw-r--r-- 1 boinc boinc     11794 Jan 10 01:05 stderr.txt
[2026-01-10 01:05:49] HITS file was successfully produced:
[2026-01-10 01:05:49] -rw------- 1 boinc boinc 219501091 Jan 10 01:04 shared/HITS.pool.root.1
[2026-01-10 01:05:49]  *** Contents of shared directory: ***
[2026-01-10 01:05:49] total 437584
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc 226772031 Jan  9 23:24 ATLAS.root_0
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc    592396 Jan  9 23:24 input.tar.gz
[2026-01-10 01:05:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:24 start_atlas.sh
[2026-01-10 01:05:49] -rw------- 1 boinc boinc 219501091 Jan 10 01:04 HITS.pool.root.1
[2026-01-10 01:05:49] -rw------- 1 boinc boinc   1187840 Jan 10 01:05 result.tar.gz
01:05:51 (838246): run_atlas exited; CPU time 23179.174491
01:05:51 (838246): called boinc_finish(0)

</stderr_txt>
]]>

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