Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:33:21 (20614): wrapper (7.7.26015): starting
08:33:21 (20614): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:33:21] Arguments: --nthreads 8
[2026-01-09 08:33:21] Threads: 8
[2026-01-09 08:33:21] Checking for CVMFS
[2026-01-09 08:33:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:33:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:33:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:33:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:33:21] 2.11.2.0 1632 29571 104584 154945 3 188 14563190 18432000 965 130560 0 6576732 99.985 930535 44163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 08:33:21] CVMFS is ok
[2026-01-09 08:33:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 08:33:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 08:33:21] Further information can be found at the LHC@home message board.
[2026-01-09 08:33:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:33:21] Checking for apptainer binary...
[2026-01-09 08:33:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:33:21] Running /usr/bin/apptainer --version
[2026-01-09 08:33:21] apptainer version 1.3.2-1.el7
[2026-01-09 08:33:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:33:22] c-206-1.aglt2.org
[2026-01-09 08:33:22] apptainer works
[2026-01-09 08:33:22] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:33:22] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:33:22] Starting ATLAS job with PandaID=6963161284
[2026-01-09 08:33:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:20:03 (20614): BOINC client no longer exists - exiting
10:20:03 (20614): timer handler: client dead, exiting
10:30:26 (7455): wrapper (7.7.26015): starting
10:30:26 (7455): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:30:26] Arguments: --nthreads 8
[2026-01-09 10:30:26] Threads: 8
[2026-01-09 10:30:26] This job has been restarted, cleaning up previous attempt
[2026-01-09 10:30:26] Checking for CVMFS
[2026-01-09 10:30:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:30:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:30:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:30:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:30:26] 2.11.2.0 1632 29688 103288 154948 2 11 14577483 18432000 1 130560 0 6752604 99.985 934561 44141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 10:30:26] CVMFS is ok
[2026-01-09 10:30:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:30:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:30:26] Further information can be found at the LHC@home message board.
[2026-01-09 10:30:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:30:26] Checking for apptainer binary...
[2026-01-09 10:30:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:30:26] Running /usr/bin/apptainer --version
[2026-01-09 10:30:26] apptainer version 1.3.2-1.el7
[2026-01-09 10:30:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:30:27] c-206-1.aglt2.org
[2026-01-09 10:30:27] apptainer works
[2026-01-09 10:30:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:30:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:30:27] Starting ATLAS job with PandaID=6963161284
[2026-01-09 10:30:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:43:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:43:23] 2026-01-09 19:42:50,088 | INFO     | monitor loop #1082: job 0:6963161284 is in state 'finished'
[2026-01-09 14:43:23] 2026-01-09 19:42:50,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,444 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 14:43:23] 2026-01-09 19:42:50,448 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2026-01-09 14:43:23] 2026-01-09 19:42:50,450 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963161284/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,451 | INFO     | extracted standard info from prmon json
[2026-01-09 14:43:23] 2026-01-09 19:42:50,451 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:43:23] 2026-01-09 19:42:50,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:43:23] 2026-01-09 19:42:50,451 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:43:23] 2026-01-09 19:42:50,451 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:43:23] 2026-01-09 19:42:50,455 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:43:23] 2026-01-09 19:42:50,455 | INFO     | sum of square deviations: 4729621702.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,457 | INFO     | sum of deviations: 14239636931.000006
[2026-01-09 14:43:23] 2026-01-09 19:42:50,457 | INFO     | mean x: 1767980199.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,457 | INFO     | mean y: 2485485.9919354836
[2026-01-09 14:43:23] 2026-01-09 19:42:50,457 | INFO     | intersect: -5320434131.750668
[2026-01-09 14:43:23] 2026-01-09 19:42:50,457 | INFO     | chi2: 2.1176801101611162
[2026-01-09 14:43:23] 2026-01-09 19:42:50,458 | INFO     | sum of square deviations: 4449281562.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,459 | INFO     | sum of deviations: 30115256285.999996
[2026-01-09 14:43:23] 2026-01-09 19:42:50,459 | INFO     | mean x: 1767980047.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,459 | INFO     | mean y: 2493974.7736625513
[2026-01-09 14:43:23] 2026-01-09 19:42:50,459 | INFO     | intersect: -11964195811.432167
[2026-01-09 14:43:23] 2026-01-09 19:42:50,460 | INFO     | chi2: 1.3373082071223288
[2026-01-09 14:43:23] 2026-01-09 19:42:50,460 | INFO     | current chi2=1.3373082071223288 (change=36.85032027709868 %)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,460 | INFO     | sum of square deviations: 4180243959.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,461 | INFO     | sum of deviations: 29146961745.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | mean x: 1767979894.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | mean y: 2493425.831932773
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | intersect: -12324835517.21002
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | chi2: 1.3378607249883765
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | current chi2=1.3378607249883765 (change=-0.041315671518732194 %)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,462 | INFO     | right removable region: 237
[2026-01-09 14:43:23] 2026-01-09 19:42:50,463 | INFO     | sum of square deviations: 4449281562.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,464 | INFO     | sum of deviations: -21686062542.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,464 | INFO     | mean x: 1767980352.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,464 | INFO     | mean y: 2504859.234567901
[2026-01-09 14:43:23] 2026-01-09 19:42:50,464 | INFO     | intersect: 8619746081.717394
[2026-01-09 14:43:23] 2026-01-09 19:42:50,465 | INFO     | chi2: 0.8273168089457987
[2026-01-09 14:43:23] 2026-01-09 19:42:50,465 | INFO     | current chi2=0.8273168089457987 (change=60.93287154296145 %)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,465 | INFO     | sum of square deviations: 4180243959.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,466 | INFO     | sum of deviations: -23421882110.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | mean x: 1767980504.5
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | mean y: 2505821.407563025
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | intersect: 9908490101.572472
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | chi2: 0.8133392048067796
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | current chi2=0.8133392048067796 (change=1.6895104738449593 %)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,467 | INFO     | left removable region: 20
[2026-01-09 14:43:23] 2026-01-09 19:42:50,468 | INFO     | sum of square deviations: 3168461268.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | sum of deviations: -5380050550.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | mean x: 1767980474.0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | mean y: 2513459.668202765
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | intersect: 3004546155.3485975
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | chi2: 0.015995386407165628
[2026-01-09 14:43:23] 2026-01-09 19:42:50,469 | INFO     | current memory leak: -1.70 B/s (using 217 data points, chi2=0.02)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | could have reported an average CPU frequency of 2424 MHz (12 samples)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | ..............................
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | . Timing measurements:
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | . get job = 0 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | . initial setup = 1 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | . payload setup = 6 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,470 | INFO     | . stage-in = 0 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,471 | INFO     | . payload execution = 15095 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,471 | INFO     | . stage-out = 2 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,471 | INFO     | . log creation = 0 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,471 | INFO     | ..............................
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | 
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | job summary report
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | --------------------------------------------------
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | PanDA job id: 6963161284
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | task id: 47898826
[2026-01-09 14:43:23] 2026-01-09 19:42:50,722 | INFO     | errors: (none)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | pilot state: finished 
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | transexitcode: 0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | exeerrorcode: 0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | exeerrordiag: 
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | exitcode: 0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | exitmsg: OK
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | cpuconsumptiontime: 116290 s
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | nevents: 400
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | neventsw: 0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,723 | INFO     | pid: 5573
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | pgrp: 5573
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | corecount: 8
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | event service: False
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | sizes: {0: 2283857, 1: 2283999, 5: 2284261, 11: 2284317, 15106: 2315216, 15109: 2324214, 15110: 2324398, 15116: 2324592}
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | --------------------------------------------------
[2026-01-09 14:43:23] 2026-01-09 19:42:50,724 | INFO     | 
[2026-01-09 14:43:23] 2026-01-09 19:42:50,725 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 14:43:23] 2026-01-09 19:42:50,744 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,748 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,748 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:43:23] 2026-01-09 19:42:50,748 | INFO     | job 6963161284 has completed (purged errors)
[2026-01-09 14:43:23] 2026-01-09 19:42:50,748 | INFO     | overall cleanup function is called
[2026-01-09 14:43:23] 2026-01-09 19:42:51,756 | INFO     | --- collectZombieJob: --- 10, [5573]
[2026-01-09 14:43:23] 2026-01-09 19:42:51,756 | INFO     | zombie collector waiting for pid 5573
[2026-01-09 14:43:23] 2026-01-09 19:42:51,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:43:23] 2026-01-09 19:42:51,777 | INFO     | collected zombie processes
[2026-01-09 14:43:23] 2026-01-09 19:42:51,777 | INFO     | will attempt to kill all subprocesses of pid=5573
[2026-01-09 14:43:23] 2026-01-09 19:42:51,938 | INFO     | process IDs to be killed: [5573] (in reverse order)
[2026-01-09 14:43:23] 2026-01-09 19:42:52,077 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:43:23] 2026-01-09 19:42:52,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:43:23] 2026-01-09 19:42:52,083 | INFO     | did not find any defunct processes belonging to 5573
[2026-01-09 14:43:23] 2026-01-09 19:42:52,088 | INFO     | did not find any defunct processes belonging to 5573
[2026-01-09 14:43:23] 2026-01-09 19:42:52,088 | INFO     | ready for new job
[2026-01-09 14:43:23] 2026-01-09 19:42:52,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:43:23] 2026-01-09 19:42:52,090 | INFO     | ***************************************
[2026-01-09 14:43:23] 2026-01-09 19:42:52,091 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:43:23] 2026-01-09 19:42:52,091 | INFO     | ***************************************
[2026-01-09 14:43:23] 2026-01-09 19:42:52,091 | INFO     | 
[2026-01-09 14:43:23] 2026-01-09 19:42:52,092 | INFO     | architecture information:
[2026-01-09 14:43:23] 2026-01-09 19:42:52,093 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:43:23] 2026-01-09 19:42:52,107 | INFO     | cat /etc/os-release:
[2026-01-09 14:43:23] NAME="CentOS Linux"
[2026-01-09 14:43:23] VERSION="7 (Core)"
[2026-01-09 14:43:23] ID="centos"
[2026-01-09 14:43:23] ID_LIKE="rhel fedora"
[2026-01-09 14:43:23] VERSION_ID="7"
[2026-01-09 14:43:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:43:23] ANSI_COLOR="0;31"
[2026-01-09 14:43:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:43:23] HOME_URL="https://www.centos.org/"
[2026-01-09 14:43:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:43:23] 
[2026-01-09 14:43:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:43:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:43:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:43:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:43:23] 
[2026-01-09 14:43:23] 2026-01-09 19:42:52,108 | INFO     | ***************************************
[2026-01-09 14:43:23] 2026-01-09 19:42:52,610 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 14:43:23] 2026-01-09 19:42:52,630 | INFO     | sufficient remaining disk space (28107079680 B)
[2026-01-09 14:43:23] 2026-01-09 19:42:52,630 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:43:23] 2026-01-09 19:42:52,630 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:43:23] 2026-01-09 19:42:52,631 | INFO     | update_server=False
[2026-01-09 14:43:23] 2026-01-09 19:42:52,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:43:23] 2026-01-09 19:42:52,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:43:23] 2026-01-09 19:42:52,667 | INFO     | all data control threads have been joined
[2026-01-09 14:43:23] 2026-01-09 19:42:53,183 | INFO     | all job control threads have been joined
[2026-01-09 14:43:23] 2026-01-09 19:42:53,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:43:23] 2026-01-09 19:42:53,596 | INFO     | aborting loop
[2026-01-09 14:43:23] 2026-01-09 19:42:53,637 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:53,672 | INFO     | [data] control thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:53,686 | INFO     | all payload control threads have been joined
[2026-01-09 14:43:23] 2026-01-09 19:42:53,734 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,188 | INFO     | [job] control thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,221 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,222 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,223 | INFO     | [job] validate thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,235 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,239 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,263 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,601 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,637 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:54,692 | INFO     | [payload] control thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:55,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:43:23] 2026-01-09 19:42:55,138 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:55,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:43:23] 2026-01-09 19:42:56,618 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:42:59,044 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:43:23] 2026-01-09 19:43:04,605 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:43:23] 2026-01-09 19:43:05,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370944042816)>', '<ExcThread(monitor, started 140369933104896)>']
[2026-01-09 14:43:23] 2026-01-09 19:43:10,711 | INFO     | all workflow threads have been joined
[2026-01-09 14:43:23] 2026-01-09 19:43:10,711 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:43:23] 2026-01-09 19:43:10,712 | INFO     | traces error code: 0
[2026-01-09 14:43:23] 2026-01-09 19:43:10,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:43:23] 2026-01-09 19:43:22,704 | INFO     | PID=18623 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 14:43:23] 2026-01-09 19:43:22,704 | INFO     | .. there are 3 such processes running
[2026-01-09 14:43:23] 2026-01-09 19:43:22,705 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:43:23] 2026-01-09 19:43:22,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:43:23] 2026-01-09 19:43:22,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:43:23] 2026-01-09 19:43:22,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:43:23] 2026-01-09 19:43:22,706 | INFO     | [monitor] control thread has ended
[2026-01-09 14:43:23] 2026-01-09 19:43:22,817 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:43:23] 2026-01-09 19:43:22,819 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:43:23] 2026-01-09 19:43:22,821 [wrapper] pilotpid: 18623
[2026-01-09 14:43:23] 2026-01-09 19:43:22,824 [wrapper] Pilot exit status: 0
[2026-01-09 14:43:23] 2026-01-09 19:43:22,831 [wrapper] pandaids: 6963161284 6963161284
[2026-01-09 14:43:23] 2026-01-09 19:43:22,867 [wrapper] cleanup supervisor_pilot 27543 18624
[2026-01-09 14:43:23] 2026-01-09 19:43:22,870 [wrapper] Test setup, not cleaning
[2026-01-09 14:43:23] 2026-01-09 19:43:22,871 [wrapper] apfmon messages muted
[2026-01-09 14:43:23] 2026-01-09 19:43:22,873 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:43:23] 2026-01-09 19:43:22,875 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:43:23]  *** Error codes and diagnostics ***
[2026-01-09 14:43:23]     "exeErrorCode": 0,
[2026-01-09 14:43:23]     "exeErrorDiag": "",
[2026-01-09 14:43:23]     "pilotErrorCode": 0,
[2026-01-09 14:43:23]     "pilotErrorDiag": "",
[2026-01-09 14:43:23]  *** Listing of results directory ***
[2026-01-09 14:43:23] total 659968
[2026-01-09 14:43:23] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 14:43:23] -rwx------ 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas       100 Jan  9 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:43:23] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 08:33 run_atlas
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas       105 Jan  9 08:33 job.xml
[2026-01-09 14:43:23] -rw-r--r-- 3 boincer umatlas 223563759 Jan  9 08:33 EVNT.47898824._001275.pool.root.1
[2026-01-09 14:43:23] -rw-r--r-- 3 boincer umatlas 223563759 Jan  9 08:33 ATLAS.root_0
[2026-01-09 14:43:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:33 start_atlas.sh
[2026-01-09 14:43:23] drwxrwx--x 2 boincer umatlas      4096 Jan  9 08:33 shared
[2026-01-09 14:43:23] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 08:33 input.tar.gz
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas         0 Jan  9 08:33 boinc_lockfile
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 10:30 pandaJob.out
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas        57 Jan  9 10:30 setup.sh.local
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas    989377 Jan  9 10:30 agis_schedconf.cvmfs.json
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 14:37 init_data.xml
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas 219604096 Jan  9 14:42 HITS.47898826._032993.pool.root.1
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas       532 Jan  9 14:42 boinc_task_state.xml
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas      1055 Jan  9 14:42 memory_monitor_summary.json
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas   1516240 Jan  9 14:42 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas    487142 Jan  9 14:42 log.47898826._032993.job.log.tgz.1
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas      7859 Jan  9 14:42 heartbeat.json
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 14:42 boinc_mmap_file
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas        29 Jan  9 14:42 wrapper_checkpoint.txt
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas        96 Jan  9 14:43 pilot_heartbeat.json
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas       820 Jan  9 14:43 pilotlog.txt
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas   2099221 Jan  9 14:43 log.47898826._032993.job.log.1
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas       357 Jan  9 14:43 output.list
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas       620 Jan  9 14:43 runtime_log
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas   2600960 Jan  9 14:43 result.tar.gz
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas      9423 Jan  9 14:43 runtime_log.err
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas       787 Jan  9 14:43 o2vNDmX3Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHOgKDmlbqsXn.diag
[2026-01-09 14:43:23] -rw-r--r-- 1 boincer umatlas     23327 Jan  9 14:43 stderr.txt
[2026-01-09 14:43:23] HITS file was successfully produced:
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas 219604096 Jan  9 14:42 shared/HITS.pool.root.1
[2026-01-09 14:43:23]  *** Contents of shared directory: ***
[2026-01-09 14:43:23] total 435924
[2026-01-09 14:43:23] -rw-r--r-- 3 boincer umatlas 223563759 Jan  9 08:33 ATLAS.root_0
[2026-01-09 14:43:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:33 start_atlas.sh
[2026-01-09 14:43:23] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 08:33 input.tar.gz
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas 219604096 Jan  9 14:42 HITS.pool.root.1
[2026-01-09 14:43:23] -rw------- 1 boincer umatlas   2600960 Jan  9 14:43 result.tar.gz
14:43:24 (7455): run_atlas exited; CPU time 116480.016784
14:43:24 (7455): called boinc_finish(0)

</stderr_txt>
]]>

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