Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:31:23 (553295): wrapper (7.7.26015): starting
02:31:23 (553295): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 02:31:23] Arguments: --nthreads 4
[2026-01-10 02:31:23] Threads: 4
[2026-01-10 02:31:23] Checking for CVMFS
[2026-01-10 02:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:31:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:31:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:31:24] 2.9.2.0 3912768 2983 99432 154963 2 57 21185262 36864000 0 130560 0 2169700 99.989 114090 6233 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 02:31:24] CVMFS is ok
[2026-01-10 02:31:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:31:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:31:24] Further information can be found at the LHC@home message board.
[2026-01-10 02:31:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:31:24] Checking for apptainer binary...
[2026-01-10 02:31:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:31:24] Running /usr/bin/apptainer --version
[2026-01-10 02:31:24] apptainer version 1.4.1-1.1
[2026-01-10 02:31:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:31:24] thA375a
[2026-01-10 02:31:24] apptainer works
[2026-01-10 02:31:24] Set ATHENA_PROC_NUMBER=4
[2026-01-10 02:31:24] Set ATHENA_CORE_NUMBER=4
[2026-01-10 02:31:24] Starting ATLAS job with PandaID=6963162083
[2026-01-10 02:31:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:10:45]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | job 6963162083 has completed (purged errors)
[2026-01-10 04:10:45] 2026-01-10 03:10:14,845 | INFO     | overall cleanup function is called
[2026-01-10 04:10:45] 2026-01-10 03:10:15,852 | INFO     | --- collectZombieJob: --- 10, [563646]
[2026-01-10 04:10:45] 2026-01-10 03:10:15,852 | INFO     | zombie collector waiting for pid 563646
[2026-01-10 04:10:45] 2026-01-10 03:10:15,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:10:45] 2026-01-10 03:10:15,852 | INFO     | collected zombie processes
[2026-01-10 04:10:45] 2026-01-10 03:10:15,852 | INFO     | will attempt to kill all subprocesses of pid=563646
[2026-01-10 04:10:45] 2026-01-10 03:10:15,897 | INFO     | process IDs to be killed: [563646] (in reverse order)
[2026-01-10 04:10:45] 2026-01-10 03:10:15,930 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:10:45] 2026-01-10 03:10:15,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:10:45] 2026-01-10 03:10:15,932 | INFO     | did not find any defunct processes belonging to 563646
[2026-01-10 04:10:45] 2026-01-10 03:10:15,933 | INFO     | did not find any defunct processes belonging to 563646
[2026-01-10 04:10:45] 2026-01-10 03:10:15,934 | INFO     | ready for new job
[2026-01-10 04:10:45] 2026-01-10 03:10:15,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:10:45] 2026-01-10 03:10:15,934 | INFO     | ***************************************
[2026-01-10 04:10:45] 2026-01-10 03:10:15,934 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:10:45] 2026-01-10 03:10:15,934 | INFO     | ***************************************
[2026-01-10 04:10:45] 2026-01-10 03:10:15,935 | INFO     | 
[2026-01-10 04:10:45] 2026-01-10 03:10:15,935 | INFO     | architecture information:
[2026-01-10 04:10:45] 2026-01-10 03:10:15,935 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:10:45] 2026-01-10 03:10:15,949 | INFO     | cat /etc/os-release:
[2026-01-10 04:10:45] NAME="CentOS Linux"
[2026-01-10 04:10:45] VERSION="7 (Core)"
[2026-01-10 04:10:45] ID="centos"
[2026-01-10 04:10:45] ID_LIKE="rhel fedora"
[2026-01-10 04:10:45] VERSION_ID="7"
[2026-01-10 04:10:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:10:45] ANSI_COLOR="0;31"
[2026-01-10 04:10:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:10:45] HOME_URL="https://www.centos.org/"
[2026-01-10 04:10:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:10:45] 
[2026-01-10 04:10:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:10:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:10:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:10:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:10:45] 
[2026-01-10 04:10:45] 2026-01-10 03:10:15,950 | INFO     | ***************************************
[2026-01-10 04:10:45] 2026-01-10 03:10:16,453 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | INFO     | sufficient remaining disk space (238667431936 B)
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | INFO     | update_server=False
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:10:45] 2026-01-10 03:10:16,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:10:45] 2026-01-10 03:10:16,473 | INFO     | aborting loop
[2026-01-10 04:10:45] 2026-01-10 03:10:16,473 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 04:10:45] 2026-01-10 03:10:16,473 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:10:45] 2026-01-10 03:10:16,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:10:45] 2026-01-10 03:10:16,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:10:45] 2026-01-10 03:10:16,630 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:10:45] 2026-01-10 03:10:16,651 | INFO     | all payload control threads have been joined
[2026-01-10 04:10:45] 2026-01-10 03:10:17,038 | INFO     | all data control threads have been joined
[2026-01-10 04:10:45] 2026-01-10 03:10:17,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:10:45] 2026-01-10 03:10:17,478 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:17,478 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:17,478 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:17,657 | INFO     | [payload] control thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:17,666 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:17,710 | INFO     | all job control threads have been joined
[2026-01-10 04:10:45] 2026-01-10 03:10:18,043 | INFO     | [data] control thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,158 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,178 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,398 | INFO     | [job] validate thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,431 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,589 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,636 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,715 | INFO     | [job] control thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:18,825 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:21,321 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:26,914 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:10:45] 2026-01-10 03:10:27,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:10:45] 2026-01-10 03:10:39,784 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:10:45] 2026-01-10 03:10:40,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775454271296)>', '<ExcThread(monitor, started 139774744590080)>']
[2026-01-10 04:10:45] 2026-01-10 03:10:41,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:10:45] 2026-01-10 03:10:41,606 | INFO     | [monitor] control thread has ended
[2026-01-10 04:10:45] 2026-01-10 03:10:45,661 | INFO     | all workflow threads have been joined
[2026-01-10 04:10:45] 2026-01-10 03:10:45,662 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:10:45] 2026-01-10 03:10:45,662 | INFO     | traces error code: 0
[2026-01-10 04:10:45] 2026-01-10 03:10:45,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:10:45] 2026-01-10 03:10:45,790 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:10:45] 2026-01-10 03:10:45,794 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:10:45] 2026-01-10 03:10:45,798 [wrapper] pilotpid: 557084
[2026-01-10 04:10:45] 2026-01-10 03:10:45,803 [wrapper] Pilot exit status: 0
[2026-01-10 04:10:45] 2026-01-10 03:10:45,815 [wrapper] pandaids: 6963162083
[2026-01-10 04:10:45] 2026-01-10 03:10:45,838 [wrapper] cleanup supervisor_pilot  575889 557085
[2026-01-10 04:10:45] 2026-01-10 03:10:45,842 [wrapper] Test setup, not cleaning
[2026-01-10 04:10:45] 2026-01-10 03:10:45,846 [wrapper] apfmon messages muted
[2026-01-10 04:10:45] 2026-01-10 03:10:45,850 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:10:45] 2026-01-10 03:10:45,853 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:10:45]  *** Error codes and diagnostics ***
[2026-01-10 04:10:45]     "exeErrorCode": 0,
[2026-01-10 04:10:45]     "exeErrorDiag": "",
[2026-01-10 04:10:45]     "pilotErrorCode": 0,
[2026-01-10 04:10:45]     "pilotErrorDiag": "",
[2026-01-10 04:10:45]  *** Listing of results directory ***
[2026-01-10 04:10:45] total 437924
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 04:10:45] -rwx------ 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:10:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:31 run_atlas
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:31 job.xml
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc 223745413 Jan 10 02:31 EVNT.47898824._001237.pool.root.1
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc    592403 Jan 10 02:31 input.tar.gz
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:31 start_atlas.sh
[2026-01-10 04:10:45] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:31 shared
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:31 boinc_setup_complete
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc      6378 Jan 10 02:31 init_data.xml
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:31 boinc_lockfile
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc      2520 Jan 10 02:31 pandaJob.out
[2026-01-10 04:10:45] -rw------- 1 boinc boinc    989382 Jan 10 02:31 agis_schedconf.cvmfs.json
[2026-01-10 04:10:45] -rw------- 1 boinc boinc   1516240 Jan 10 02:31 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:10:45] drwx------ 5 boinc boinc      4096 Jan 10 02:31 pilot3
[2026-01-10 04:10:45] -rw------- 1 boinc boinc 218505785 Jan 10 04:09 HITS.47898826._033710.pool.root.1
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc       529 Jan 10 04:09 boinc_task_state.xml
[2026-01-10 04:10:45] -rw------- 1 boinc boinc        95 Jan 10 04:10 pilot_heartbeat.json
[2026-01-10 04:10:45] -rw------- 1 boinc boinc      1017 Jan 10 04:10 memory_monitor_summary.json
[2026-01-10 04:10:45] -rw------- 1 boinc boinc    280333 Jan 10 04:10 log.47898826._033710.job.log.tgz.1
[2026-01-10 04:10:45] -rw------- 1 boinc boinc      7772 Jan 10 04:10 heartbeat.json
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:10 wrapper_checkpoint.txt
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:10 boinc_mmap_file
[2026-01-10 04:10:45] -rw------- 1 boinc boinc      4628 Jan 10 04:10 pilotlog.txt
[2026-01-10 04:10:45] -rw------- 1 boinc boinc    858957 Jan 10 04:10 log.47898826._033710.job.log.1
[2026-01-10 04:10:45] -rw------- 1 boinc boinc       357 Jan 10 04:10 output.list
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:10 runtime_log
[2026-01-10 04:10:45] -rw------- 1 boinc boinc   1157120 Jan 10 04:10 result.tar.gz
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc      8902 Jan 10 04:10 runtime_log.err
[2026-01-10 04:10:45] -rw------- 1 boinc boinc       660 Jan 10 04:10 qgqMDml3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxdlKDmGRal5m.diag
[2026-01-10 04:10:45] -rw-r--r-- 1 boinc boinc     11836 Jan 10 04:10 stderr.txt
[2026-01-10 04:10:45] HITS file was successfully produced:
[2026-01-10 04:10:45] -rw------- 1 boinc boinc 218505785 Jan 10 04:09 shared/HITS.pool.root.1
[2026-01-10 04:10:45]  *** Contents of shared directory: ***
[2026-01-10 04:10:45] total 433628
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc 223745413 Jan 10 02:31 ATLAS.root_0
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc    592403 Jan 10 02:31 input.tar.gz
[2026-01-10 04:10:45] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:31 start_atlas.sh
[2026-01-10 04:10:45] -rw------- 1 boinc boinc 218505785 Jan 10 04:09 HITS.pool.root.1
[2026-01-10 04:10:45] -rw------- 1 boinc boinc   1157120 Jan 10 04:10 result.tar.gz
04:10:47 (553295): run_atlas exited; CPU time 22576.455052
04:10:47 (553295): called boinc_finish(0)

</stderr_txt>
]]>

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