Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:39:22 (4978): wrapper (7.7.26015): starting
03:39:22 (4978): wrapper: running run_atlas (--nthreads 2)
[2026-01-10 03:39:22] Arguments: --nthreads 2
[2026-01-10 03:39:22] Threads: 2
[2026-01-10 03:39:22] Checking for CVMFS
[2026-01-10 03:39:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:39:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:39:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:39:22] 2.9.2.0 3553530 3483 58684 154964 3 57 19125629 36864000 0 130560 0 1664220 99.985 129983 6827 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 03:39:22] CVMFS is ok
[2026-01-10 03:39:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:39:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:39:22] Further information can be found at the LHC@home message board.
[2026-01-10 03:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:39:22] Checking for apptainer binary...
[2026-01-10 03:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 03:39:22] Running /usr/bin/apptainer --version
[2026-01-10 03:39:22] apptainer version 1.4.1-1.1
[2026-01-10 03:39:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:39:22] madmaxA277a
[2026-01-10 03:39:22] apptainer works
[2026-01-10 03:39:22] Set ATHENA_PROC_NUMBER=2
[2026-01-10 03:39:22] Set ATHENA_CORE_NUMBER=2
[2026-01-10 03:39:22] Starting ATLAS job with PandaID=6963161850
[2026-01-10 03:39:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 06:31:56]  *** The last 200 lines of the pilot log: ***
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | job 6963161850 has completed (purged errors)
[2026-01-10 06:31:56] 2026-01-10 05:31:23,475 | INFO     | overall cleanup function is called
[2026-01-10 06:31:56] 2026-01-10 05:31:24,481 | INFO     | --- collectZombieJob: --- 10, [15106]
[2026-01-10 06:31:56] 2026-01-10 05:31:24,482 | INFO     | zombie collector waiting for pid 15106
[2026-01-10 06:31:56] 2026-01-10 05:31:24,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 06:31:56] 2026-01-10 05:31:24,482 | INFO     | collected zombie processes
[2026-01-10 06:31:56] 2026-01-10 05:31:24,482 | INFO     | will attempt to kill all subprocesses of pid=15106
[2026-01-10 06:31:56] 2026-01-10 05:31:24,517 | INFO     | process IDs to be killed: [15106] (in reverse order)
[2026-01-10 06:31:56] 2026-01-10 05:31:24,536 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 06:31:56] 2026-01-10 05:31:24,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 06:31:56] 2026-01-10 05:31:24,537 | INFO     | did not find any defunct processes belonging to 15106
[2026-01-10 06:31:56] 2026-01-10 05:31:24,537 | INFO     | did not find any defunct processes belonging to 15106
[2026-01-10 06:31:56] 2026-01-10 05:31:24,537 | INFO     | ready for new job
[2026-01-10 06:31:56] 2026-01-10 05:31:24,537 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | ***************************************
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | ***************************************
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | 
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | architecture information:
[2026-01-10 06:31:56] 2026-01-10 05:31:24,538 | INFO     | executing command: cat /etc/os-release
[2026-01-10 06:31:56] 2026-01-10 05:31:24,546 | INFO     | cat /etc/os-release:
[2026-01-10 06:31:56] NAME="CentOS Linux"
[2026-01-10 06:31:56] VERSION="7 (Core)"
[2026-01-10 06:31:56] ID="centos"
[2026-01-10 06:31:56] ID_LIKE="rhel fedora"
[2026-01-10 06:31:56] VERSION_ID="7"
[2026-01-10 06:31:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 06:31:56] ANSI_COLOR="0;31"
[2026-01-10 06:31:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 06:31:56] HOME_URL="https://www.centos.org/"
[2026-01-10 06:31:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 06:31:56] 
[2026-01-10 06:31:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 06:31:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 06:31:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 06:31:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 06:31:56] 
[2026-01-10 06:31:56] 2026-01-10 05:31:24,546 | INFO     | ***************************************
[2026-01-10 06:31:56] 2026-01-10 05:31:25,050 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | INFO     | sufficient remaining disk space (500030242816 B)
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | INFO     | update_server=False
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:31:56] 2026-01-10 05:31:25,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 06:31:56] 2026-01-10 05:31:25,298 | INFO     | all data control threads have been joined
[2026-01-10 06:31:56] 2026-01-10 05:31:25,610 | INFO     | all payload control threads have been joined
[2026-01-10 06:31:56] 2026-01-10 05:31:25,624 | INFO     | all job control threads have been joined
[2026-01-10 06:31:56] 2026-01-10 05:31:25,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:31:56] 2026-01-10 05:31:25,745 | INFO     | aborting loop
[2026-01-10 06:31:56] 2026-01-10 05:31:26,067 | INFO     | [job] retrieve thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,067 | INFO     | [job] queue monitor thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,278 | INFO     | [payload] failed_post thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,304 | INFO     | [data] control thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,616 | INFO     | [payload] control thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,629 | INFO     | [job] control thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,750 | INFO     | [job] job monitor thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,754 | INFO     | [data] copytool_in thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:26,797 | INFO     | [payload] validate_post thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:27,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 06:31:56] 2026-01-10 05:31:27,067 | INFO     | [data] copytool_out thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:27,177 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:27,388 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:27,500 | INFO     | [job] validate thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:27,509 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:31,016 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:35,260 | INFO     | job.realtimelogging is not enabled
[2026-01-10 06:31:56] 2026-01-10 05:31:36,266 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 06:31:56] 2026-01-10 05:31:50,702 | INFO     | [monitor] cgroup control has ended
[2026-01-10 06:31:56] 2026-01-10 05:31:51,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140382572013376)>', '<ExcThread(monitor, started 140381945591552)>']
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | INFO     | PID=8685 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 06:31:56] 2026-01-10 05:31:56,002 | INFO     | [monitor] control thread has ended
[2026-01-10 06:31:56] 2026-01-10 05:31:56,234 | INFO     | all workflow threads have been joined
[2026-01-10 06:31:56] 2026-01-10 05:31:56,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 06:31:56] 2026-01-10 05:31:56,235 | INFO     | traces error code: 0
[2026-01-10 06:31:56] 2026-01-10 05:31:56,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 06:31:56] 2026-01-10 05:31:56,277 [wrapper] ==== pilot stdout END ====
[2026-01-10 06:31:56] 2026-01-10 05:31:56,280 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 06:31:56] 2026-01-10 05:31:56,282 [wrapper] pilotpid: 8685
[2026-01-10 06:31:56] 2026-01-10 05:31:56,284 [wrapper] Pilot exit status: 0
[2026-01-10 06:31:56] 2026-01-10 05:31:56,290 [wrapper] pandaids: 6963161850
[2026-01-10 06:31:56] 2026-01-10 05:31:56,301 [wrapper] cleanup supervisor_pilot   33949 8686
[2026-01-10 06:31:56] 2026-01-10 05:31:56,303 [wrapper] Test setup, not cleaning
[2026-01-10 06:31:56] 2026-01-10 05:31:56,305 [wrapper] apfmon messages muted
[2026-01-10 06:31:56] 2026-01-10 05:31:56,307 [wrapper] ==== wrapper stdout END ====
[2026-01-10 06:31:56] 2026-01-10 05:31:56,309 [wrapper] ==== wrapper stderr END ====
[2026-01-10 06:31:56]  *** Error codes and diagnostics ***
[2026-01-10 06:31:56]     "exeErrorCode": 0,
[2026-01-10 06:31:56]     "exeErrorDiag": "",
[2026-01-10 06:31:56]     "pilotErrorCode": 0,
[2026-01-10 06:31:56]     "pilotErrorDiag": "",
[2026-01-10 06:31:56]  *** Listing of results directory ***
[2026-01-10 06:31:56] total 434756
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 06:31:56] -rwx------ 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 06:31:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:39 run_atlas
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:39 job.xml
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc 223512518 Jan 10 03:39 EVNT.47898824._001229.pool.root.1
[2026-01-10 06:31:56] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:39 shared
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc    592404 Jan 10 03:39 input.tar.gz
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:39 start_atlas.sh
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:39 boinc_setup_complete
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc      6210 Jan 10 03:39 init_data.xml
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:39 boinc_lockfile
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc      2520 Jan 10 03:39 pandaJob.out
[2026-01-10 06:31:56] -rw------- 1 boinc boinc    989382 Jan 10 03:39 agis_schedconf.cvmfs.json
[2026-01-10 06:31:56] -rw------- 1 boinc boinc   1516240 Jan 10 03:39 agis_ddmendpoints.agis.ALL.json
[2026-01-10 06:31:56] drwx------ 5 boinc boinc      4096 Jan 10 03:39 pilot3
[2026-01-10 06:31:56] -rw------- 1 boinc boinc 214225588 Jan 10 06:30 HITS.47898826._033507.pool.root.1
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc       530 Jan 10 06:30 boinc_task_state.xml
[2026-01-10 06:31:56] -rw------- 1 boinc boinc      1030 Jan 10 06:31 memory_monitor_summary.json
[2026-01-10 06:31:56] -rw------- 1 boinc boinc    310819 Jan 10 06:31 log.47898826._033507.job.log.tgz.1
[2026-01-10 06:31:56] -rw------- 1 boinc boinc        95 Jan 10 06:31 pilot_heartbeat.json
[2026-01-10 06:31:56] -rw------- 1 boinc boinc      7768 Jan 10 06:31 heartbeat.json
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc      8192 Jan 10 06:31 boinc_mmap_file
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc        28 Jan 10 06:31 wrapper_checkpoint.txt
[2026-01-10 06:31:56] -rw------- 1 boinc boinc      4821 Jan 10 06:31 pilotlog.txt
[2026-01-10 06:31:56] -rw------- 1 boinc boinc   1465385 Jan 10 06:31 log.47898826._033507.job.log.1
[2026-01-10 06:31:56] -rw------- 1 boinc boinc       357 Jan 10 06:31 output.list
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc       620 Jan 10 06:31 runtime_log
[2026-01-10 06:31:56] -rw------- 1 boinc boinc   1792000 Jan 10 06:31 result.tar.gz
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc      8923 Jan 10 06:31 runtime_log.err
[2026-01-10 06:31:56] -rw------- 1 boinc boinc       666 Jan 10 06:31 NnIODmk3Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFQgKDm3wsExm.diag
[2026-01-10 06:31:56] -rw-r--r-- 1 boinc boinc     11904 Jan 10 06:31 stderr.txt
[2026-01-10 06:31:56] HITS file was successfully produced:
[2026-01-10 06:31:56] -rw------- 1 boinc boinc 214225588 Jan 10 06:30 shared/HITS.pool.root.1
[2026-01-10 06:31:56]  *** Contents of shared directory: ***
[2026-01-10 06:31:56] total 429840
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc 223512518 Jan 10 03:39 ATLAS.root_0
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc    592404 Jan 10 03:39 input.tar.gz
[2026-01-10 06:31:56] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:39 start_atlas.sh
[2026-01-10 06:31:56] -rw------- 1 boinc boinc 214225588 Jan 10 06:30 HITS.pool.root.1
[2026-01-10 06:31:56] -rw------- 1 boinc boinc   1792000 Jan 10 06:31 result.tar.gz
06:31:58 (4978): run_atlas exited; CPU time 20141.255217
06:31:58 (4978): called boinc_finish(0)

</stderr_txt>
]]>

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