Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:49:25 (3909833): wrapper (7.7.26015): starting
00:49:25 (3909833): wrapper: running run_atlas (--nthreads 2)
[2026-01-10 00:49:25] Arguments: --nthreads 2
[2026-01-10 00:49:25] Threads: 2
[2026-01-10 00:49:25] Checking for CVMFS
[2026-01-10 00:49:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:49:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:49:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:49:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:49:25] 2.9.2.0 3358338 2925 63796 154961 1 56 26916771 36864000 0 130560 0 1446477 99.985 110918 5591 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:49:25] CVMFS is ok
[2026-01-10 00:49:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:49:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:49:25] Further information can be found at the LHC@home message board.
[2026-01-10 00:49:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:49:25] Checking for apptainer binary...
[2026-01-10 00:49:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:49:25] Running /usr/bin/apptainer --version
[2026-01-10 00:49:25] apptainer version 1.4.1-1.1
[2026-01-10 00:49:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:49:25] magicA244
[2026-01-10 00:49:25] apptainer works
[2026-01-10 00:49:25] Set ATHENA_PROC_NUMBER=2
[2026-01-10 00:49:25] Set ATHENA_CORE_NUMBER=2
[2026-01-10 00:49:25] Starting ATLAS job with PandaID=6963162041
[2026-01-10 00:49:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:43:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:43:59] 2026-01-10 02:43:28,399 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:43:59] 2026-01-10 02:43:28,399 | INFO     | ***************************************
[2026-01-10 03:43:59] 2026-01-10 02:43:28,399 | INFO     | 
[2026-01-10 03:43:59] 2026-01-10 02:43:28,399 | INFO     | architecture information:
[2026-01-10 03:43:59] 2026-01-10 02:43:28,399 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:43:59] 2026-01-10 02:43:28,407 | INFO     | cat /etc/os-release:
[2026-01-10 03:43:59] NAME="CentOS Linux"
[2026-01-10 03:43:59] VERSION="7 (Core)"
[2026-01-10 03:43:59] ID="centos"
[2026-01-10 03:43:59] ID_LIKE="rhel fedora"
[2026-01-10 03:43:59] VERSION_ID="7"
[2026-01-10 03:43:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:43:59] ANSI_COLOR="0;31"
[2026-01-10 03:43:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:43:59] HOME_URL="https://www.centos.org/"
[2026-01-10 03:43:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:43:59] 
[2026-01-10 03:43:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:43:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:43:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:43:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:43:59] 
[2026-01-10 03:43:59] 2026-01-10 02:43:28,407 | INFO     | ***************************************
[2026-01-10 03:43:59] 2026-01-10 02:43:28,910 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | INFO     | sufficient remaining disk space (497092132864 B)
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | INFO     | update_server=False
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:43:59] 2026-01-10 02:43:28,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:43:59] 2026-01-10 02:43:29,148 | INFO     | all payload control threads have been joined
[2026-01-10 03:43:59] 2026-01-10 02:43:29,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 03:43:59] 2026-01-10 02:43:29,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 03:43:59] 2026-01-10 02:43:29,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:43:59] 2026-01-10 02:43:29,196 | INFO     | will abort loop
[2026-01-10 03:43:59] 2026-01-10 02:43:29,504 | INFO     | all job control threads have been joined
[2026-01-10 03:43:59] 2026-01-10 02:43:29,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:43:59] 2026-01-10 02:43:29,887 | INFO     | all data control threads have been joined
[2026-01-10 03:43:59] 2026-01-10 02:43:29,927 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:29,928 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,110 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,154 | INFO     | [payload] control thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,202 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,510 | INFO     | [job] control thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,692 | INFO     | [job] validate thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,708 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,782 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,892 | INFO     | [data] control thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:30,900 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:31,021 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:31,386 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:31,607 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:31,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:43:59] 2026-01-10 02:43:35,632 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:39,845 | INFO     | job.realtimelogging is not enabled
[2026-01-10 03:43:59] 2026-01-10 02:43:40,850 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:43:59] 2026-01-10 02:43:53,292 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:43:59] 2026-01-10 02:43:54,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894340085568)>', '<ExcThread(monitor, started 139893820860160)>']
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | INFO     | PID=3913540 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:43:59] 2026-01-10 02:43:58,707 | INFO     | [monitor] control thread has ended
[2026-01-10 03:43:59] 2026-01-10 02:43:59,491 | INFO     | all workflow threads have been joined
[2026-01-10 03:43:59] 2026-01-10 02:43:59,491 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:43:59] 2026-01-10 02:43:59,492 | INFO     | traces error code: 0
[2026-01-10 03:43:59] 2026-01-10 02:43:59,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:43:59] 2026-01-10 02:43:59,535 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:43:59] 2026-01-10 02:43:59,538 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:43:59] 2026-01-10 02:43:59,540 [wrapper] pilotpid: 3913540
[2026-01-10 03:43:59] 2026-01-10 02:43:59,543 [wrapper] Pilot exit status: 0
[2026-01-10 03:43:59] 2026-01-10 02:43:59,549 [wrapper] pandaids: 6963162041
[2026-01-10 03:43:59] 2026-01-10 02:43:59,560 [wrapper] cleanup supervisor_pilot 3938792 3913541
[2026-01-10 03:43:59] 2026-01-10 02:43:59,562 [wrapper] Test setup, not cleaning
[2026-01-10 03:43:59] 2026-01-10 02:43:59,564 [wrapper] apfmon messages muted
[2026-01-10 03:43:59] 2026-01-10 02:43:59,566 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:43:59] 2026-01-10 02:43:59,568 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:43:59]  *** Error codes and diagnostics ***
[2026-01-10 03:43:59]     "exeErrorCode": 0,
[2026-01-10 03:43:59]     "exeErrorDiag": "",
[2026-01-10 03:43:59]     "pilotErrorCode": 0,
[2026-01-10 03:43:59]     "pilotErrorDiag": "",
[2026-01-10 03:43:59]  *** Listing of results directory ***
[2026-01-10 03:43:59] total 439888
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 03:43:59] -rwx------ 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:43:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:49 run_atlas
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:49 job.xml
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc 225451417 Jan 10 00:49 EVNT.47898824._001235.pool.root.1
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc    592400 Jan 10 00:49 input.tar.gz
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:49 start_atlas.sh
[2026-01-10 03:43:59] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:49 shared
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:49 boinc_setup_complete
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      6208 Jan 10 00:49 init_data.xml
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:49 boinc_lockfile
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      2520 Jan 10 00:49 pandaJob.out
[2026-01-10 03:43:59] -rw------- 1 boinc boinc    989374 Jan 10 00:49 agis_schedconf.cvmfs.json
[2026-01-10 03:43:59] -rw------- 1 boinc boinc   1516240 Jan 10 00:49 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:43:59] drwx------ 5 boinc boinc      4096 Jan 10 00:49 pilot3
[2026-01-10 03:43:59] -rw------- 1 boinc boinc 217467495 Jan 10 03:42 HITS.47898826._033668.pool.root.1
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc       530 Jan 10 03:43 boinc_task_state.xml
[2026-01-10 03:43:59] -rw------- 1 boinc boinc      1012 Jan 10 03:43 memory_monitor_summary.json
[2026-01-10 03:43:59] -rw------- 1 boinc boinc    326056 Jan 10 03:43 log.47898826._033668.job.log.tgz.1
[2026-01-10 03:43:59] -rw------- 1 boinc boinc      7756 Jan 10 03:43 heartbeat.json
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:43 boinc_mmap_file
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc        28 Jan 10 03:43 wrapper_checkpoint.txt
[2026-01-10 03:43:59] -rw------- 1 boinc boinc        95 Jan 10 03:43 pilot_heartbeat.json
[2026-01-10 03:43:59] -rw------- 1 boinc boinc      5010 Jan 10 03:43 pilotlog.txt
[2026-01-10 03:43:59] -rw------- 1 boinc boinc   1483359 Jan 10 03:43 log.47898826._033668.job.log.1
[2026-01-10 03:43:59] -rw------- 1 boinc boinc       357 Jan 10 03:43 output.list
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:43 runtime_log
[2026-01-10 03:43:59] -rw------- 1 boinc boinc   1832960 Jan 10 03:43 result.tar.gz
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      8913 Jan 10 03:43 runtime_log.err
[2026-01-10 03:43:59] -rw------- 1 boinc boinc       664 Jan 10 03:43 TMRMDml3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbdlKDmzWNnmn.diag
[2026-01-10 03:43:59] -rw-r--r-- 1 boinc boinc      9555 Jan 10 03:43 stderr.txt
[2026-01-10 03:43:59] HITS file was successfully produced:
[2026-01-10 03:43:59] -rw------- 1 boinc boinc 217467495 Jan 10 03:42 shared/HITS.pool.root.1
[2026-01-10 03:43:59]  *** Contents of shared directory: ***
[2026-01-10 03:43:59] total 434936
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc 225451417 Jan 10 00:49 ATLAS.root_0
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc    592400 Jan 10 00:49 input.tar.gz
[2026-01-10 03:43:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:49 start_atlas.sh
[2026-01-10 03:43:59] -rw------- 1 boinc boinc 217467495 Jan 10 03:42 HITS.pool.root.1
[2026-01-10 03:43:59] -rw------- 1 boinc boinc   1832960 Jan 10 03:43 result.tar.gz
03:44:01 (3909833): run_atlas exited; CPU time 20424.913035
03:44:01 (3909833): called boinc_finish(0)

</stderr_txt>
]]>

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