Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:01:13 (3077167): wrapper (7.7.26015): starting
02:01:13 (3077167): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 02:01:13] Arguments: --nthreads 3
[2026-01-10 02:01:13] Threads: 3
[2026-01-10 02:01:13] Checking for CVMFS
[2026-01-10 02:01:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:01:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:01:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:01:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:01:13] 2.9.2.0 2245490 3422 86228 154962 1 57 35003256 36864000 0 130560 0 2186508 99.987 131892 4676 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 02:01:13] CVMFS is ok
[2026-01-10 02:01:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:01:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:01:13] Further information can be found at the LHC@home message board.
[2026-01-10 02:01:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:01:13] Checking for apptainer binary...
[2026-01-10 02:01:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:01:13] Running /usr/bin/apptainer --version
[2026-01-10 02:01:13] apptainer version 1.4.1-1.1
[2026-01-10 02:01:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:01:14] thA331a
[2026-01-10 02:01:14] apptainer works
[2026-01-10 02:01:16] Set ATHENA_PROC_NUMBER=3
[2026-01-10 02:01:16] Set ATHENA_CORE_NUMBER=3
[2026-01-10 02:01:16] Starting ATLAS job with PandaID=6963161639
[2026-01-10 02:01:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:57:35]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:57:35] 2026-01-10 02:56:42,760 | INFO     | zombie collector waiting for pid 3087332
[2026-01-10 03:57:35] 2026-01-10 02:56:42,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:57:35] 2026-01-10 02:56:42,760 | INFO     | collected zombie processes
[2026-01-10 03:57:35] 2026-01-10 02:56:42,760 | INFO     | will attempt to kill all subprocesses of pid=3087332
[2026-01-10 03:57:35] 2026-01-10 02:56:42,802 | INFO     | process IDs to be killed: [3087332] (in reverse order)
[2026-01-10 03:57:35] 2026-01-10 02:56:42,825 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:57:35] 2026-01-10 02:56:42,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:57:35] 2026-01-10 02:56:42,827 | INFO     | did not find any defunct processes belonging to 3087332
[2026-01-10 03:57:35] 2026-01-10 02:56:42,828 | INFO     | did not find any defunct processes belonging to 3087332
[2026-01-10 03:57:35] 2026-01-10 02:56:42,828 | INFO     | ready for new job
[2026-01-10 03:57:35] 2026-01-10 02:56:42,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:57:35] 2026-01-10 02:56:42,828 | INFO     | ***************************************
[2026-01-10 03:57:35] 2026-01-10 02:56:42,829 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:57:35] 2026-01-10 02:56:42,829 | INFO     | ***************************************
[2026-01-10 03:57:35] 2026-01-10 02:56:42,829 | INFO     | 
[2026-01-10 03:57:35] 2026-01-10 02:56:42,829 | INFO     | architecture information:
[2026-01-10 03:57:35] 2026-01-10 02:56:42,829 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:57:35] 2026-01-10 02:56:42,838 | INFO     | cat /etc/os-release:
[2026-01-10 03:57:35] NAME="CentOS Linux"
[2026-01-10 03:57:35] VERSION="7 (Core)"
[2026-01-10 03:57:35] ID="centos"
[2026-01-10 03:57:35] ID_LIKE="rhel fedora"
[2026-01-10 03:57:35] VERSION_ID="7"
[2026-01-10 03:57:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:57:35] ANSI_COLOR="0;31"
[2026-01-10 03:57:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:57:35] HOME_URL="https://www.centos.org/"
[2026-01-10 03:57:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:57:35] 
[2026-01-10 03:57:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:57:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:57:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:57:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:57:35] 
[2026-01-10 03:57:35] 2026-01-10 02:56:42,838 | INFO     | ***************************************
[2026-01-10 03:57:35] 2026-01-10 02:56:43,341 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | INFO     | sufficient remaining disk space (324479746048 B)
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | INFO     | update_server=False
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:57:35] 2026-01-10 02:56:43,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:57:35] 2026-01-10 02:56:43,641 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 03:57:35] 2026-01-10 02:56:43,642 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 03:57:35] 2026-01-10 02:56:43,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:57:35] 2026-01-10 02:56:43,642 | INFO     | will abort loop
[2026-01-10 03:57:35] 2026-01-10 02:56:43,874 | INFO     | all data control threads have been joined
[2026-01-10 03:57:35] 2026-01-10 02:56:44,276 | INFO     | all job control threads have been joined
[2026-01-10 03:57:35] 2026-01-10 02:56:44,360 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,360 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,420 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,428 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,432 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,647 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:57:35] 2026-01-10 02:56:44,821 | INFO     | all payload control threads have been joined
[2026-01-10 03:57:35] 2026-01-10 02:56:44,879 | INFO     | [data] control thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:44,966 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:45,239 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:45,282 | INFO     | [job] control thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:45,508 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:45,827 | INFO     | [payload] control thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:45,827 | INFO     | [job] validate thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:46,801 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:47,361 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:56:54,203 | INFO     | job.realtimelogging is not enabled
[2026-01-10 03:57:35] 2026-01-10 02:56:55,208 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:57:35] 2026-01-10 02:57:13,538 | INFO     | PID=3080886 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:57:35] 2026-01-10 02:57:13,538 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:57:35] 2026-01-10 02:57:13,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:57:35] 2026-01-10 02:57:13,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:57:35] 2026-01-10 02:57:30,106 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:57:35] 2026-01-10 02:57:30,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939366287168)>', '<ExcThread(monitor, started 139938884478720)>']
[2026-01-10 03:57:35] 2026-01-10 02:57:30,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:57:35] 2026-01-10 02:57:30,628 | INFO     | [monitor] control thread has ended
[2026-01-10 03:57:35] 2026-01-10 02:57:35,491 | INFO     | all workflow threads have been joined
[2026-01-10 03:57:35] 2026-01-10 02:57:35,491 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:57:35] 2026-01-10 02:57:35,491 | INFO     | traces error code: 0
[2026-01-10 03:57:35] 2026-01-10 02:57:35,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:57:35] 2026-01-10 02:57:35,541 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:57:35] 2026-01-10 02:57:35,543 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:57:35] 2026-01-10 02:57:35,546 [wrapper] pilotpid: 3080886
[2026-01-10 03:57:35] 2026-01-10 02:57:35,548 [wrapper] Pilot exit status: 0
[2026-01-10 03:57:35] 2026-01-10 02:57:35,555 [wrapper] pandaids: 6963161639
[2026-01-10 03:57:35] 2026-01-10 02:57:35,571 [wrapper] cleanup supervisor_pilot 3101747 3080887
[2026-01-10 03:57:35] 2026-01-10 02:57:35,574 [wrapper] Test setup, not cleaning
[2026-01-10 03:57:35] 2026-01-10 02:57:35,576 [wrapper] apfmon messages muted
[2026-01-10 03:57:35] 2026-01-10 02:57:35,578 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:57:35] 2026-01-10 02:57:35,580 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:57:35]  *** Error codes and diagnostics ***
[2026-01-10 03:57:35]     "exeErrorCode": 0,
[2026-01-10 03:57:35]     "exeErrorDiag": "",
[2026-01-10 03:57:35]     "pilotErrorCode": 0,
[2026-01-10 03:57:35]     "pilotErrorDiag": "",
[2026-01-10 03:57:35]  *** Listing of results directory ***
[2026-01-10 03:57:35] total 441164
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 03:57:35] -rwx------ 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:57:35] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:01 run_atlas
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:01 job.xml
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc 222950930 Jan 10 02:01 EVNT.47898824._001288.pool.root.1
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc    592398 Jan 10 02:01 input.tar.gz
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:01 start_atlas.sh
[2026-01-10 03:57:35] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:01 shared
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:01 boinc_setup_complete
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc      6441 Jan 10 02:01 init_data.xml
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:01 boinc_lockfile
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc      2519 Jan 10 02:01 pandaJob.out
[2026-01-10 03:57:35] -rw------- 1 boinc boinc    989374 Jan 10 02:01 agis_schedconf.cvmfs.json
[2026-01-10 03:57:35] -rw------- 1 boinc boinc   1516240 Jan 10 02:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:57:35] drwx------ 5 boinc boinc      4096 Jan 10 02:01 pilot3
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc       529 Jan 10 03:56 boinc_task_state.xml
[2026-01-10 03:57:35] -rw------- 1 boinc boinc 222360401 Jan 10 03:56 HITS.47898826._033301.pool.root.1
[2026-01-10 03:57:35] -rw------- 1 boinc boinc      1016 Jan 10 03:56 memory_monitor_summary.json
[2026-01-10 03:57:35] -rw------- 1 boinc boinc    267912 Jan 10 03:56 log.47898826._033301.job.log.tgz.1
[2026-01-10 03:57:35] -rw------- 1 boinc boinc      7754 Jan 10 03:56 heartbeat.json
[2026-01-10 03:57:35] -rw------- 1 boinc boinc        95 Jan 10 03:57 pilot_heartbeat.json
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:57 boinc_mmap_file
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc        27 Jan 10 03:57 wrapper_checkpoint.txt
[2026-01-10 03:57:35] -rw------- 1 boinc boinc      5010 Jan 10 03:57 pilotlog.txt
[2026-01-10 03:57:35] -rw------- 1 boinc boinc    999348 Jan 10 03:57 log.47898826._033301.job.log.1
[2026-01-10 03:57:35] -rw------- 1 boinc boinc       357 Jan 10 03:57 output.list
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:57 runtime_log
[2026-01-10 03:57:35] -rw------- 1 boinc boinc   1290240 Jan 10 03:57 result.tar.gz
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc      8902 Jan 10 03:57 runtime_log.err
[2026-01-10 03:57:35] -rw------- 1 boinc boinc       660 Jan 10 03:57 R1sNDmY3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCclKDm5ophJm.diag
[2026-01-10 03:57:35] -rw-r--r-- 1 boinc boinc     10840 Jan 10 03:57 stderr.txt
[2026-01-10 03:57:35] HITS file was successfully produced:
[2026-01-10 03:57:35] -rw------- 1 boinc boinc 222360401 Jan 10 03:56 shared/HITS.pool.root.1
[2026-01-10 03:57:35]  *** Contents of shared directory: ***
[2026-01-10 03:57:35] total 436744
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc 222950930 Jan 10 02:01 ATLAS.root_0
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc    592398 Jan 10 02:01 input.tar.gz
[2026-01-10 03:57:35] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:01 start_atlas.sh
[2026-01-10 03:57:35] -rw------- 1 boinc boinc 222360401 Jan 10 03:56 HITS.pool.root.1
[2026-01-10 03:57:35] -rw------- 1 boinc boinc   1290240 Jan 10 03:57 result.tar.gz
03:57:37 (3077167): run_atlas exited; CPU time 20091.625362
03:57:37 (3077167): called boinc_finish(0)

</stderr_txt>
]]>

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