Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:40:20 (1317): wrapper (7.7.26015): starting
07:40:20 (1317): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 07:40:20] Arguments: --nthreads 12
[2026-01-09 07:40:20] Threads: 12
[2026-01-09 07:40:20] Checking for CVMFS
[2026-01-09 07:40:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:40:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:40:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:40:21] 2.11.2.0 2910 102273 95692 154942 1 59 14652148 20275200 1 130560 0 25687287 99.954 3805475 35540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 07:40:21] CVMFS is ok
[2026-01-09 07:40:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:40:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:40:21] Further information can be found at the LHC@home message board.
[2026-01-09 07:40:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:40:21] Checking for apptainer binary...
[2026-01-09 07:40:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:40:21] Running /usr/bin/apptainer --version
[2026-01-09 07:40:21] apptainer version 1.3.2-1.el7
[2026-01-09 07:40:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:40:22] c-205-11.aglt2.org
[2026-01-09 07:40:22] apptainer works
[2026-01-09 07:40:22] Set ATHENA_PROC_NUMBER=12
[2026-01-09 07:40:22] Set ATHENA_CORE_NUMBER=12
[2026-01-09 07:40:22] Starting ATLAS job with PandaID=6963160895
[2026-01-09 07:40:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:19:04]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:19:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 09:19:04]  replicas=None
[2026-01-09 09:19:04]  scope=mc23_13p6TeV
[2026-01-09 09:19:04]  status=None
[2026-01-09 09:19:04]  status_code=0
[2026-01-09 09:19:04]  storage_token=
[2026-01-09 09:19:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963160895/log.47898826._032718.job.log.tgz.1
[2026-01-09 09:19:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/9c/log.47898826._032718.job.log.tgz.1
[2026-01-09 09:19:04]  workdir=None
[2026-01-09 09:19:04] ]
[2026-01-09 09:19:04] 2026-01-09 14:18:26,247 | INFO     | transferring file log.47898826._032718.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963160895/log.47898826._032718.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 09:19:04] 2026-01-09 14:18:26,247 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963160895/log.47898826._032718.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._032718.job
[2026-01-09 09:19:04] 2026-01-09 14:18:26,272 | INFO     | adding to output.list: log.47898826._032718.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/9c/log.47898826._032718.job.log.tg
[2026-01-09 09:19:04] 2026-01-09 14:18:26,273 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 09:19:04] 2026-01-09 14:18:26,273 | INFO     | summary of transferred files:
[2026-01-09 09:19:04] 2026-01-09 14:18:26,273 | INFO     |  -- lfn=log.47898826._032718.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 09:19:04] 2026-01-09 14:18:26,273 | INFO     | stage-out finished correctly
[2026-01-09 09:19:04] 2026-01-09 14:18:27,225 | INFO     | time since job start (5870s) is within the limit (349056.0s)
[2026-01-09 09:19:04] 2026-01-09 14:18:27,689 | INFO     | monitor loop #435: job 0:6963160895 is in state 'finished'
[2026-01-09 09:19:04] 2026-01-09 14:18:27,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:19:04] 2026-01-09 14:18:27,721 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 09:19:04] 2026-01-09 14:18:28,046 | INFO     | job 6963160895 has state=finished
[2026-01-09 09:19:04] 2026-01-09 14:18:28,046 | INFO     | preparing for final server update for job 6963160895 in state='finished'
[2026-01-09 09:19:04] 2026-01-09 14:18:28,047 | INFO     | this job has now completed (state=finished)
[2026-01-09 09:19:04] 2026-01-09 14:18:28,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 09:19:04] 2026-01-09 14:18:28,047 | INFO     | log transfer has been attempted: DONE
[2026-01-09 09:19:04] 2026-01-09 14:18:28,047 | INFO     | job 6963160895 has finished - writing final server update
[2026-01-09 09:19:04] 2026-01-09 14:18:28,048 | INFO     | total number of processed events: 400 (read)
[2026-01-09 09:19:04] 2026-01-09 14:18:28,049 | INFO     | executing command: lscpu
[2026-01-09 09:19:04] 2026-01-09 14:18:28,077 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 09:19:04] 2026-01-09 14:18:29,231 | INFO     | time since job start (5872s) is within the limit (349056.0s)
[2026-01-09 09:19:04] 2026-01-09 14:18:30,191 | INFO     | monitor loop #436: job 0:6963160895 is in state 'finished'
[2026-01-09 09:19:04] 2026-01-09 14:18:30,191 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:19:04] 2026-01-09 14:18:31,235 | INFO     | time since job start (5874s) is within the limit (349056.0s)
[2026-01-09 09:19:04] 2026-01-09 14:18:32,694 | INFO     | monitor loop #437: job 0:6963160895 is in state 'finished'
[2026-01-09 09:19:04] 2026-01-09 14:18:32,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,026 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 09:19:04] 2026-01-09 14:18:33,030 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-09 09:19:04] 2026-01-09 14:18:33,032 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160895/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,033 | INFO     | extracted standard info from prmon json
[2026-01-09 09:19:04] 2026-01-09 14:18:33,033 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:19:04] 2026-01-09 14:18:33,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:19:04] 2026-01-09 14:18:33,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:19:04] 2026-01-09 14:18:33,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:19:04] 2026-01-09 14:18:33,037 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:19:04] 2026-01-09 14:18:33,037 | INFO     | sum of square deviations: 218571540.0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | sum of deviations: -6137760037.000001
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | mean x: 1767965455.0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | mean y: 2742616.202247191
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | intersect: 49649406205.13759
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | chi2: 0.06208800234459928
[2026-01-09 09:19:04] 2026-01-09 14:18:33,038 | INFO     | current memory leak: -28.08 B/s (using 89 data points, chi2=0.06)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | could have reported an average CPU frequency of 2125 MHz (7 samples)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | ..............................
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . Timing measurements:
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . get job = 0 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . initial setup = 2 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . payload setup = 7 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . stage-in = 0 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . payload execution = 5841 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,039 | INFO     | . stage-out = 0 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,040 | INFO     | . log creation = 0 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,040 | INFO     | ..............................
[2026-01-09 09:19:04] 2026-01-09 14:18:33,124 | INFO     | 
[2026-01-09 09:19:04] 2026-01-09 14:18:33,124 | INFO     | job summary report
[2026-01-09 09:19:04] 2026-01-09 14:18:33,124 | INFO     | --------------------------------------------------
[2026-01-09 09:19:04] 2026-01-09 14:18:33,124 | INFO     | PanDA job id: 6963160895
[2026-01-09 09:19:04] 2026-01-09 14:18:33,124 | INFO     | task id: 47898826
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | errors: (none)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | pilot state: finished 
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | transexitcode: 0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | exeerrorcode: 0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,125 | INFO     | exeerrordiag: 
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | exitcode: 0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | exitmsg: OK
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | cpuconsumptiontime: 64591 s
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | nevents: 400
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | neventsw: 0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | pid: 11573
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | pgrp: 11573
[2026-01-09 09:19:04] 2026-01-09 14:18:33,126 | INFO     | corecount: 12
[2026-01-09 09:19:04] 2026-01-09 14:18:33,127 | INFO     | event service: False
[2026-01-09 09:19:04] 2026-01-09 14:18:33,127 | INFO     | sizes: {0: 2283800, 1: 2283999, 6: 2284261, 11: 2284289, 5852: 2310989, 5853: 2319987, 5854: 2320171, 5859: 2320365}
[2026-01-09 09:19:04] 2026-01-09 14:18:33,127 | INFO     | --------------------------------------------------
[2026-01-09 09:19:04] 2026-01-09 14:18:33,127 | INFO     | 
[2026-01-09 09:19:04] 2026-01-09 14:18:33,127 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 09:19:04] 2026-01-09 14:18:33,153 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,153 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,154 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,156 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:19:04] 2026-01-09 14:18:33,157 | INFO     | job 6963160895 has completed (purged errors)
[2026-01-09 09:19:04] 2026-01-09 14:18:33,157 | INFO     | overall cleanup function is called
[2026-01-09 09:19:04] 2026-01-09 14:18:34,164 | INFO     | --- collectZombieJob: --- 10, [11573]
[2026-01-09 09:19:04] 2026-01-09 14:18:34,165 | INFO     | zombie collector waiting for pid 11573
[2026-01-09 09:19:04] 2026-01-09 14:18:34,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:19:04] 2026-01-09 14:18:34,165 | INFO     | collected zombie processes
[2026-01-09 09:19:04] 2026-01-09 14:18:34,165 | INFO     | will attempt to kill all subprocesses of pid=11573
[2026-01-09 09:19:04] 2026-01-09 14:18:34,256 | INFO     | process IDs to be killed: [11573] (in reverse order)
[2026-01-09 09:19:04] 2026-01-09 14:18:34,307 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:19:04] 2026-01-09 14:18:34,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:19:04] 2026-01-09 14:18:34,311 | INFO     | did not find any defunct processes belonging to 11573
[2026-01-09 09:19:04] 2026-01-09 14:18:34,314 | INFO     | did not find any defunct processes belonging to 11573
[2026-01-09 09:19:04] 2026-01-09 14:18:34,315 | INFO     | ready for new job
[2026-01-09 09:19:04] 2026-01-09 14:18:34,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:19:04] 2026-01-09 14:18:34,316 | INFO     | ***************************************
[2026-01-09 09:19:04] 2026-01-09 14:18:34,317 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:19:04] 2026-01-09 14:18:34,317 | INFO     | ***************************************
[2026-01-09 09:19:04] 2026-01-09 14:18:34,317 | INFO     | 
[2026-01-09 09:19:04] 2026-01-09 14:18:34,318 | INFO     | architecture information:
[2026-01-09 09:19:04] 2026-01-09 14:18:34,318 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:19:04] 2026-01-09 14:18:34,332 | INFO     | cat /etc/os-release:
[2026-01-09 09:19:04] NAME="CentOS Linux"
[2026-01-09 09:19:04] VERSION="7 (Core)"
[2026-01-09 09:19:04] ID="centos"
[2026-01-09 09:19:04] ID_LIKE="rhel fedora"
[2026-01-09 09:19:04] VERSION_ID="7"
[2026-01-09 09:19:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:19:04] ANSI_COLOR="0;31"
[2026-01-09 09:19:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:19:04] HOME_URL="https://www.centos.org/"
[2026-01-09 09:19:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:19:04] 
[2026-01-09 09:19:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:19:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:19:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:19:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:19:04] 
[2026-01-09 09:19:04] 2026-01-09 14:18:34,333 | INFO     | ***************************************
[2026-01-09 09:19:04] 2026-01-09 14:18:34,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 09:19:04] 2026-01-09 14:18:34,852 | INFO     | sufficient remaining disk space (29345447936 B)
[2026-01-09 09:19:04] 2026-01-09 14:18:34,853 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:19:04] 2026-01-09 14:18:34,853 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:19:04] 2026-01-09 14:18:34,853 | INFO     | update_server=False
[2026-01-09 09:19:04] 2026-01-09 14:18:34,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:19:04] 2026-01-09 14:18:34,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:19:04] 2026-01-09 14:18:34,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:19:04] 2026-01-09 14:18:35,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 09:19:04] 2026-01-09 14:18:35,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 09:19:04] 2026-01-09 14:18:35,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:19:04] 2026-01-09 14:18:35,197 | INFO     | will abort loop
[2026-01-09 09:19:04] 2026-01-09 14:18:35,233 | INFO     | all data control threads have been joined
[2026-01-09 09:19:04] 2026-01-09 14:18:35,856 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:35,860 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:35,895 | INFO     | all job control threads have been joined
[2026-01-09 09:19:04] 2026-01-09 14:18:35,936 | INFO     | all payload control threads have been joined
[2026-01-09 09:19:04] 2026-01-09 14:18:36,041 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,101 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,202 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,239 | INFO     | [data] control thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,296 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,836 | INFO     | [job] validate thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,860 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,898 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,899 | INFO     | [job] control thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,905 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,923 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:36,941 | INFO     | [payload] control thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:38,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:19:04] 2026-01-09 14:18:42,312 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:44,950 | INFO     | job.realtimelogging is not enabled
[2026-01-09 09:19:04] 2026-01-09 14:18:45,952 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:19:04] 2026-01-09 14:18:46,534 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:19:04] 2026-01-09 14:18:47,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323427579712)>', '<ExcThread(monitor, started 140322990438144)>']
[2026-01-09 09:19:04] 2026-01-09 14:18:52,413 | INFO     | all workflow threads have been joined
[2026-01-09 09:19:04] 2026-01-09 14:18:52,413 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:19:04] 2026-01-09 14:18:52,414 | INFO     | traces error code: 0
[2026-01-09 09:19:04] 2026-01-09 14:18:52,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:19:04] 2026-01-09 14:19:04,431 | INFO     | PID=5208 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 09:19:04] 2026-01-09 14:19:04,431 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:19:04] 2026-01-09 14:19:04,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:19:04] 2026-01-09 14:19:04,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:19:04] 2026-01-09 14:19:04,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:19:04] 2026-01-09 14:19:04,432 | INFO     | [monitor] control thread has ended
[2026-01-09 09:19:04] 2026-01-09 14:19:04,513 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:19:04] 2026-01-09 14:19:04,516 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:19:04] 2026-01-09 14:19:04,520 [wrapper] pilotpid: 5208
[2026-01-09 09:19:04] 2026-01-09 14:19:04,524 [wrapper] Pilot exit status: 0
[2026-01-09 09:19:04] 2026-01-09 14:19:04,540 [wrapper] pandaids: 6963160895
[2026-01-09 09:19:04] 2026-01-09 14:19:04,581 [wrapper] cleanup supervisor_pilot 10682 5209
[2026-01-09 09:19:04] 2026-01-09 14:19:04,585 [wrapper] Test setup, not cleaning
[2026-01-09 09:19:04] 2026-01-09 14:19:04,590 [wrapper] apfmon messages muted
[2026-01-09 09:19:04] 2026-01-09 14:19:04,593 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:19:04] 2026-01-09 14:19:04,597 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:19:04]  *** Error codes and diagnostics ***
[2026-01-09 09:19:04]     "exeErrorCode": 0,
[2026-01-09 09:19:04]     "exeErrorDiag": "",
[2026-01-09 09:19:04]     "pilotErrorCode": 0,
[2026-01-09 09:19:04]     "pilotErrorDiag": "",
[2026-01-09 09:19:04]  *** Listing of results directory ***
[2026-01-09 09:19:04] total 440212
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 09:19:04] -rwx------ 1 boincer umatlas     36322 Jan  8 16:48 runpilot2-wrapper.sh
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 16:50 queuedata.json
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas       100 Jan  9 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:19:04] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 07:40 run_atlas
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas       105 Jan  9 07:40 job.xml
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas 224666230 Jan  9 07:40 EVNT.47898824._001264.pool.root.1
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:40 start_atlas.sh
[2026-01-09 09:19:04] drwxrwx--x 2 boincer umatlas      4096 Jan  9 07:40 shared
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 07:40 input.tar.gz
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas         0 Jan  9 07:40 boinc_lockfile
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 07:40 pandaJob.out
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas    989377 Jan  9 07:40 agis_schedconf.cvmfs.json
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas   1516240 Jan  9 07:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:19:04] drwx------ 5 boincer umatlas      4096 Jan  9 07:40 pilot3
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas      5868 Jan  9 09:12 init_data.xml
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas 219704027 Jan  9 09:17 HITS.47898826._032718.pool.root.1
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas       529 Jan  9 09:18 boinc_task_state.xml
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas      1046 Jan  9 09:18 memory_monitor_summary.json
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas    413629 Jan  9 09:18 log.47898826._032718.job.log.tgz.1
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas      7853 Jan  9 09:18 heartbeat.json
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas        27 Jan  9 09:18 wrapper_checkpoint.txt
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 09:18 boinc_mmap_file
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas       744 Jan  9 09:19 pilotlog.txt
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas        95 Jan  9 09:19 pilot_heartbeat.json
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas    836187 Jan  9 09:19 log.47898826._032718.job.log.1
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas       357 Jan  9 09:19 output.list
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas       620 Jan  9 09:19 runtime_log
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas   1269760 Jan  9 09:19 result.tar.gz
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas      8819 Jan  9 09:19 runtime_log.err
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas       659 Jan  9 09:19 6o2KDmZ2Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOMgKDmgunA3m.diag
[2026-01-09 09:19:04] -rw-r--r-- 1 boincer umatlas     21904 Jan  9 09:19 stderr.txt
[2026-01-09 09:19:04] HITS file was successfully produced:
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas 219704027 Jan  9 09:17 shared/HITS.pool.root.1
[2026-01-09 09:19:04]  *** Contents of shared directory: ***
[2026-01-09 09:19:04] total 435800
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas 224666230 Jan  9 07:40 ATLAS.root_0
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:40 start_atlas.sh
[2026-01-09 09:19:04] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 07:40 input.tar.gz
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas 219704027 Jan  9 09:17 HITS.pool.root.1
[2026-01-09 09:19:04] -rw------- 1 boincer umatlas   1269760 Jan  9 09:19 result.tar.gz
09:19:06 (1317): run_atlas exited; CPU time 64533.695050
09:19:06 (1317): called boinc_finish(0)

</stderr_txt>
]]>

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