Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:27:09 (26645): wrapper (7.7.26015): starting
16:27:09 (26645): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:27:09] Arguments: --nthreads 8
[2026-01-09 16:27:09] Threads: 8
[2026-01-09 16:27:09] Checking for CVMFS
[2026-01-09 16:27:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:27:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:27:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:27:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:27:09] 2.11.2.0 11565 35593 100780 154948 0 56 23061293 25165824 0 130560 0 8190776 99.719 9786835 3032 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 16:27:09] CVMFS is ok
[2026-01-09 16:27:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:27:09] Checking for apptainer binary...
[2026-01-09 16:27:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:27:09] Running /usr/bin/apptainer --version
[2026-01-09 16:27:09] apptainer version 1.3.2-1.el7
[2026-01-09 16:27:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:27:11] cg-vwn374.simple-grid.lan
[2026-01-09 16:27:11] apptainer works
[2026-01-09 16:27:11] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:27:11] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:27:11] Starting ATLAS job with PandaID=6963161627
[2026-01-09 16:27:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:11:48]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:11:48] 2026-01-09 18:11:08,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:11:48] 2026-01-09 18:11:08,791 | INFO     | time since job start (9823s) is within the limit (349056.0s)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,382 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 19:11:48] 2026-01-09 18:11:10,383 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 19:11:48] 2026-01-09 18:11:10,385 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6963161627/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,385 | INFO     | extracted standard info from prmon json
[2026-01-09 19:11:48] 2026-01-09 18:11:10,385 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:11:48] 2026-01-09 18:11:10,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:11:48] 2026-01-09 18:11:10,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:11:48] 2026-01-09 18:11:10,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:11:48] 2026-01-09 18:11:10,388 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:11:48] 2026-01-09 18:11:10,389 | INFO     | sum of square deviations: 1294014960.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,389 | INFO     | sum of deviations: -20035850343.000008
[2026-01-09 19:11:48] 2026-01-09 18:11:10,389 | INFO     | mean x: 1767977356.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,389 | INFO     | mean y: 2525440.2236024844
[2026-01-09 19:11:48] 2026-01-09 18:11:10,390 | INFO     | intersect: 27376961447.229927
[2026-01-09 19:11:48] 2026-01-09 18:11:10,390 | INFO     | chi2: 2.469970953329878
[2026-01-09 19:11:48] 2026-01-09 18:11:10,390 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | sum of deviations: -8580591504.499993
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | mean x: 1767977203.5
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | mean y: 2540040.6474358975
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | intersect: 12889768126.983429
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | chi2: 1.7092770293649464
[2026-01-09 19:11:48] 2026-01-09 18:11:10,391 | INFO     | current chi2=1.7092770293649464 (change=30.797687031072424 %)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,392 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,392 | INFO     | sum of deviations: -7936202906.999999
[2026-01-09 19:11:48] 2026-01-09 18:11:10,392 | INFO     | mean x: 1767977051.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,392 | INFO     | mean y: 2540937.9602649007
[2026-01-09 19:11:48] 2026-01-09 18:11:10,392 | INFO     | intersect: 13145681971.414831
[2026-01-09 19:11:48] 2026-01-09 18:11:10,393 | INFO     | chi2: 1.7086925519553504
[2026-01-09 19:11:48] 2026-01-09 18:11:10,393 | INFO     | current chi2=1.7086925519553504 (change=0.034194422528052625 %)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,393 | INFO     | right removable region: 150
[2026-01-09 19:11:48] 2026-01-09 18:11:10,393 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | sum of deviations: -45002463574.50001
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | mean x: 1767977508.5
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | mean y: 2557561.1474358975
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | intersect: 67591967018.280136
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | chi2: 0.9513358320635366
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | current chi2=0.9513358320635366 (change=61.48392632791902 %)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,394 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | sum of deviations: -42613027175.999985
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | mean x: 1767977661.0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | mean y: 2554178.271523179
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | intersect: 70573988129.58765
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | chi2: 0.940141558641639
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | current chi2=0.940141558641639 (change=1.176689981036053 %)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,395 | INFO     | left removable region: 20
[2026-01-09 19:11:48] 2026-01-09 18:11:10,396 | INFO     | sum of square deviations: 681212772.5
[2026-01-09 19:11:48] 2026-01-09 18:11:10,396 | INFO     | sum of deviations: -21392425835.49999
[2026-01-09 19:11:48] 2026-01-09 18:11:10,396 | INFO     | mean x: 1767977630.5
[2026-01-09 19:11:48] 2026-01-09 18:11:10,396 | INFO     | mean y: 2558348.2538461536
[2026-01-09 19:11:48] 2026-01-09 18:11:10,396 | INFO     | intersect: 55523141440.80626
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | chi2: 0.13125488214615255
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | current memory leak: -31.40 B/s (using 130 data points, chi2=0.13)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | ..............................
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | . Timing measurements:
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | . get job = 0 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | . initial setup = 1 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | . payload setup = 7 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,397 | INFO     | . stage-in = 0 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,398 | INFO     | . payload execution = 9789 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,398 | INFO     | . stage-out = 1 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,398 | INFO     | . log creation = 0 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,398 | INFO     | ..............................
[2026-01-09 19:11:48] 2026-01-09 18:11:10,476 | INFO     | 
[2026-01-09 19:11:48] 2026-01-09 18:11:10,476 | INFO     | job summary report
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | --------------------------------------------------
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | PanDA job id: 6963161627
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | task id: 47898826
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | errors: (none)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | pilot state: finished 
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | transexitcode: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,477 | INFO     | exeerrorcode: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | exeerrordiag: 
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | exitcode: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | exitmsg: OK
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | cpuconsumptiontime: 74505 s
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | nevents: 400
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | neventsw: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | pid: 4435
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | pgrp: 4435
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | corecount: 8
[2026-01-09 19:11:48] 2026-01-09 18:11:10,478 | INFO     | event service: False
[2026-01-09 19:11:48] 2026-01-09 18:11:10,479 | INFO     | sizes: {0: 2283801, 1: 2284000, 5: 2284262, 11: 2284318, 9800: 2312581, 9801: 2321581, 9803: 2321765, 9809: 2321959}
[2026-01-09 19:11:48] 2026-01-09 18:11:10,479 | INFO     | --------------------------------------------------
[2026-01-09 19:11:48] 2026-01-09 18:11:10,479 | INFO     | 
[2026-01-09 19:11:48] 2026-01-09 18:11:10,479 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-01-09 19:11:48] 2026-01-09 18:11:10,502 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,502 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,505 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:11:48] 2026-01-09 18:11:10,505 | INFO     | job 6963161627 has completed (purged errors)
[2026-01-09 19:11:48] 2026-01-09 18:11:10,505 | INFO     | overall cleanup function is called
[2026-01-09 19:11:48] 2026-01-09 18:11:11,509 | INFO     | --- collectZombieJob: --- 10, [4435]
[2026-01-09 19:11:48] 2026-01-09 18:11:11,509 | INFO     | zombie collector waiting for pid 4435
[2026-01-09 19:11:48] 2026-01-09 18:11:11,509 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:11:48] 2026-01-09 18:11:11,509 | INFO     | collected zombie processes
[2026-01-09 19:11:48] 2026-01-09 18:11:11,510 | INFO     | will attempt to kill all subprocesses of pid=4435
[2026-01-09 19:11:48] 2026-01-09 18:11:11,573 | INFO     | process IDs to be killed: [4435] (in reverse order)
[2026-01-09 19:11:48] 2026-01-09 18:11:11,618 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:11:48] 2026-01-09 18:11:11,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:11:48] 2026-01-09 18:11:11,620 | INFO     | did not find any defunct processes belonging to 4435
[2026-01-09 19:11:48] 2026-01-09 18:11:11,622 | INFO     | did not find any defunct processes belonging to 4435
[2026-01-09 19:11:48] 2026-01-09 18:11:11,622 | INFO     | ready for new job
[2026-01-09 19:11:48] 2026-01-09 18:11:11,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:11:48] 2026-01-09 18:11:11,624 | INFO     | ***************************************
[2026-01-09 19:11:48] 2026-01-09 18:11:11,624 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:11:48] 2026-01-09 18:11:11,624 | INFO     | ***************************************
[2026-01-09 19:11:48] 2026-01-09 18:11:11,624 | INFO     | 
[2026-01-09 19:11:48] 2026-01-09 18:11:11,625 | INFO     | pilot is running in a VM
[2026-01-09 19:11:48] 2026-01-09 18:11:11,625 | INFO     | architecture information:
[2026-01-09 19:11:48] 2026-01-09 18:11:11,625 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:11:48] 2026-01-09 18:11:11,644 | INFO     | cat /etc/os-release:
[2026-01-09 19:11:48] NAME="CentOS Linux"
[2026-01-09 19:11:48] VERSION="7 (Core)"
[2026-01-09 19:11:48] ID="centos"
[2026-01-09 19:11:48] ID_LIKE="rhel fedora"
[2026-01-09 19:11:48] VERSION_ID="7"
[2026-01-09 19:11:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:11:48] ANSI_COLOR="0;31"
[2026-01-09 19:11:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:11:48] HOME_URL="https://www.centos.org/"
[2026-01-09 19:11:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:11:48] 
[2026-01-09 19:11:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:11:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:11:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:11:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:11:48] 
[2026-01-09 19:11:48] 2026-01-09 18:11:11,645 | INFO     | ***************************************
[2026-01-09 19:11:48] 2026-01-09 18:11:12,148 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-01-09 19:11:48] 2026-01-09 18:11:12,170 | INFO     | sufficient remaining disk space (497571332096 B)
[2026-01-09 19:11:48] 2026-01-09 18:11:12,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:11:48] 2026-01-09 18:11:12,171 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:11:48] 2026-01-09 18:11:12,171 | INFO     | update_server=False
[2026-01-09 19:11:48] 2026-01-09 18:11:12,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:11:48] 2026-01-09 18:11:12,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:11:48] 2026-01-09 18:11:12,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:11:48] 2026-01-09 18:11:12,205 | INFO     | aborting loop
[2026-01-09 19:11:48] 2026-01-09 18:11:12,456 | INFO     | all payload control threads have been joined
[2026-01-09 19:11:48] 2026-01-09 18:11:12,463 | INFO     | all data control threads have been joined
[2026-01-09 19:11:48] 2026-01-09 18:11:13,172 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,177 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,210 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,379 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,462 | INFO     | [payload] control thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,469 | INFO     | [data] control thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,521 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:13,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:11:48] 2026-01-09 18:11:13,675 | INFO     | all job control threads have been joined
[2026-01-09 19:11:48] 2026-01-09 18:11:13,710 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,195 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,306 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,450 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,625 | INFO     | [job] validate thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:14,681 | INFO     | [job] control thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:15,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:11:48] 2026-01-09 18:11:15,601 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:19,234 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:11:48] 2026-01-09 18:11:41,450 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:11:48] 2026-01-09 18:11:41,883 | INFO     | PID=30366 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 19:11:48] 2026-01-09 18:11:41,884 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:11:48] 2026-01-09 18:11:41,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:11:48] 2026-01-09 18:11:41,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:11:48] 2026-01-09 18:11:43,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993211438912)>', '<ExcThread(monitor, started 139992630286080)>']
[2026-01-09 19:11:48] 2026-01-09 18:11:43,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:11:48] 2026-01-09 18:11:43,895 | INFO     | [monitor] control thread has ended
[2026-01-09 19:11:48] 2026-01-09 18:11:48,303 | INFO     | all workflow threads have been joined
[2026-01-09 19:11:48] 2026-01-09 18:11:48,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:11:48] 2026-01-09 18:11:48,304 | INFO     | traces error code: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:48,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:11:48] 2026-01-09 18:11:48,445 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:11:48] 2026-01-09 18:11:48,449 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:11:48] 2026-01-09 18:11:48,453 [wrapper] pilotpid: 30366
[2026-01-09 19:11:48] 2026-01-09 18:11:48,462 [wrapper] Pilot exit status: 0
[2026-01-09 19:11:48] 2026-01-09 18:11:48,485 [wrapper] pandaids: 6963161627
[2026-01-09 19:11:48] 2026-01-09 18:11:48,516 [wrapper] cleanup supervisor_pilot 21246 30367
[2026-01-09 19:11:48] 2026-01-09 18:11:48,523 [wrapper] Test setup, not cleaning
[2026-01-09 19:11:48] 2026-01-09 18:11:48,527 [wrapper] apfmon messages muted
[2026-01-09 19:11:48] 2026-01-09 18:11:48,531 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:11:48] 2026-01-09 18:11:48,534 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:11:48]  *** Error codes and diagnostics ***
[2026-01-09 19:11:48]     "exeErrorCode": 0,
[2026-01-09 19:11:48]     "exeErrorDiag": "",
[2026-01-09 19:11:48]     "pilotErrorCode": 0,
[2026-01-09 19:11:48]     "pilotErrorDiag": "",
[2026-01-09 19:11:48]  *** Listing of results directory ***
[2026-01-09 19:11:48] total 441408
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 19:11:48] -rwx------. 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc       100 Jan  9 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:11:48] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 16:27 run_atlas
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc       105 Jan  9 16:27 job.xml
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc 226922573 Jan  9 16:27 EVNT.47898824._001287.pool.root.1
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 19:11:48] drwxrwx--x. 2 boinc boinc        68 Jan  9 16:27 shared
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc    592404 Jan  9 16:27 input.tar.gz
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc      6392 Jan  9 16:27 init_data.xml
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc         0 Jan  9 16:27 boinc_lockfile
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc      2520 Jan  9 16:27 pandaJob.out
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc    989377 Jan  9 16:27 agis_schedconf.cvmfs.json
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc   1516240 Jan  9 16:27 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:11:48] drwx------. 5 boinc boinc      4096 Jan  9 16:27 pilot3
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc 217754701 Jan  9 19:10 HITS.47898826._033289.pool.root.1
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc       530 Jan  9 19:10 boinc_task_state.xml
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc      1028 Jan  9 19:10 memory_monitor_summary.json
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc    396140 Jan  9 19:11 log.47898826._033289.job.log.tgz.1
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc      7775 Jan  9 19:11 heartbeat.json
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc      8192 Jan  9 19:11 boinc_mmap_file
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc        27 Jan  9 19:11 wrapper_checkpoint.txt
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc        95 Jan  9 19:11 pilot_heartbeat.json
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc      4810 Jan  9 19:11 pilotlog.txt
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc   1316659 Jan  9 19:11 log.47898826._033289.job.log.1
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc       357 Jan  9 19:11 output.list
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc       620 Jan  9 19:11 runtime_log
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc   1730560 Jan  9 19:11 result.tar.gz
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc      8832 Jan  9 19:11 runtime_log.err
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc       652 Jan  9 19:11 4yhNDmY3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6blKDm9fDmJn.diag
[2026-01-09 19:11:48] -rw-r--r--. 1 boinc boinc     20771 Jan  9 19:11 stderr.txt
[2026-01-09 19:11:48] HITS file was successfully produced:
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc 217754701 Jan  9 19:10 shared/HITS.pool.root.1
[2026-01-09 19:11:48]  *** Contents of shared directory: ***
[2026-01-09 19:11:48] total 436548
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc 226922573 Jan  9 16:27 ATLAS.root_0
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 19:11:48] -rw-r--r--. 2 boinc boinc    592404 Jan  9 16:27 input.tar.gz
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc 217754701 Jan  9 19:10 HITS.pool.root.1
[2026-01-09 19:11:48] -rw-------. 1 boinc boinc   1730560 Jan  9 19:11 result.tar.gz
19:11:50 (26645): run_atlas exited; CPU time 74579.767574
19:11:50 (26645): called boinc_finish(0)

</stderr_txt>
]]>

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