Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:27:40 (32561): wrapper (7.7.26015): starting
16:27:40 (32561): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:27:40] Arguments: --nthreads 8
[2026-01-09 16:27:40] Threads: 8
[2026-01-09 16:27:40] Checking for CVMFS
[2026-01-09 16:27:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:27:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:27:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:27:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:27:41] 2.11.2.0 9669 35595 93736 154948 2 56 15841672 25165824 0 130560 0 14899275 99.851 7375497 3490 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 16:27:41] CVMFS is ok
[2026-01-09 16:27:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:27:41] Checking for apptainer binary...
[2026-01-09 16:27:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:27:41] Running /usr/bin/apptainer --version
[2026-01-09 16:27:41] apptainer version 1.3.2-1.el7
[2026-01-09 16:27:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:27:42] cg-vwn394.simple-grid.lan
[2026-01-09 16:27:42] apptainer works
[2026-01-09 16:27:42] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:27:42] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:27:42] Starting ATLAS job with PandaID=6963156611
[2026-01-09 16:27:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:06:18]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:06:18] 2026-01-09 18:05:40,860 | INFO     | executing command: lscpu
[2026-01-09 19:06:18] 2026-01-09 18:05:40,879 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 19:06:18] 2026-01-09 18:05:42,629 | INFO     | time since job start (9466s) is within the limit (349056.0s)
[2026-01-09 19:06:18] 2026-01-09 18:05:43,812 | INFO     | PID=3925 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 19:06:18] 2026-01-09 18:05:43,813 | WARNING  | process 10397 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 19:06:18] 2026-01-09 18:05:43,814 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963156611/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:06:18] 2026-01-09 18:05:43,875 | INFO     | number of running child processes to parent process 10397: 1
[2026-01-09 19:06:18] 2026-01-09 18:05:43,875 | INFO     | maximum number of monitored processes: 6
[2026-01-09 19:06:18] 2026-01-09 18:05:44,813 | INFO     | time since job start (9468s) is within the limit (349056.0s)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,131 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 19:06:18] 2026-01-09 18:05:46,132 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 19:06:18] 2026-01-09 18:05:46,134 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963156611/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,135 | INFO     | extracted standard info from prmon json
[2026-01-09 19:06:18] 2026-01-09 18:05:46,135 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:06:18] 2026-01-09 18:05:46,135 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:06:18] 2026-01-09 18:05:46,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:06:18] 2026-01-09 18:05:46,136 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:06:18] 2026-01-09 18:05:46,139 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:06:18] 2026-01-09 18:05:46,140 | INFO     | sum of square deviations: 1154663510.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,141 | INFO     | sum of deviations: -10350885955.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,141 | INFO     | mean x: 1767977202.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,141 | INFO     | mean y: 2546135.1032258063
[2026-01-09 19:06:18] 2026-01-09 18:05:46,141 | INFO     | intersect: 15851432178.918707
[2026-01-09 19:06:18] 2026-01-09 18:05:46,141 | INFO     | chi2: 1.679074687810054
[2026-01-09 19:06:18] 2026-01-09 18:05:46,142 | INFO     | sum of square deviations: 1046484737.5
[2026-01-09 19:06:18] 2026-01-09 18:05:46,143 | INFO     | sum of deviations: -9572818297.499996
[2026-01-09 19:06:18] 2026-01-09 18:05:46,143 | INFO     | mean x: 1767977049.5
[2026-01-09 19:06:18] 2026-01-09 18:05:46,143 | INFO     | mean y: 2547236.1533333333
[2026-01-09 19:06:18] 2026-01-09 18:05:46,143 | INFO     | intersect: 16175284823.751122
[2026-01-09 19:06:18] 2026-01-09 18:05:46,144 | INFO     | chi2: 1.678275341309499
[2026-01-09 19:06:18] 2026-01-09 18:05:46,144 | INFO     | current chi2=1.678275341309499 (change=0.04760636952948551 %)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,144 | INFO     | right removable region: 149
[2026-01-09 19:06:18] 2026-01-09 18:05:46,144 | INFO     | sum of square deviations: 1046484737.5
[2026-01-09 19:06:18] 2026-01-09 18:05:46,145 | INFO     | sum of deviations: -34450257764.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,145 | INFO     | mean x: 1767977354.5
[2026-01-09 19:06:18] 2026-01-09 18:05:46,145 | INFO     | mean y: 2579614.7733333334
[2026-01-09 19:06:18] 2026-01-09 18:05:46,146 | INFO     | intersect: 58204360683.214195
[2026-01-09 19:06:18] 2026-01-09 18:05:46,146 | INFO     | chi2: 0.15541243850142572
[2026-01-09 19:06:18] 2026-01-09 18:05:46,146 | INFO     | current chi2=0.15541243850142572 (change=90.74416167251478 %)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,146 | INFO     | sum of square deviations: 945282840.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,147 | INFO     | sum of deviations: -32652238355.999992
[2026-01-09 19:06:18] 2026-01-09 18:05:46,147 | INFO     | mean x: 1767977507.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,147 | INFO     | mean y: 2576840.744827586
[2026-01-09 19:06:18] 2026-01-09 18:05:46,148 | INFO     | intersect: 61072576764.37683
[2026-01-09 19:06:18] 2026-01-09 18:05:46,148 | INFO     | chi2: 0.14174902890887853
[2026-01-09 19:06:18] 2026-01-09 18:05:46,148 | INFO     | current chi2=0.14174902890887853 (change=8.791709160667887 %)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,148 | INFO     | left removable region: 20
[2026-01-09 19:06:18] 2026-01-09 18:05:46,149 | INFO     | sum of square deviations: 665612480.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,149 | INFO     | sum of deviations: -22926877694.000008
[2026-01-09 19:06:18] 2026-01-09 18:05:46,150 | INFO     | mean x: 1767977629.0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,150 | INFO     | mean y: 2564942.6356589147
[2026-01-09 19:06:18] 2026-01-09 18:05:46,150 | INFO     | intersect: 60900171408.504684
[2026-01-09 19:06:18] 2026-01-09 18:05:46,150 | INFO     | chi2: 0.13082533135192476
[2026-01-09 19:06:18] 2026-01-09 18:05:46,150 | INFO     | current memory leak: -34.44 B/s (using 129 data points, chi2=0.13)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,151 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,151 | INFO     | ..............................
[2026-01-09 19:06:18] 2026-01-09 18:05:46,151 | INFO     | . Timing measurements:
[2026-01-09 19:06:18] 2026-01-09 18:05:46,151 | INFO     | . get job = 0 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . initial setup = 1 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . payload setup = 6 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . stage-in = 0 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . payload execution = 9436 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . stage-out = 0 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | . log creation = 0 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,152 | INFO     | ..............................
[2026-01-09 19:06:18] 2026-01-09 18:05:46,325 | INFO     | 
[2026-01-09 19:06:18] 2026-01-09 18:05:46,325 | INFO     | job summary report
[2026-01-09 19:06:18] 2026-01-09 18:05:46,325 | INFO     | --------------------------------------------------
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | PanDA job id: 6963156611
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | task id: 47898826
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | errors: (none)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | pilot state: finished 
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | transexitcode: 0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | exeerrorcode: 0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | exeerrordiag: 
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | exitcode: 0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | exitmsg: OK
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | cpuconsumptiontime: 71708 s
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | nevents: 400
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | neventsw: 0
[2026-01-09 19:06:18] 2026-01-09 18:05:46,326 | INFO     | pid: 10397
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | pgrp: 10397
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | corecount: 8
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | event service: False
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | sizes: {0: 2283801, 1: 2284000, 5: 2284262, 12: 2284318, 9447: 2312470, 9448: 2321654, 9454: 2321792}
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | --------------------------------------------------
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | 
[2026-01-09 19:06:18] 2026-01-09 18:05:46,327 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-09 19:06:18] 2026-01-09 18:05:46,349 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:06:18] 2026-01-09 18:05:46,351 | INFO     | job 6963156611 has completed (purged errors)
[2026-01-09 19:06:18] 2026-01-09 18:05:46,352 | INFO     | overall cleanup function is called
[2026-01-09 19:06:18] 2026-01-09 18:05:47,359 | INFO     | --- collectZombieJob: --- 10, [10397]
[2026-01-09 19:06:18] 2026-01-09 18:05:47,360 | INFO     | zombie collector waiting for pid 10397
[2026-01-09 19:06:18] 2026-01-09 18:05:47,360 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:06:18] 2026-01-09 18:05:47,360 | INFO     | collected zombie processes
[2026-01-09 19:06:18] 2026-01-09 18:05:47,360 | INFO     | will attempt to kill all subprocesses of pid=10397
[2026-01-09 19:06:18] 2026-01-09 18:05:47,425 | INFO     | process IDs to be killed: [10397] (in reverse order)
[2026-01-09 19:06:18] 2026-01-09 18:05:47,465 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:06:18] 2026-01-09 18:05:47,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:06:18] 2026-01-09 18:05:47,468 | INFO     | did not find any defunct processes belonging to 10397
[2026-01-09 19:06:18] 2026-01-09 18:05:47,469 | INFO     | did not find any defunct processes belonging to 10397
[2026-01-09 19:06:18] 2026-01-09 18:05:47,469 | INFO     | ready for new job
[2026-01-09 19:06:18] 2026-01-09 18:05:47,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:06:18] 2026-01-09 18:05:47,471 | INFO     | ***************************************
[2026-01-09 19:06:18] 2026-01-09 18:05:47,471 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:06:18] 2026-01-09 18:05:47,471 | INFO     | ***************************************
[2026-01-09 19:06:18] 2026-01-09 18:05:47,471 | INFO     | 
[2026-01-09 19:06:18] 2026-01-09 18:05:47,472 | INFO     | pilot is running in a VM
[2026-01-09 19:06:18] 2026-01-09 18:05:47,472 | INFO     | architecture information:
[2026-01-09 19:06:18] 2026-01-09 18:05:47,473 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:06:18] 2026-01-09 18:05:47,489 | INFO     | cat /etc/os-release:
[2026-01-09 19:06:18] NAME="CentOS Linux"
[2026-01-09 19:06:18] VERSION="7 (Core)"
[2026-01-09 19:06:18] ID="centos"
[2026-01-09 19:06:18] ID_LIKE="rhel fedora"
[2026-01-09 19:06:18] VERSION_ID="7"
[2026-01-09 19:06:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:06:18] ANSI_COLOR="0;31"
[2026-01-09 19:06:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:06:18] HOME_URL="https://www.centos.org/"
[2026-01-09 19:06:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:06:18] 
[2026-01-09 19:06:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:06:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:06:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:06:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:06:18] 
[2026-01-09 19:06:18] 2026-01-09 18:05:47,489 | INFO     | ***************************************
[2026-01-09 19:06:18] 2026-01-09 18:05:47,993 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-09 19:06:18] 2026-01-09 18:05:48,011 | INFO     | sufficient remaining disk space (497578672128 B)
[2026-01-09 19:06:18] 2026-01-09 18:05:48,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:06:18] 2026-01-09 18:05:48,011 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:06:18] 2026-01-09 18:05:48,011 | INFO     | update_server=False
[2026-01-09 19:06:18] 2026-01-09 18:05:48,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:06:18] 2026-01-09 18:05:48,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:06:18] 2026-01-09 18:05:48,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:06:18] 2026-01-09 18:05:48,013 | INFO     | aborting loop
[2026-01-09 19:06:18] 2026-01-09 18:05:48,442 | INFO     | all data control threads have been joined
[2026-01-09 19:06:18] 2026-01-09 18:05:48,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:06:18] 2026-01-09 18:05:48,853 | INFO     | all payload control threads have been joined
[2026-01-09 19:06:18] 2026-01-09 18:05:49,017 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,018 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,019 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,172 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,409 | INFO     | [job] validate thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,447 | INFO     | [data] control thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,652 | INFO     | all job control threads have been joined
[2026-01-09 19:06:18] 2026-01-09 18:05:49,712 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,806 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,859 | INFO     | [payload] control thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:49,874 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:50,304 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:50,409 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:50,468 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:50,658 | INFO     | [job] control thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:50,772 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:05:51,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:06:18] 2026-01-09 18:05:55,374 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:06:18] 2026-01-09 18:06:11,709 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:06:18] 2026-01-09 18:06:13,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705836480320)>', '<ExcThread(monitor, started 140705385137920)>']
[2026-01-09 19:06:18] 2026-01-09 18:06:17,900 | INFO     | PID=3925 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 19:06:18] 2026-01-09 18:06:17,901 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:06:18] 2026-01-09 18:06:17,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:06:18] 2026-01-09 18:06:17,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:06:18] 2026-01-09 18:06:17,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:06:18] 2026-01-09 18:06:17,901 | INFO     | [monitor] control thread has ended
[2026-01-09 19:06:18] 2026-01-09 18:06:18,175 | INFO     | all workflow threads have been joined
[2026-01-09 19:06:18] 2026-01-09 18:06:18,175 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:06:18] 2026-01-09 18:06:18,176 | INFO     | traces error code: 0
[2026-01-09 19:06:18] 2026-01-09 18:06:18,176 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:06:18] 2026-01-09 18:06:18,302 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:06:18] 2026-01-09 18:06:18,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:06:18] 2026-01-09 18:06:18,310 [wrapper] pilotpid: 3925
[2026-01-09 19:06:18] 2026-01-09 18:06:18,314 [wrapper] Pilot exit status: 0
[2026-01-09 19:06:18] 2026-01-09 18:06:18,328 [wrapper] pandaids: 6963156611
[2026-01-09 19:06:18] 2026-01-09 18:06:18,356 [wrapper] cleanup supervisor_pilot 27131 3926
[2026-01-09 19:06:18] 2026-01-09 18:06:18,364 [wrapper] Test setup, not cleaning
[2026-01-09 19:06:18] 2026-01-09 18:06:18,367 [wrapper] apfmon messages muted
[2026-01-09 19:06:18] 2026-01-09 18:06:18,370 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:06:18] 2026-01-09 18:06:18,373 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:06:18]  *** Error codes and diagnostics ***
[2026-01-09 19:06:18]     "exeErrorCode": 0,
[2026-01-09 19:06:18]     "exeErrorDiag": "",
[2026-01-09 19:06:18]     "pilotErrorCode": 0,
[2026-01-09 19:06:18]     "pilotErrorDiag": "",
[2026-01-09 19:06:18]  *** Listing of results directory ***
[2026-01-09 19:06:18] total 442604
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 19:06:18] -rwx------. 1 boinc boinc     36322 Jan  8 22:48 runpilot2-wrapper.sh
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:50 queuedata.json
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc       100 Jan  9 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:06:18] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 16:27 run_atlas
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc       105 Jan  9 16:27 job.xml
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc      6390 Jan  9 16:27 init_data.xml
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc 227942988 Jan  9 16:27 EVNT.47898824._001207.pool.root.1
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 19:06:18] drwxrwx--x. 2 boinc boinc        68 Jan  9 16:27 shared
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc    592400 Jan  9 16:27 input.tar.gz
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc         0 Jan  9 16:27 boinc_lockfile
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc      2520 Jan  9 16:27 pandaJob.out
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc    989377 Jan  9 16:27 agis_schedconf.cvmfs.json
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc   1516240 Jan  9 16:27 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:06:18] drwx------. 5 boinc boinc      4096 Jan  9 16:27 pilot3
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc 218077318 Jan  9 19:04 HITS.47898826._031781.pool.root.1
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc       529 Jan  9 19:05 boinc_task_state.xml
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc      1014 Jan  9 19:05 memory_monitor_summary.json
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc    383101 Jan  9 19:05 log.47898826._031781.job.log.tgz.1
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc      7773 Jan  9 19:05 heartbeat.json
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc        27 Jan  9 19:06 wrapper_checkpoint.txt
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc      8192 Jan  9 19:06 boinc_mmap_file
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc        95 Jan  9 19:06 pilot_heartbeat.json
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc      4809 Jan  9 19:06 pilotlog.txt
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc   1270445 Jan  9 19:06 log.47898826._031781.job.log.1
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc       357 Jan  9 19:06 output.list
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc       620 Jan  9 19:06 runtime_log
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc   1669120 Jan  9 19:06 result.tar.gz
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc      8832 Jan  9 19:06 runtime_log.err
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc       652 Jan  9 19:06 e40LDmL3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5ZlKDmvOLzQn.diag
[2026-01-09 19:06:18] -rw-r--r--. 1 boinc boinc     21129 Jan  9 19:06 stderr.txt
[2026-01-09 19:06:18] HITS file was successfully produced:
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc 218077318 Jan  9 19:04 shared/HITS.pool.root.1
[2026-01-09 19:06:18]  *** Contents of shared directory: ***
[2026-01-09 19:06:18] total 437800
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc 227942988 Jan  9 16:27 ATLAS.root_0
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 19:06:18] -rw-r--r--. 2 boinc boinc    592400 Jan  9 16:27 input.tar.gz
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc 218077318 Jan  9 19:04 HITS.pool.root.1
[2026-01-09 19:06:18] -rw-------. 1 boinc boinc   1669120 Jan  9 19:06 result.tar.gz
19:06:20 (32561): run_atlas exited; CPU time 71771.089099
19:06:20 (32561): called boinc_finish(0)

</stderr_txt>
]]>

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