Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:39 (1018498): wrapper (7.7.26015): starting
13:04:39 (1018498): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 13:04:39] Arguments: --nthreads 9
[2026-01-09 13:04:39] Threads: 9
[2026-01-09 13:04:39] Checking for CVMFS
[2026-01-09 13:04:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:04:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:04:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:04:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:04:41] 2.13.3.0 15513 93694 704396 154951 1 172 39407626 40960000 46371 16776704 0 813338066 99.831 351462044 31504 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 13:04:41] CVMFS is ok
[2026-01-09 13:04:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:04:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:04:41] Further information can be found at the LHC@home message board.
[2026-01-09 13:04:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:04:41] Checking for apptainer binary...
[2026-01-09 13:04:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:04:41] Running /usr/bin/apptainer --version
[2026-01-09 13:04:41] apptainer version 1.4.5-2.el9
[2026-01-09 13:04:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:04:42] c-1-1.aglt2.org
[2026-01-09 13:04:42] apptainer works
[2026-01-09 13:04:42] Set ATHENA_PROC_NUMBER=9
[2026-01-09 13:04:42] Set ATHENA_CORE_NUMBER=9
[2026-01-09 13:04:42] Starting ATLAS job with PandaID=6963161539
[2026-01-09 13:04:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:35:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:35:56] 2026-01-10 01:34:59,318 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 3032.245987499999
[2026-01-09 20:35:56] 2026-01-10 01:34:59,348 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963161539/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,348 | INFO     | extracted standard info from prmon json
[2026-01-09 20:35:56] 2026-01-10 01:34:59,348 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:35:56] 2026-01-10 01:34:59,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:35:56] 2026-01-10 01:34:59,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:35:56] 2026-01-10 01:34:59,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:35:56] 2026-01-10 01:34:59,366 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:35:56] 2026-01-10 01:34:59,366 | INFO     | sum of square deviations: 26234720665.412262
[2026-01-09 20:35:56] 2026-01-10 01:34:59,382 | INFO     | sum of deviations: 115397683426.31204
[2026-01-09 20:35:56] 2026-01-10 01:34:59,382 | INFO     | mean x: 1767995463.3621867
[2026-01-09 20:35:56] 2026-01-10 01:34:59,383 | INFO     | mean y: 2541588.633257403
[2026-01-09 20:35:56] 2026-01-10 01:34:59,383 | INFO     | intersect: -7774273853.095761
[2026-01-09 20:35:56] 2026-01-10 01:34:59,383 | INFO     | chi2: 2.5690496001901852
[2026-01-09 20:35:56] 2026-01-10 01:34:59,384 | INFO     | sum of square deviations: 25348521112.979305
[2026-01-09 20:35:56] 2026-01-10 01:34:59,393 | INFO     | sum of deviations: 141663823015.5991
[2026-01-09 20:35:56] 2026-01-10 01:34:59,398 | INFO     | mean x: 1767995310.8640554
[2026-01-09 20:35:56] 2026-01-10 01:34:59,398 | INFO     | mean y: 2546063.7050691242
[2026-01-09 20:35:56] 2026-01-10 01:34:59,398 | INFO     | intersect: -9878147713.037989
[2026-01-09 20:35:56] 2026-01-10 01:34:59,399 | INFO     | chi2: 1.8821621855400528
[2026-01-09 20:35:56] 2026-01-10 01:34:59,399 | INFO     | current chi2=1.8821621855400528 (change=26.737024252053466 %)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,400 | INFO     | sum of square deviations: 24482534459.80888
[2026-01-09 20:35:56] 2026-01-10 01:34:59,408 | INFO     | sum of deviations: 139460559369.19818
[2026-01-09 20:35:56] 2026-01-10 01:34:59,409 | INFO     | mean x: 1767995158.3682983
[2026-01-09 20:35:56] 2026-01-10 01:34:59,409 | INFO     | mean y: 2545675.7645687647
[2026-01-09 20:35:56] 2026-01-10 01:34:59,409 | INFO     | intersect: -10068535574.129923
[2026-01-09 20:35:56] 2026-01-10 01:34:59,409 | INFO     | chi2: 1.882181030237843
[2026-01-09 20:35:56] 2026-01-10 01:34:59,410 | INFO     | current chi2=1.882181030237843 (change=-0.0010012260332828437 %)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,410 | INFO     | right removable region: 428
[2026-01-09 20:35:56] 2026-01-10 01:34:59,410 | INFO     | sum of square deviations: 25348450902.248825
[2026-01-09 20:35:56] 2026-01-10 01:34:59,446 | INFO     | sum of deviations: 31204523244.57144
[2026-01-09 20:35:56] 2026-01-10 01:34:59,450 | INFO     | mean x: 1767995615.8663595
[2026-01-09 20:35:56] 2026-01-10 01:34:59,450 | INFO     | mean y: 2556013.285714286
[2026-01-09 20:35:56] 2026-01-10 01:34:59,450 | INFO     | intersect: -2173887056.3263927
[2026-01-09 20:35:56] 2026-01-10 01:34:59,451 | INFO     | chi2: 0.7712645050796507
[2026-01-09 20:35:56] 2026-01-10 01:34:59,451 | INFO     | current chi2=0.7712645050796507 (change=69.9786059006975 %)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,451 | INFO     | sum of square deviations: 24482367564.06973
[2026-01-09 20:35:56] 2026-01-10 01:34:59,460 | INFO     | sum of deviations: 21552311244.74822
[2026-01-09 20:35:56] 2026-01-10 01:34:59,461 | INFO     | mean x: 1767995768.3706293
[2026-01-09 20:35:56] 2026-01-10 01:34:59,461 | INFO     | mean y: 2557719.599067599
[2026-01-09 20:35:56] 2026-01-10 01:34:59,461 | INFO     | intersect: -1553843840.813885
[2026-01-09 20:35:56] 2026-01-10 01:34:59,461 | INFO     | chi2: 0.7527302915732091
[2026-01-09 20:35:56] 2026-01-10 01:34:59,462 | INFO     | current chi2=0.7527302915732091 (change=2.403094319053033 %)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,462 | INFO     | left removable region: 20
[2026-01-09 20:35:56] 2026-01-10 01:34:59,467 | INFO     | sum of square deviations: 21060192286.81368
[2026-01-09 20:35:56] 2026-01-10 01:34:59,474 | INFO     | sum of deviations: 30204852829.235294
[2026-01-09 20:35:56] 2026-01-10 01:34:59,474 | INFO     | mean x: 1767995737.887255
[2026-01-09 20:35:56] 2026-01-10 01:34:59,474 | INFO     | mean y: 2565433.3529411764
[2026-01-09 20:35:56] 2026-01-10 01:34:59,475 | INFO     | intersect: -2533121341.883018
[2026-01-09 20:35:56] 2026-01-10 01:34:59,479 | INFO     | chi2: 0.001676296280129215
[2026-01-09 20:35:56] 2026-01-10 01:34:59,480 | INFO     | current memory leak: 1.43 B/s (using 408 data points, chi2=0.00)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,480 | INFO     | could have reported an average CPU frequency of 2997 MHz (18 samples)
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | ..............................
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . Timing measurements:
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . get job = 0 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . initial setup = 7 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . payload setup = 42 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . stage-in = 0 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . payload execution = 26772 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . stage-out = 7 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | . log creation = 1 s
[2026-01-09 20:35:56] 2026-01-10 01:34:59,481 | INFO     | ..............................
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | 
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | job summary report
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | --------------------------------------------------
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | PanDA job id: 6963161539
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | task id: 47898826
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | errors: (none)
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:35:56] 2026-01-10 01:35:00,391 | INFO     | pilot state: finished 
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | transexitcode: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | exeerrorcode: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | exeerrordiag: 
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | exitcode: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | exitmsg: OK
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | cpuconsumptiontime: 60251 s
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | nevents: 400
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | neventsw: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | pid: 1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | pgrp: 1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | corecount: 9
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | event service: False
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | sizes: {0: 2283140, 1: 2283825, 2: 2284024, 3: 2284024, 4: 2284052, 15: 2284080, 26: 2284236, 35: 2284526, 37: 2284554, 26820: 2320504, 26821: 2320503, 26831: 2329
[2026-01-09 20:35:56] 2026-01-10 01:35:00,392 | INFO     | --------------------------------------------------
[2026-01-09 20:35:56] 2026-01-10 01:35:00,393 | INFO     | 
[2026-01-09 20:35:56] 2026-01-10 01:35:00,393 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 20:35:56] 2026-01-10 01:35:00,777 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,777 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,777 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | job 6963161539 has completed (purged errors)
[2026-01-09 20:35:56] 2026-01-10 01:35:00,779 | INFO     | overall cleanup function is called
[2026-01-09 20:35:56] 2026-01-10 01:35:01,817 | INFO     | --- collectZombieJob: --- 10, [1072290]
[2026-01-09 20:35:56] 2026-01-10 01:35:01,817 | INFO     | zombie collector waiting for pid 1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:01,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:35:56] 2026-01-10 01:35:01,817 | INFO     | collected zombie processes
[2026-01-09 20:35:56] 2026-01-10 01:35:01,817 | INFO     | will attempt to kill all subprocesses of pid=1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:02,018 | INFO     | PID=1037706 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:35:56] 2026-01-10 01:35:02,018 | INFO     | .. there are 71 such processes running
[2026-01-09 20:35:56] 2026-01-10 01:35:04,273 | INFO     | process IDs to be killed: [1072290] (in reverse order)
[2026-01-09 20:35:56] 2026-01-10 01:35:04,560 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:35:56] 2026-01-10 01:35:04,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:35:56] 2026-01-10 01:35:04,816 | INFO     | did not find any defunct processes belonging to 1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:04,959 | INFO     | did not find any defunct processes belonging to 1072290
[2026-01-09 20:35:56] 2026-01-10 01:35:04,960 | INFO     | ready for new job
[2026-01-09 20:35:56] 2026-01-10 01:35:04,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:35:56] 2026-01-10 01:35:04,962 | INFO     | ***************************************
[2026-01-09 20:35:56] 2026-01-10 01:35:04,963 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:35:56] 2026-01-10 01:35:04,963 | INFO     | ***************************************
[2026-01-09 20:35:56] 2026-01-10 01:35:04,963 | INFO     | 
[2026-01-09 20:35:56] 2026-01-10 01:35:04,967 | INFO     | architecture information:
[2026-01-09 20:35:56] 2026-01-10 01:35:04,975 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:35:56] 2026-01-10 01:35:05,076 | INFO     | cat /etc/os-release:
[2026-01-09 20:35:56] NAME="CentOS Linux"
[2026-01-09 20:35:56] VERSION="7 (Core)"
[2026-01-09 20:35:56] ID="centos"
[2026-01-09 20:35:56] ID_LIKE="rhel fedora"
[2026-01-09 20:35:56] VERSION_ID="7"
[2026-01-09 20:35:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:35:56] ANSI_COLOR="0;31"
[2026-01-09 20:35:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:35:56] HOME_URL="https://www.centos.org/"
[2026-01-09 20:35:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:35:56] 
[2026-01-09 20:35:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:35:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:35:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:35:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:35:56] 
[2026-01-09 20:35:56] 2026-01-10 01:35:05,076 | INFO     | ***************************************
[2026-01-09 20:35:56] 2026-01-10 01:35:05,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 20:35:56] 2026-01-10 01:35:05,679 | INFO     | sufficient remaining disk space (107137204224 B)
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | INFO     | update_server=False
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:35:56] 2026-01-10 01:35:05,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:35:56] 2026-01-10 01:35:05,681 | INFO     | aborting loop
[2026-01-09 20:35:56] 2026-01-10 01:35:05,984 | INFO     | all payload control threads have been joined
[2026-01-09 20:35:56] 2026-01-10 01:35:05,984 | INFO     | all data control threads have been joined
[2026-01-09 20:35:56] 2026-01-10 01:35:06,127 | INFO     | all job control threads have been joined
[2026-01-09 20:35:56] 2026-01-10 01:35:06,686 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,687 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,694 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,712 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,712 | INFO     | [job] validate thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,756 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:35:56] 2026-01-10 01:35:06,918 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,968 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,989 | INFO     | [payload] control thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:06,995 | INFO     | [data] control thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:07,133 | INFO     | [job] control thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:07,901 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:07,901 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:07,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:35:56] 2026-01-10 01:35:08,164 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:08,862 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:12,012 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:35:56] 2026-01-10 01:35:38,711 | INFO     | PID=1037706 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:35:56] 2026-01-10 01:35:38,711 | INFO     | .. there are 71 such processes running
[2026-01-09 20:35:56] 2026-01-10 01:35:38,712 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:35:56] 2026-01-10 01:35:38,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:35:56] 2026-01-10 01:35:38,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:35:56] 2026-01-10 01:35:47,054 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:35:56] 2026-01-10 01:35:47,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253161281344)>', '<ExcThread(monitor, started 140252651955968)>']
[2026-01-09 20:35:56] 2026-01-10 01:35:48,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:35:56] 2026-01-10 01:35:48,804 | INFO     | [monitor] control thread has ended
[2026-01-09 20:35:56] 2026-01-10 01:35:49,546 [wrapper] supervise_pilot (15 min periods counter: 31)
[2026-01-09 20:35:56] 2026-01-10 01:35:52,880 | INFO     | all workflow threads have been joined
[2026-01-09 20:35:56] 2026-01-10 01:35:52,880 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:35:56] 2026-01-10 01:35:52,880 | INFO     | traces error code: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:52,881 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:35:56] 2026-01-10 01:35:54,255 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:35:56] 2026-01-10 01:35:54,294 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:35:56] 2026-01-10 01:35:54,307 [wrapper] pilotpid: 1037706
[2026-01-09 20:35:56] 2026-01-10 01:35:54,335 [wrapper] Pilot exit status: 0
[2026-01-09 20:35:56] 2026-01-10 01:35:54,509 [wrapper] pandaids: 6963161539
[2026-01-09 20:35:56] 2026-01-10 01:35:55,564 [wrapper] cleanup supervisor_pilot  527729 1037708
[2026-01-09 20:35:56] 2026-01-10 01:35:55,599 [wrapper] Test setup, not cleaning
[2026-01-09 20:35:56] 2026-01-10 01:35:55,613 [wrapper] apfmon messages muted
[2026-01-09 20:35:56] 2026-01-10 01:35:55,654 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:35:56] 2026-01-10 01:35:55,673 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:35:56]  *** Error codes and diagnostics ***
[2026-01-09 20:35:56]     "exeErrorCode": 0,
[2026-01-09 20:35:56]     "exeErrorDiag": "",
[2026-01-09 20:35:56]     "pilotErrorCode": 0,
[2026-01-09 20:35:56]     "pilotErrorDiag": "",
[2026-01-09 20:35:56]  *** Listing of results directory ***
[2026-01-09 20:35:56] total 441640
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 20:35:56] -rwx------. 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:35:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:04 run_atlas
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:04 job.xml
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas 223832693 Jan  9 13:04 EVNT.47898824._001284.pool.root.1
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:04 start_atlas.sh
[2026-01-09 20:35:56] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:04 shared
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 13:04 input.tar.gz
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:04 boinc_lockfile
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 13:04 pandaJob.out
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas        57 Jan  9 13:04 setup.sh.local
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas    989356 Jan  9 13:05 agis_schedconf.cvmfs.json
[2026-01-09 20:35:56] drwx------. 5 boincer umatlas      4096 Jan  9 13:05 pilot3
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas      6840 Jan  9 20:31 init_data.xml
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas 217510482 Jan  9 20:32 HITS.47898826._033201.pool.root.1
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas       531 Jan  9 20:32 boinc_task_state.xml
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas      1043 Jan  9 20:34 memory_monitor_summary.json
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:34 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas    585420 Jan  9 20:34 log.47898826._033201.job.log.tgz.1
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas      7814 Jan  9 20:34 heartbeat.json
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas        95 Jan  9 20:35 pilot_heartbeat.json
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas      4825 Jan  9 20:35 pilotlog.txt
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:35 boinc_mmap_file
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:35 wrapper_checkpoint.txt
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas   2903936 Jan  9 20:35 log.47898826._033201.job.log.1
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas       357 Jan  9 20:35 output.list
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:35 runtime_log
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas   3512320 Jan  9 20:35 result.tar.gz
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas      9328 Jan  9 20:35 runtime_log.err
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas       654 Jan  9 20:35 q61KDmG1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpIgKDmObOSmm.diag
[2026-01-09 20:35:56] -rw-r--r--. 1 boincer umatlas     21318 Jan  9 20:35 stderr.txt
[2026-01-09 20:35:56] HITS file was successfully produced:
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas 217510482 Jan  9 20:32 shared/HITS.pool.root.1
[2026-01-09 20:35:56]  *** Contents of shared directory: ***
[2026-01-09 20:35:56] total 435036
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas 223832693 Jan  9 13:04 ATLAS.root_0
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:04 start_atlas.sh
[2026-01-09 20:35:56] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 13:04 input.tar.gz
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas 217510482 Jan  9 20:32 HITS.pool.root.1
[2026-01-09 20:35:56] -rw-------. 1 boincer umatlas   3512320 Jan  9 20:35 result.tar.gz
20:35:58 (1018498): run_atlas exited; CPU time 61816.532232
20:35:58 (1018498): called boinc_finish(0)

</stderr_txt>
]]>

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