Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:58 (478739): wrapper (7.7.26015): starting
18:09:58 (478739): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 18:09:58] Arguments: --nthreads 4
[2026-01-09 18:09:58] Threads: 4
[2026-01-09 18:09:58] Checking for CVMFS
[2026-01-09 18:09:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:09:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:09:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:09:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:09:58] 2.9.2.0 3067 1656 89692 154950 3 81 21072481 36864001 0 130560 0 1237742 99.991 57640 3603 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:09:58] CVMFS is ok
[2026-01-09 18:09:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:09:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:09:58] Further information can be found at the LHC@home message board.
[2026-01-09 18:09:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:09:58] Checking for apptainer binary...
[2026-01-09 18:09:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:09:58] Running /usr/bin/apptainer --version
[2026-01-09 18:09:58] apptainer version 1.4.1-1.1
[2026-01-09 18:09:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:09:58] thA383a
[2026-01-09 18:09:58] apptainer works
[2026-01-09 18:09:59] Set ATHENA_PROC_NUMBER=4
[2026-01-09 18:09:59] Set ATHENA_CORE_NUMBER=4
[2026-01-09 18:09:59] Starting ATLAS job with PandaID=6963161346
[2026-01-09 18:09:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:54:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | job 6963161346 has completed (purged errors)
[2026-01-09 19:54:19] 2026-01-09 18:53:39,219 | INFO     | overall cleanup function is called
[2026-01-09 19:54:19] 2026-01-09 18:53:40,226 | INFO     | --- collectZombieJob: --- 10, [489110]
[2026-01-09 19:54:19] 2026-01-09 18:53:40,226 | INFO     | zombie collector waiting for pid 489110
[2026-01-09 19:54:19] 2026-01-09 18:53:40,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:54:19] 2026-01-09 18:53:40,226 | INFO     | collected zombie processes
[2026-01-09 19:54:19] 2026-01-09 18:53:40,226 | INFO     | will attempt to kill all subprocesses of pid=489110
[2026-01-09 19:54:19] 2026-01-09 18:53:40,270 | INFO     | process IDs to be killed: [489110] (in reverse order)
[2026-01-09 19:54:19] 2026-01-09 18:53:40,303 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:54:19] 2026-01-09 18:53:40,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:54:19] 2026-01-09 18:53:40,305 | INFO     | did not find any defunct processes belonging to 489110
[2026-01-09 19:54:19] 2026-01-09 18:53:40,306 | INFO     | did not find any defunct processes belonging to 489110
[2026-01-09 19:54:19] 2026-01-09 18:53:40,306 | INFO     | ready for new job
[2026-01-09 19:54:19] 2026-01-09 18:53:40,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:54:19] 2026-01-09 18:53:40,307 | INFO     | ***************************************
[2026-01-09 19:54:19] 2026-01-09 18:53:40,307 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:54:19] 2026-01-09 18:53:40,307 | INFO     | ***************************************
[2026-01-09 19:54:19] 2026-01-09 18:53:40,307 | INFO     | 
[2026-01-09 19:54:19] 2026-01-09 18:53:40,308 | INFO     | architecture information:
[2026-01-09 19:54:19] 2026-01-09 18:53:40,308 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:54:19] 2026-01-09 18:53:40,322 | INFO     | cat /etc/os-release:
[2026-01-09 19:54:19] NAME="CentOS Linux"
[2026-01-09 19:54:19] VERSION="7 (Core)"
[2026-01-09 19:54:19] ID="centos"
[2026-01-09 19:54:19] ID_LIKE="rhel fedora"
[2026-01-09 19:54:19] VERSION_ID="7"
[2026-01-09 19:54:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:54:19] ANSI_COLOR="0;31"
[2026-01-09 19:54:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:54:19] HOME_URL="https://www.centos.org/"
[2026-01-09 19:54:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:54:19] 
[2026-01-09 19:54:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:54:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:54:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:54:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:54:19] 
[2026-01-09 19:54:19] 2026-01-09 18:53:40,322 | INFO     | ***************************************
[2026-01-09 19:54:19] 2026-01-09 18:53:40,825 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | INFO     | sufficient remaining disk space (239163408384 B)
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | INFO     | update_server=False
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:54:19] 2026-01-09 18:53:40,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:54:19] 2026-01-09 18:53:40,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:54:19] 2026-01-09 18:53:41,259 | INFO     | all job control threads have been joined
[2026-01-09 19:54:19] 2026-01-09 18:53:41,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:54:19] 2026-01-09 18:53:41,574 | INFO     | aborting loop
[2026-01-09 19:54:19] 2026-01-09 18:53:41,660 | INFO     | all data control threads have been joined
[2026-01-09 19:54:19] 2026-01-09 18:53:41,848 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:41,848 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:41,869 | INFO     | all payload control threads have been joined
[2026-01-09 19:54:19] 2026-01-09 18:53:41,947 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,177 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,265 | INFO     | [job] control thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,437 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,491 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,580 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,627 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,665 | INFO     | [data] control thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,874 | INFO     | [payload] control thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,935 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:42,960 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:43,256 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:43,296 | INFO     | [job] validate thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:53:44,849 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:54:19] 2026-01-09 18:54:11,701 | INFO     | PID=482534 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 19:54:19] 2026-01-09 18:54:11,702 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:54:19] 2026-01-09 18:54:11,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:54:19] 2026-01-09 18:54:11,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:54:19] 2026-01-09 18:54:13,880 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:54:19] 2026-01-09 18:54:14,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799263237952)>', '<ExcThread(monitor, started 139798475949824)>']
[2026-01-09 19:54:19] 2026-01-09 18:54:14,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:54:19] 2026-01-09 18:54:14,718 | INFO     | [monitor] control thread has ended
[2026-01-09 19:54:19] 2026-01-09 18:54:19,663 | INFO     | all workflow threads have been joined
[2026-01-09 19:54:19] 2026-01-09 18:54:19,663 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:54:19] 2026-01-09 18:54:19,664 | INFO     | traces error code: 0
[2026-01-09 19:54:19] 2026-01-09 18:54:19,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:54:19] 2026-01-09 18:54:19,740 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:54:19] 2026-01-09 18:54:19,744 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:54:19] 2026-01-09 18:54:19,748 [wrapper] pilotpid: 482534
[2026-01-09 19:54:19] 2026-01-09 18:54:19,752 [wrapper] Pilot exit status: 0
[2026-01-09 19:54:19] 2026-01-09 18:54:19,765 [wrapper] pandaids: 6963161346
[2026-01-09 19:54:19] 2026-01-09 18:54:19,787 [wrapper] cleanup supervisor_pilot  501302 482535
[2026-01-09 19:54:19] 2026-01-09 18:54:19,791 [wrapper] Test setup, not cleaning
[2026-01-09 19:54:19] 2026-01-09 18:54:19,795 [wrapper] apfmon messages muted
[2026-01-09 19:54:19] 2026-01-09 18:54:19,798 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:54:19] 2026-01-09 18:54:19,802 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:54:19]  *** Error codes and diagnostics ***
[2026-01-09 19:54:19]     "exeErrorCode": 0,
[2026-01-09 19:54:19]     "exeErrorDiag": "",
[2026-01-09 19:54:19]     "pilotErrorCode": 0,
[2026-01-09 19:54:19]     "pilotErrorDiag": "",
[2026-01-09 19:54:19]  *** Listing of results directory ***
[2026-01-09 19:54:19] total 452216
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 19:54:19] -rwx------ 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:54:19] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:09 run_atlas
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:09 job.xml
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc 225816998 Jan  9 18:09 EVNT.47898824._001278.pool.root.1
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc    592400 Jan  9 18:09 input.tar.gz
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:09 start_atlas.sh
[2026-01-09 19:54:19] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:09 shared
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:09 boinc_setup_complete
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc      6377 Jan  9 18:09 init_data.xml
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:09 boinc_lockfile
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc      2520 Jan  9 18:09 pandaJob.out
[2026-01-09 19:54:19] -rw------- 1 boinc boinc    989356 Jan  9 18:10 agis_schedconf.cvmfs.json
[2026-01-09 19:54:19] -rw------- 1 boinc boinc   1516240 Jan  9 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:54:19] drwx------ 5 boinc boinc      4096 Jan  9 18:10 pilot3
[2026-01-09 19:54:19] -rw------- 1 boinc boinc 230982875 Jan  9 19:53 HITS.47898826._033055.pool.root.1
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc       529 Jan  9 19:53 boinc_task_state.xml
[2026-01-09 19:54:19] -rw------- 1 boinc boinc      1026 Jan  9 19:53 memory_monitor_summary.json
[2026-01-09 19:54:19] -rw------- 1 boinc boinc    280647 Jan  9 19:53 log.47898826._033055.job.log.tgz.1
[2026-01-09 19:54:19] -rw------- 1 boinc boinc      7770 Jan  9 19:53 heartbeat.json
[2026-01-09 19:54:19] -rw------- 1 boinc boinc        95 Jan  9 19:53 pilot_heartbeat.json
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc      8192 Jan  9 19:54 boinc_mmap_file
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc        27 Jan  9 19:54 wrapper_checkpoint.txt
[2026-01-09 19:54:19] -rw------- 1 boinc boinc      4751 Jan  9 19:54 pilotlog.txt
[2026-01-09 19:54:19] -rw------- 1 boinc boinc    899458 Jan  9 19:54 log.47898826._033055.job.log.1
[2026-01-09 19:54:19] -rw------- 1 boinc boinc       357 Jan  9 19:54 output.list
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc       620 Jan  9 19:54 runtime_log
[2026-01-09 19:54:19] -rw------- 1 boinc boinc   1198080 Jan  9 19:54 result.tar.gz
[2026-01-09 19:54:19] -rw------- 1 boinc boinc       660 Jan  9 19:54 yIdNDm30Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkUlKDmaOnuvn.diag
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc      8902 Jan  9 19:54 runtime_log.err
[2026-01-09 19:54:19] -rw-r--r-- 1 boinc boinc     12726 Jan  9 19:54 stderr.txt
[2026-01-09 19:54:19] HITS file was successfully produced:
[2026-01-09 19:54:19] -rw------- 1 boinc boinc 230982875 Jan  9 19:53 shared/HITS.pool.root.1
[2026-01-09 19:54:19]  *** Contents of shared directory: ***
[2026-01-09 19:54:19] total 447876
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc 225816998 Jan  9 18:09 ATLAS.root_0
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc    592400 Jan  9 18:09 input.tar.gz
[2026-01-09 19:54:19] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:09 start_atlas.sh
[2026-01-09 19:54:19] -rw------- 1 boinc boinc 230982875 Jan  9 19:53 HITS.pool.root.1
[2026-01-09 19:54:19] -rw------- 1 boinc boinc   1198080 Jan  9 19:54 result.tar.gz
19:54:21 (478739): run_atlas exited; CPU time 23746.615873
19:54:21 (478739): called boinc_finish(0)

</stderr_txt>
]]>

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