Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:34 (4119187): wrapper (7.7.26015): starting
03:59:34 (4119187): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 03:59:34] Arguments: --nthreads 3
[2026-01-10 03:59:34] Threads: 3
[2026-01-10 03:59:34] Checking for CVMFS
[2026-01-10 03:59:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:59:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:59:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:59:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:59:34] 2.9.2.0 3347489 3128 81964 154964 3 57 15563111 36864000 0 130560 0 1952988 99.988 116784 6274 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 03:59:34] CVMFS is ok
[2026-01-10 03:59:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:59:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:59:34] Further information can be found at the LHC@home message board.
[2026-01-10 03:59:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:59:34] Checking for apptainer binary...
[2026-01-10 03:59:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 03:59:34] Running /usr/bin/apptainer --version
[2026-01-10 03:59:34] apptainer version 1.4.1-1.1
[2026-01-10 03:59:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:59:34] thA325a
[2026-01-10 03:59:34] apptainer works
[2026-01-10 03:59:34] Set ATHENA_PROC_NUMBER=3
[2026-01-10 03:59:34] Set ATHENA_CORE_NUMBER=3
[2026-01-10 03:59:34] Starting ATLAS job with PandaID=6962922612
[2026-01-10 03:59:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:54:53]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:54:53] 2026-01-10 04:54:16,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:54:53] 2026-01-10 04:54:16,125 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:54:53] 2026-01-10 04:54:16,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:54:53] 2026-01-10 04:54:16,126 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:54:53] 2026-01-10 04:54:16,126 | INFO     | job 6962922612 has completed (purged errors)
[2026-01-10 05:54:53] 2026-01-10 04:54:16,126 | INFO     | overall cleanup function is called
[2026-01-10 05:54:53] 2026-01-10 04:54:17,132 | INFO     | --- collectZombieJob: --- 10, [4129354]
[2026-01-10 05:54:53] 2026-01-10 04:54:17,132 | INFO     | zombie collector waiting for pid 4129354
[2026-01-10 05:54:53] 2026-01-10 04:54:17,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:54:53] 2026-01-10 04:54:17,132 | INFO     | collected zombie processes
[2026-01-10 05:54:53] 2026-01-10 04:54:17,132 | INFO     | will attempt to kill all subprocesses of pid=4129354
[2026-01-10 05:54:53] 2026-01-10 04:54:17,182 | INFO     | process IDs to be killed: [4129354] (in reverse order)
[2026-01-10 05:54:53] 2026-01-10 04:54:17,209 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:54:53] 2026-01-10 04:54:17,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:54:53] 2026-01-10 04:54:17,210 | INFO     | did not find any defunct processes belonging to 4129354
[2026-01-10 05:54:53] 2026-01-10 04:54:17,212 | INFO     | did not find any defunct processes belonging to 4129354
[2026-01-10 05:54:53] 2026-01-10 04:54:17,212 | INFO     | ready for new job
[2026-01-10 05:54:53] 2026-01-10 04:54:17,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | ***************************************
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | ***************************************
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | 
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | architecture information:
[2026-01-10 05:54:53] 2026-01-10 04:54:17,213 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:54:53] 2026-01-10 04:54:17,222 | INFO     | cat /etc/os-release:
[2026-01-10 05:54:53] NAME="CentOS Linux"
[2026-01-10 05:54:53] VERSION="7 (Core)"
[2026-01-10 05:54:53] ID="centos"
[2026-01-10 05:54:53] ID_LIKE="rhel fedora"
[2026-01-10 05:54:53] VERSION_ID="7"
[2026-01-10 05:54:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:54:53] ANSI_COLOR="0;31"
[2026-01-10 05:54:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:54:53] HOME_URL="https://www.centos.org/"
[2026-01-10 05:54:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:54:53] 
[2026-01-10 05:54:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:54:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:54:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:54:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:54:53] 
[2026-01-10 05:54:53] 2026-01-10 04:54:17,222 | INFO     | ***************************************
[2026-01-10 05:54:53] 2026-01-10 04:54:17,723 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | INFO     | sufficient remaining disk space (243978469376 B)
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | INFO     | update_server=False
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 05:54:53] 2026-01-10 04:54:17,735 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:54:53] 2026-01-10 04:54:17,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:54:53] 2026-01-10 04:54:17,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:54:53] 2026-01-10 04:54:17,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:54:53] 2026-01-10 04:54:17,744 | INFO     | all data control threads have been joined
[2026-01-10 05:54:53] 2026-01-10 04:54:17,948 | INFO     | all job control threads have been joined
[2026-01-10 05:54:53] 2026-01-10 04:54:18,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:54:53] 2026-01-10 04:54:18,614 | INFO     | aborting loop
[2026-01-10 05:54:53] 2026-01-10 04:54:18,741 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:18,749 | INFO     | [data] control thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:18,775 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:18,911 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:18,953 | INFO     | [job] control thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:19,132 | INFO     | all payload control threads have been joined
[2026-01-10 05:54:53] 2026-01-10 04:54:19,608 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:19,619 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:19,683 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:19,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:54:53] 2026-01-10 04:54:19,712 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:19,742 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:20,136 | INFO     | [payload] control thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:20,183 | INFO     | [job] validate thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:20,224 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:20,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:54:53] 2026-01-10 04:54:21,628 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:23,711 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:28,672 | INFO     | job.realtimelogging is not enabled
[2026-01-10 05:54:53] 2026-01-10 04:54:29,678 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:54:53] 2026-01-10 04:54:47,241 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:54:53] 2026-01-10 04:54:48,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139779091662656)>', '<ExcThread(monitor, started 139778729158400)>']
[2026-01-10 05:54:53] 2026-01-10 04:54:48,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:54:53] 2026-01-10 04:54:48,891 | INFO     | [monitor] control thread has ended
[2026-01-10 05:54:53] 2026-01-10 04:54:53,108 | INFO     | all workflow threads have been joined
[2026-01-10 05:54:53] 2026-01-10 04:54:53,108 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:54:53] 2026-01-10 04:54:53,108 | INFO     | traces error code: 0
[2026-01-10 05:54:53] 2026-01-10 04:54:53,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:54:53] 2026-01-10 04:54:53,160 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:54:53] 2026-01-10 04:54:53,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:54:53] 2026-01-10 04:54:53,165 [wrapper] pilotpid: 4122909
[2026-01-10 05:54:53] 2026-01-10 04:54:53,168 [wrapper] Pilot exit status: 0
[2026-01-10 05:54:53] 2026-01-10 04:54:53,175 [wrapper] pandaids: 6962922612
[2026-01-10 05:54:53] 2026-01-10 04:54:53,192 [wrapper] cleanup supervisor_pilot 4144464 4122910
[2026-01-10 05:54:53] 2026-01-10 04:54:53,195 [wrapper] Test setup, not cleaning
[2026-01-10 05:54:53] 2026-01-10 04:54:53,197 [wrapper] apfmon messages muted
[2026-01-10 05:54:53] 2026-01-10 04:54:53,199 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:54:53] 2026-01-10 04:54:53,201 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:54:53]  *** Error codes and diagnostics ***
[2026-01-10 05:54:53]     "exeErrorCode": 0,
[2026-01-10 05:54:53]     "exeErrorDiag": "",
[2026-01-10 05:54:53]     "pilotErrorCode": 0,
[2026-01-10 05:54:53]     "pilotErrorDiag": "",
[2026-01-10 05:54:53]  *** Listing of results directory ***
[2026-01-10 05:54:53] total 436276
[2026-01-10 05:54:53] -rwx------ 1 boinc boinc     36322 Jan  8 09:20 runpilot2-wrapper.sh
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:23 queuedata.json
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:54:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:59 run_atlas
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:59 job.xml
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc 223259674 Jan 10 03:59 EVNT.47898824._000847.pool.root.1
[2026-01-10 05:54:53] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:59 shared
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc    592403 Jan 10 03:59 input.tar.gz
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:59 start_atlas.sh
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:59 boinc_setup_complete
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc      6440 Jan 10 03:59 init_data.xml
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:59 boinc_lockfile
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc      2518 Jan 10 03:59 pandaJob.out
[2026-01-10 05:54:53] -rw------- 1 boinc boinc    989382 Jan 10 03:59 agis_schedconf.cvmfs.json
[2026-01-10 05:54:53] -rw------- 1 boinc boinc   1516240 Jan 10 03:59 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:54:53] drwx------ 5 boinc boinc      4096 Jan 10 03:59 pilot3
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc       529 Jan 10 05:53 boinc_task_state.xml
[2026-01-10 05:54:53] -rw------- 1 boinc boinc 217019316 Jan 10 05:53 HITS.47898826._022047.pool.root.1
[2026-01-10 05:54:53] -rw------- 1 boinc boinc      1015 Jan 10 05:54 memory_monitor_summary.json
[2026-01-10 05:54:53] -rw------- 1 boinc boinc    294202 Jan 10 05:54 log.47898826._022047.job.log.tgz.1
[2026-01-10 05:54:53] -rw------- 1 boinc boinc      7751 Jan 10 05:54 heartbeat.json
[2026-01-10 05:54:53] -rw------- 1 boinc boinc        95 Jan 10 05:54 pilot_heartbeat.json
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc      8192 Jan 10 05:54 boinc_mmap_file
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc        27 Jan 10 05:54 wrapper_checkpoint.txt
[2026-01-10 05:54:53] -rw------- 1 boinc boinc      4628 Jan 10 05:54 pilotlog.txt
[2026-01-10 05:54:53] -rw------- 1 boinc boinc    990534 Jan 10 05:54 log.47898826._022047.job.log.1
[2026-01-10 05:54:53] -rw------- 1 boinc boinc       357 Jan 10 05:54 output.list
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc       620 Jan 10 05:54 runtime_log
[2026-01-10 05:54:53] -rw------- 1 boinc boinc   1300480 Jan 10 05:54 result.tar.gz
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc      8902 Jan 10 05:54 runtime_log.err
[2026-01-10 05:54:53] -rw------- 1 boinc boinc       660 Jan 10 05:54 62EMDmIR0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxreKDmjM6mHn.diag
[2026-01-10 05:54:53] -rw-r--r-- 1 boinc boinc     11230 Jan 10 05:54 stderr.txt
[2026-01-10 05:54:53] HITS file was successfully produced:
[2026-01-10 05:54:53] -rw------- 1 boinc boinc 217019316 Jan 10 05:53 shared/HITS.pool.root.1
[2026-01-10 05:54:53]  *** Contents of shared directory: ***
[2026-01-10 05:54:53] total 431840
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc 223259674 Jan 10 03:59 ATLAS.root_0
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc    592403 Jan 10 03:59 input.tar.gz
[2026-01-10 05:54:53] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:59 start_atlas.sh
[2026-01-10 05:54:53] -rw------- 1 boinc boinc 217019316 Jan 10 05:53 HITS.pool.root.1
[2026-01-10 05:54:53] -rw------- 1 boinc boinc   1300480 Jan 10 05:54 result.tar.gz
05:54:54 (4119187): run_atlas exited; CPU time 19949.652707
05:54:54 (4119187): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN