Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:10:30 (613028): wrapper (7.7.26015): starting
09:10:30 (613028): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:10:30] Arguments: --nthreads 8
[2026-01-09 09:10:30] Threads: 8
[2026-01-09 09:10:30] Checking for CVMFS
[2026-01-09 09:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:10:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:10:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:10:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:10:30] 2.13.3.0 12275 93510 366792 154945 2 413 30945568 40960000 13150 16776704 25 435186394 99.627 430660072 37155 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 09:10:30] CVMFS is ok
[2026-01-09 09:10:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:10:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:10:30] Further information can be found at the LHC@home message board.
[2026-01-09 09:10:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:10:30] Checking for apptainer binary...
[2026-01-09 09:10:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:10:30] Running /usr/bin/apptainer --version
[2026-01-09 09:10:30] apptainer version 1.4.5-2.el9
[2026-01-09 09:10:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:10:31] c7-11-11.aglt2.org
[2026-01-09 09:10:31] apptainer works
[2026-01-09 09:10:31] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:10:31] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:10:31] Starting ATLAS job with PandaID=6963156799
[2026-01-09 09:10:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:28:55 (1116642): wrapper (7.7.26015): starting
10:28:55 (1116642): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 10:28:55] Arguments: --nthreads 9
[2026-01-09 10:28:55] Threads: 9
[2026-01-09 10:28:55] This job has been restarted, cleaning up previous attempt
[2026-01-09 10:28:55] Checking for CVMFS
[2026-01-09 10:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:28:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:28:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:28:55] 2.13.3.0 12275 93588 361216 154948 3 140 31602799 40960000 13738 16776704 25 435713751 99.627 430708223 37156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 10:28:55] CVMFS is ok
[2026-01-09 10:28:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:28:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:28:55] Further information can be found at the LHC@home message board.
[2026-01-09 10:28:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:28:55] Checking for apptainer binary...
[2026-01-09 10:28:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:28:55] Running /usr/bin/apptainer --version
[2026-01-09 10:28:55] apptainer version 1.4.5-2.el9
[2026-01-09 10:28:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:28:55] c7-11-11.aglt2.org
[2026-01-09 10:28:55] apptainer works
[2026-01-09 10:28:55] Set ATHENA_PROC_NUMBER=9
[2026-01-09 10:28:55] Set ATHENA_CORE_NUMBER=9
[2026-01-09 10:28:55] Starting ATLAS job with PandaID=6963156799
[2026-01-09 10:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:04:44]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:04:44] 2026-01-09 20:04:05,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,141 | INFO     | time since job start (16499s) is within the limit (349056.0s)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,700 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 15:04:44] 2026-01-09 20:04:07,704 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.8074687499993
[2026-01-09 15:04:44] 2026-01-09 20:04:07,713 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963156799/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,714 | INFO     | extracted standard info from prmon json
[2026-01-09 15:04:44] 2026-01-09 20:04:07,714 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:04:44] 2026-01-09 20:04:07,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:04:44] 2026-01-09 20:04:07,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:04:44] 2026-01-09 20:04:07,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:04:44] 2026-01-09 20:04:07,729 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:04:44] 2026-01-09 20:04:07,729 | INFO     | sum of square deviations: 6103714176.651831
[2026-01-09 15:04:44] 2026-01-09 20:04:07,731 | INFO     | sum of deviations: -44590164217.39259
[2026-01-09 15:04:44] 2026-01-09 20:04:07,731 | INFO     | mean x: 1767980782.8592594
[2026-01-09 15:04:44] 2026-01-09 20:04:07,731 | INFO     | mean y: 2580056.437037037
[2026-01-09 15:04:44] 2026-01-09 20:04:07,731 | INFO     | intersect: 12918413131.067194
[2026-01-09 15:04:44] 2026-01-09 20:04:07,732 | INFO     | chi2: 2.8410192467276603
[2026-01-09 15:04:44] 2026-01-09 20:04:07,732 | INFO     | sum of square deviations: 5770909613.494318
[2026-01-09 15:04:44] 2026-01-09 20:04:07,733 | INFO     | sum of deviations: -6743315974.867919
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | mean x: 1767980630.3660378
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | mean y: 2597206.7924528304
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | intersect: 2068485052.293725
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | chi2: 1.2558495125246938
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | current chi2=1.2558495125246938 (change=55.79581116983966 %)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,734 | INFO     | sum of square deviations: 5450333623.150002
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | sum of deviations: -6822105851.949999
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | mean x: 1767980477.85
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | mean y: 2597168.3346153847
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | intersect: 2215553438.1754007
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | chi2: 1.2553246939824434
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | current chi2=1.2553246939824434 (change=0.04178992283839216 %)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,736 | INFO     | right removable region: 259
[2026-01-09 15:04:44] 2026-01-09 20:04:07,737 | INFO     | sum of square deviations: 5770850443.494318
[2026-01-09 15:04:44] 2026-01-09 20:04:07,738 | INFO     | sum of deviations: -78368546639.61127
[2026-01-09 15:04:44] 2026-01-09 20:04:07,738 | INFO     | mean x: 1767980935.3660378
[2026-01-09 15:04:44] 2026-01-09 20:04:07,739 | INFO     | mean y: 2595389.5320754717
[2026-01-09 15:04:44] 2026-01-09 20:04:07,739 | INFO     | intersect: 24011898307.332306
[2026-01-09 15:04:44] 2026-01-09 20:04:07,739 | INFO     | chi2: 1.7127518170947966
[2026-01-09 15:04:44] 2026-01-09 20:04:07,739 | INFO     | current chi2=1.7127518170947966 (change=39.713473639167475 %)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,739 | INFO     | sum of square deviations: 5450344852.288456
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | sum of deviations: -74452940911.2885
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | mean x: 1767981087.8653846
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | mean y: 2593522.934615385
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | intersect: 24153614244.467216
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | chi2: 1.7129724268036488
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | current chi2=1.7129724268036488 (change=-0.012880424743987979 %)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,741 | INFO     | left removable region: 20
[2026-01-09 15:04:44] 2026-01-09 20:04:07,742 | INFO     | sum of square deviations: 4233504887.330558
[2026-01-09 15:04:44] 2026-01-09 20:04:07,743 | INFO     | sum of deviations: -27892546094.87867
[2026-01-09 15:04:44] 2026-01-09 20:04:07,743 | INFO     | mean x: 1767981057.3640168
[2026-01-09 15:04:44] 2026-01-09 20:04:07,743 | INFO     | mean y: 2606803.6652719667
[2026-01-09 15:04:44] 2026-01-09 20:04:07,743 | INFO     | intersect: 11650991404.561022
[2026-01-09 15:04:44] 2026-01-09 20:04:07,743 | INFO     | chi2: 0.09025529113936051
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | current memory leak: -6.59 B/s (using 239 data points, chi2=0.09)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | could have reported an average CPU frequency of 3288 MHz (13 samples)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | ..............................
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | . Timing measurements:
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | . get job = 0 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | . initial setup = 1 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | . payload setup = 5 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,744 | INFO     | . stage-in = 0 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,745 | INFO     | . payload execution = 16453 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,745 | INFO     | . stage-out = 3 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,745 | INFO     | . log creation = 0 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,745 | INFO     | ..............................
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | 
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | job summary report
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | --------------------------------------------------
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | PanDA job id: 6963156799
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | task id: 47898826
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | errors: (none)
[2026-01-09 15:04:44] 2026-01-09 20:04:07,902 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | pilot state: finished 
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | transexitcode: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | exeerrorcode: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | exeerrordiag: 
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | exitcode: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | exitmsg: OK
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | cpuconsumptiontime: 45865 s
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | nevents: 400
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | neventsw: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | pid: 1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | pgrp: 1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | corecount: 9
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | event service: False
[2026-01-09 15:04:44] 2026-01-09 20:04:07,903 | INFO     | sizes: {0: 2283800, 1: 2283999, 8: 2284261, 12: 2284289, 16464: 2316447, 16468: 2325445, 16471: 2325629, 16482: 2325823}
[2026-01-09 15:04:44] 2026-01-09 20:04:07,904 | INFO     | --------------------------------------------------
[2026-01-09 15:04:44] 2026-01-09 20:04:07,904 | INFO     | 
[2026-01-09 15:04:44] 2026-01-09 20:04:07,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | job 6963156799 has completed (purged errors)
[2026-01-09 15:04:44] 2026-01-09 20:04:08,043 | INFO     | overall cleanup function is called
[2026-01-09 15:04:44] 2026-01-09 20:04:09,065 | INFO     | --- collectZombieJob: --- 10, [1148848]
[2026-01-09 15:04:44] 2026-01-09 20:04:09,065 | INFO     | zombie collector waiting for pid 1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:09,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:04:44] 2026-01-09 20:04:09,065 | INFO     | collected zombie processes
[2026-01-09 15:04:44] 2026-01-09 20:04:09,065 | INFO     | will attempt to kill all subprocesses of pid=1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:10,131 | INFO     | process IDs to be killed: [1148848] (in reverse order)
[2026-01-09 15:04:44] 2026-01-09 20:04:10,306 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:04:44] 2026-01-09 20:04:10,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:04:44] 2026-01-09 20:04:10,322 | INFO     | did not find any defunct processes belonging to 1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:10,338 | INFO     | did not find any defunct processes belonging to 1148848
[2026-01-09 15:04:44] 2026-01-09 20:04:10,339 | INFO     | ready for new job
[2026-01-09 15:04:44] 2026-01-09 20:04:10,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:04:44] 2026-01-09 20:04:10,341 | INFO     | ***************************************
[2026-01-09 15:04:44] 2026-01-09 20:04:10,342 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:04:44] 2026-01-09 20:04:10,342 | INFO     | ***************************************
[2026-01-09 15:04:44] 2026-01-09 20:04:10,342 | INFO     | 
[2026-01-09 15:04:44] 2026-01-09 20:04:10,366 | INFO     | architecture information:
[2026-01-09 15:04:44] 2026-01-09 20:04:10,382 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:04:44] 2026-01-09 20:04:10,507 | INFO     | cat /etc/os-release:
[2026-01-09 15:04:44] NAME="CentOS Linux"
[2026-01-09 15:04:44] VERSION="7 (Core)"
[2026-01-09 15:04:44] ID="centos"
[2026-01-09 15:04:44] ID_LIKE="rhel fedora"
[2026-01-09 15:04:44] VERSION_ID="7"
[2026-01-09 15:04:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:04:44] ANSI_COLOR="0;31"
[2026-01-09 15:04:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:04:44] HOME_URL="https://www.centos.org/"
[2026-01-09 15:04:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:04:44] 
[2026-01-09 15:04:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:04:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:04:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:04:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:04:44] 
[2026-01-09 15:04:44] 2026-01-09 20:04:10,507 | INFO     | ***************************************
[2026-01-09 15:04:44] 2026-01-09 20:04:11,011 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 15:04:44] 2026-01-09 20:04:11,040 | INFO     | sufficient remaining disk space (84879081472 B)
[2026-01-09 15:04:44] 2026-01-09 20:04:11,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:04:44] 2026-01-09 20:04:11,041 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:04:44] 2026-01-09 20:04:11,041 | INFO     | update_server=False
[2026-01-09 15:04:44] 2026-01-09 20:04:11,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:04:44] 2026-01-09 20:04:11,108 | INFO     | all job control threads have been joined
[2026-01-09 15:04:44] 2026-01-09 20:04:11,934 | INFO     | all data control threads have been joined
[2026-01-09 15:04:44] 2026-01-09 20:04:12,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:04:44] 2026-01-09 20:04:12,007 | INFO     | aborting loop
[2026-01-09 15:04:44] 2026-01-09 20:04:12,048 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,058 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,107 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,112 | INFO     | all payload control threads have been joined
[2026-01-09 15:04:44] 2026-01-09 20:04:12,116 | INFO     | [job] control thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:04:44] 2026-01-09 20:04:12,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:04:44] 2026-01-09 20:04:12,705 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,711 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:04:44] 2026-01-09 20:04:12,938 | INFO     | [job] validate thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:12,941 | INFO     | [data] control thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,008 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,013 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,131 | INFO     | [payload] control thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,440 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,604 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:13,928 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:14,167 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:16,157 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:04:44] 2026-01-09 20:04:36,707 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:04:44] 2026-01-09 20:04:38,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139737780520768)>', '<ExcThread(monitor, started 139737511728896)>']
[2026-01-09 15:04:44] 2026-01-09 20:04:40,741 | INFO     | PID=1128305 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 15:04:44] 2026-01-09 20:04:40,741 | INFO     | .. there are 16 such processes running
[2026-01-09 15:04:44] 2026-01-09 20:04:40,741 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:04:44] 2026-01-09 20:04:40,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:04:44] 2026-01-09 20:04:40,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:04:44] 2026-01-09 20:04:40,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:04:44] 2026-01-09 20:04:40,742 | INFO     | [monitor] control thread has ended
[2026-01-09 15:04:44] 2026-01-09 20:04:43,268 | INFO     | all workflow threads have been joined
[2026-01-09 15:04:44] 2026-01-09 20:04:43,268 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:04:44] 2026-01-09 20:04:43,268 | INFO     | traces error code: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:43,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:04:44] 2026-01-09 20:04:43,659 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:04:44] 2026-01-09 20:04:43,662 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:04:44] 2026-01-09 20:04:43,665 [wrapper] pilotpid: 1128305
[2026-01-09 15:04:44] 2026-01-09 20:04:43,669 [wrapper] Pilot exit status: 0
[2026-01-09 15:04:44] 2026-01-09 20:04:43,710 [wrapper] pandaids: 6963156799 6963156799
[2026-01-09 15:04:44] 2026-01-09 20:04:44,097 [wrapper] cleanup supervisor_pilot 2106064 1128306
[2026-01-09 15:04:44] 2026-01-09 20:04:44,132 [wrapper] Test setup, not cleaning
[2026-01-09 15:04:44] 2026-01-09 20:04:44,149 [wrapper] apfmon messages muted
[2026-01-09 15:04:44] 2026-01-09 20:04:44,160 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:04:44] 2026-01-09 20:04:44,214 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:04:44]  *** Error codes and diagnostics ***
[2026-01-09 15:04:44]     "exeErrorCode": 0,
[2026-01-09 15:04:44]     "exeErrorDiag": "",
[2026-01-09 15:04:44]     "pilotErrorCode": 0,
[2026-01-09 15:04:44]     "pilotErrorDiag": "",
[2026-01-09 15:04:44]  *** Listing of results directory ***
[2026-01-09 15:04:44] total 665288
[2026-01-09 15:04:44] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 15:04:44] -rwx------. 1 boincer umatlas     36322 Jan  8 16:47 runpilot2-wrapper.sh
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas       100 Jan  9 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:04:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 09:10 run_atlas
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas       105 Jan  9 09:10 job.xml
[2026-01-09 15:04:44] -rw-r--r--. 3 boincer umatlas 226762747 Jan  9 09:10 EVNT.47898824._001213.pool.root.1
[2026-01-09 15:04:44] -rw-r--r--. 3 boincer umatlas 226762747 Jan  9 09:10 ATLAS.root_0
[2026-01-09 15:04:44] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:10 input.tar.gz
[2026-01-09 15:04:44] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:10 start_atlas.sh
[2026-01-09 15:04:44] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 09:10 shared
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas         0 Jan  9 09:10 boinc_lockfile
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 10:28 pandaJob.out
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas        57 Jan  9 10:28 setup.sh.local
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas    989377 Jan  9 10:29 agis_schedconf.cvmfs.json
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas 218425716 Jan  9 15:01 HITS.47898826._031948.pool.root.1
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas       531 Jan  9 15:01 boinc_task_state.xml
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas      6902 Jan  9 15:02 init_data.xml
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas      1041 Jan  9 15:03 memory_monitor_summary.json
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas   1516240 Jan  9 15:03 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas    519571 Jan  9 15:03 log.47898826._031948.job.log.tgz.1
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas        96 Jan  9 15:04 pilot_heartbeat.json
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas      7797 Jan  9 15:04 heartbeat.json
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 15:04 boinc_mmap_file
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas        28 Jan  9 15:04 wrapper_checkpoint.txt
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas      4824 Jan  9 15:04 pilotlog.txt
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas   2177534 Jan  9 15:04 log.47898826._031948.job.log.1
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas       357 Jan  9 15:04 output.list
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas       620 Jan  9 15:04 runtime_log
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas   2713600 Jan  9 15:04 result.tar.gz
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 15:04 runtime_log.err
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas       784 Jan  9 15:04 1RZLDmC2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsXlKDmsZWqcn.diag
[2026-01-09 15:04:44] -rw-r--r--. 1 boincer umatlas     23374 Jan  9 15:04 stderr.txt
[2026-01-09 15:04:44] HITS file was successfully produced:
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas 218425716 Jan  9 15:01 shared/HITS.pool.root.1
[2026-01-09 15:04:44]  *** Contents of shared directory: ***
[2026-01-09 15:04:44] total 438008
[2026-01-09 15:04:44] -rw-r--r--. 3 boincer umatlas 226762747 Jan  9 09:10 ATLAS.root_0
[2026-01-09 15:04:44] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:10 input.tar.gz
[2026-01-09 15:04:44] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:10 start_atlas.sh
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas 218425716 Jan  9 15:01 HITS.pool.root.1
[2026-01-09 15:04:44] -rw-------. 1 boincer umatlas   2713600 Jan  9 15:04 result.tar.gz
15:04:46 (1116642): run_atlas exited; CPU time 46217.120772
15:04:46 (1116642): called boinc_finish(0)

</stderr_txt>
]]>

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