Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:30:31 (21349): wrapper (7.7.26015): starting
07:30:31 (21349): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 07:30:31] Arguments: --nthreads 12
[2026-01-09 07:30:31] Threads: 12
[2026-01-09 07:30:31] Checking for CVMFS
[2026-01-09 07:30:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:30:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:30:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:30:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:30:31] 2.11.2.0 6893 180957 98940 154942 2 59 17716103 20275200 1 130560 0 69820515 99.906 10314977 35089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 07:30:31] CVMFS is ok
[2026-01-09 07:30:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:30:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:30:31] Further information can be found at the LHC@home message board.
[2026-01-09 07:30:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:30:31] Checking for apptainer binary...
[2026-01-09 07:30:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:30:31] Running /usr/bin/apptainer --version
[2026-01-09 07:30:31] apptainer version 1.3.2-1.el7
[2026-01-09 07:30:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:30:33] c-205-3.aglt2.org
[2026-01-09 07:30:33] apptainer works
[2026-01-09 07:30:33] Set ATHENA_PROC_NUMBER=12
[2026-01-09 07:30:33] Set ATHENA_CORE_NUMBER=12
[2026-01-09 07:30:33] Starting ATLAS job with PandaID=6963160821
[2026-01-09 07:30:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:11:03]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:11:03] 2026-01-09 14:10:08,318 | INFO     | adding to output.list: log.47898826._032644.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/42/log.47898826._032644.job.log.tg
[2026-01-09 09:11:03] 2026-01-09 14:10:08,319 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 09:11:03] 2026-01-09 14:10:08,319 | INFO     | summary of transferred files:
[2026-01-09 09:11:03] 2026-01-09 14:10:08,320 | INFO     |  -- lfn=log.47898826._032644.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 09:11:03] 2026-01-09 14:10:08,320 | INFO     | stage-out finished correctly
[2026-01-09 09:11:03] 2026-01-09 14:10:08,669 | INFO     | time since job start (5959s) is within the limit (349056.0s)
[2026-01-09 09:11:03] 2026-01-09 14:10:09,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 09:11:03] 2026-01-09 14:10:10,676 | INFO     | time since job start (5961s) is within the limit (349056.0s)
[2026-01-09 09:11:03] 2026-01-09 14:10:12,242 | INFO     | job 6963160821 has state=finished
[2026-01-09 09:11:03] 2026-01-09 14:10:12,242 | INFO     | preparing for final server update for job 6963160821 in state='finished'
[2026-01-09 09:11:03] 2026-01-09 14:10:12,248 | INFO     | this job has now completed (state=finished)
[2026-01-09 09:11:03] 2026-01-09 14:10:12,249 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 09:11:03] 2026-01-09 14:10:12,249 | INFO     | log transfer has been attempted: DONE
[2026-01-09 09:11:03] 2026-01-09 14:10:12,249 | INFO     | job 6963160821 has finished - writing final server update
[2026-01-09 09:11:03] 2026-01-09 14:10:12,249 | INFO     | total number of processed events: 400 (read)
[2026-01-09 09:11:03] 2026-01-09 14:10:12,250 | INFO     | executing command: lscpu
[2026-01-09 09:11:03] 2026-01-09 14:10:12,276 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 09:11:03] 2026-01-09 14:10:12,678 | INFO     | time since job start (5963s) is within the limit (349056.0s)
[2026-01-09 09:11:03] 2026-01-09 14:10:12,679 | INFO     | 5966s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 09:11:03] 2026-01-09 14:10:13,954 | WARNING  | process 31475 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 09:11:03] 2026-01-09 14:10:13,955 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160821/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:11:03] 2026-01-09 14:10:13,955 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160821/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:11:03] 2026-01-09 14:10:13,956 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 09:11:03] 2026-01-09 14:10:13,956 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 09:11:03] 2026-01-09 14:10:13,956 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4519373 B
[2026-01-09 09:11:03] 2026-01-09 14:10:13,956 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16078 B
[2026-01-09 09:11:03] 2026-01-09 14:10:13,957 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 09:11:03] 2026-01-09 14:10:14,684 | INFO     | time since job start (5965s) is within the limit (349056.0s)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,690 | INFO     | time since job start (5967s) is within the limit (349056.0s)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,974 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 09:11:03] 2026-01-09 14:10:16,982 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-09 09:11:03] 2026-01-09 14:10:16,984 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160821/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,985 | INFO     | extracted standard info from prmon json
[2026-01-09 09:11:03] 2026-01-09 14:10:16,985 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:11:03] 2026-01-09 14:10:16,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:11:03] 2026-01-09 14:10:16,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:11:03] 2026-01-09 14:10:16,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:11:03] 2026-01-09 14:10:16,988 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:11:03] 2026-01-09 14:10:16,988 | INFO     | sum of square deviations: 233641590.0
[2026-01-09 09:11:03] 2026-01-09 14:10:16,988 | INFO     | sum of deviations: -943194078.0000001
[2026-01-09 09:11:03] 2026-01-09 14:10:16,989 | INFO     | mean x: 1767964928.0
[2026-01-09 09:11:03] 2026-01-09 14:10:16,989 | INFO     | mean y: 2686459.263736264
[2026-01-09 09:11:03] 2026-01-09 14:10:16,989 | INFO     | intersect: 7139832077.050777
[2026-01-09 09:11:03] 2026-01-09 14:10:16,989 | INFO     | chi2: 0.03495184733690902
[2026-01-09 09:11:03] 2026-01-09 14:10:16,990 | INFO     | current memory leak: -4.04 B/s (using 91 data points, chi2=0.03)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,990 | INFO     | could have reported an average CPU frequency of 2118 MHz (7 samples)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,990 | INFO     | sufficient remaining disk space (29428285440 B)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,991 | INFO     | ..............................
[2026-01-09 09:11:03] 2026-01-09 14:10:16,991 | INFO     | . Timing measurements:
[2026-01-09 09:11:03] 2026-01-09 14:10:16,991 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 09:11:03] 2026-01-09 14:10:16,991 | INFO     | . get job = 0 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,991 | INFO     | . initial setup = 2 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | . payload setup = 7 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | . stage-in = 0 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | . payload execution = 5931 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | . stage-out = 0 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | . log creation = 0 s
[2026-01-09 09:11:03] 2026-01-09 14:10:16,992 | INFO     | ..............................
[2026-01-09 09:11:03] 2026-01-09 14:10:17,078 | INFO     | 
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | job summary report
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | --------------------------------------------------
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | PanDA job id: 6963160821
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | task id: 47898826
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | errors: (none)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,079 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:11:03] 2026-01-09 14:10:17,080 | INFO     | pilot state: finished 
[2026-01-09 09:11:03] 2026-01-09 14:10:17,080 | INFO     | transexitcode: 0
[2026-01-09 09:11:03] 2026-01-09 14:10:17,080 | INFO     | exeerrorcode: 0
[2026-01-09 09:11:03] 2026-01-09 14:10:17,080 | INFO     | exeerrordiag: 
[2026-01-09 09:11:03] 2026-01-09 14:10:17,081 | INFO     | exitcode: 0
[2026-01-09 09:11:03] 2026-01-09 14:10:17,081 | INFO     | exitmsg: OK
[2026-01-09 09:11:03] 2026-01-09 14:10:17,081 | INFO     | cpuconsumptiontime: 65913 s
[2026-01-09 09:11:03] 2026-01-09 14:10:17,081 | INFO     | nevents: 400
[2026-01-09 09:11:03] 2026-01-09 14:10:17,081 | INFO     | neventsw: 0
[2026-01-09 09:11:03] 2026-01-09 14:10:17,082 | INFO     | pid: 31475
[2026-01-09 09:11:03] 2026-01-09 14:10:17,082 | INFO     | pgrp: 31475
[2026-01-09 09:11:03] 2026-01-09 14:10:17,082 | INFO     | corecount: 12
[2026-01-09 09:11:03] 2026-01-09 14:10:17,082 | INFO     | event service: False
[2026-01-09 09:11:03] 2026-01-09 14:10:17,083 | INFO     | sizes: {0: 2283800, 1: 2283999, 6: 2284261, 11: 2284289, 5943: 2310984, 5944: 2320166, 5952: 2320304}
[2026-01-09 09:11:03] 2026-01-09 14:10:17,083 | INFO     | --------------------------------------------------
[2026-01-09 09:11:03] 2026-01-09 14:10:17,083 | INFO     | 
[2026-01-09 09:11:03] 2026-01-09 14:10:17,083 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6963160821: 4827630 B (within 4404019200 B limit)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,083 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 09:11:03] 2026-01-09 14:10:17,084 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6963160821/HITS.47898826._032644.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,084 | INFO     | total size of present files: 0 B (workdir size: 4827630 B)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,084 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6963160821/HITS.47898826._032644.pool.root.1 since it does not exist
[2026-01-09 09:11:03] 2026-01-09 14:10:17,106 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,106 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,107 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,107 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,109 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,110 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:11:03] 2026-01-09 14:10:17,110 | INFO     | job 6963160821 has completed (purged errors)
[2026-01-09 09:11:03] 2026-01-09 14:10:17,110 | INFO     | overall cleanup function is called
[2026-01-09 09:11:03] 2026-01-09 14:10:17,183 | INFO     | number of running child processes to parent process 31475: 1
[2026-01-09 09:11:03] 2026-01-09 14:10:17,183 | INFO     | maximum number of monitored processes: 6
[2026-01-09 09:11:03] 2026-01-09 14:10:17,183 | INFO     | aborting job monitoring since job object (job id=6963160821) has expired
[2026-01-09 09:11:03] 2026-01-09 14:10:18,117 | INFO     | --- collectZombieJob: --- 10, [31475]
[2026-01-09 09:11:03] 2026-01-09 14:10:18,117 | INFO     | zombie collector waiting for pid 31475
[2026-01-09 09:11:03] 2026-01-09 14:10:18,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:11:03] 2026-01-09 14:10:18,117 | INFO     | collected zombie processes
[2026-01-09 09:11:03] 2026-01-09 14:10:18,117 | INFO     | will attempt to kill all subprocesses of pid=31475
[2026-01-09 09:11:03] 2026-01-09 14:10:18,208 | INFO     | process IDs to be killed: [31475] (in reverse order)
[2026-01-09 09:11:03] 2026-01-09 14:10:18,259 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:11:03] 2026-01-09 14:10:18,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:11:03] 2026-01-09 14:10:18,263 | INFO     | did not find any defunct processes belonging to 31475
[2026-01-09 09:11:03] 2026-01-09 14:10:18,266 | INFO     | did not find any defunct processes belonging to 31475
[2026-01-09 09:11:03] 2026-01-09 14:10:18,266 | INFO     | ready for new job
[2026-01-09 09:11:03] 2026-01-09 14:10:18,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:11:03] 2026-01-09 14:10:18,267 | INFO     | ***************************************
[2026-01-09 09:11:03] 2026-01-09 14:10:18,267 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:11:03] 2026-01-09 14:10:18,268 | INFO     | ***************************************
[2026-01-09 09:11:03] 2026-01-09 14:10:18,268 | INFO     | 
[2026-01-09 09:11:03] 2026-01-09 14:10:18,268 | INFO     | architecture information:
[2026-01-09 09:11:03] 2026-01-09 14:10:18,269 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:11:03] 2026-01-09 14:10:18,284 | INFO     | cat /etc/os-release:
[2026-01-09 09:11:03] NAME="CentOS Linux"
[2026-01-09 09:11:03] VERSION="7 (Core)"
[2026-01-09 09:11:03] ID="centos"
[2026-01-09 09:11:03] ID_LIKE="rhel fedora"
[2026-01-09 09:11:03] VERSION_ID="7"
[2026-01-09 09:11:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:11:03] ANSI_COLOR="0;31"
[2026-01-09 09:11:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:11:03] HOME_URL="https://www.centos.org/"
[2026-01-09 09:11:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:11:03] 
[2026-01-09 09:11:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:11:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:11:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:11:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:11:03] 
[2026-01-09 09:11:03] 2026-01-09 14:10:18,284 | INFO     | ***************************************
[2026-01-09 09:11:03] 2026-01-09 14:10:18,786 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 09:11:03] 2026-01-09 14:10:18,802 | INFO     | sufficient remaining disk space (29434576896 B)
[2026-01-09 09:11:03] 2026-01-09 14:10:18,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:11:03] 2026-01-09 14:10:18,802 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:11:03] 2026-01-09 14:10:18,803 | INFO     | update_server=False
[2026-01-09 09:11:03] 2026-01-09 14:10:18,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:11:03] 2026-01-09 14:10:18,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:11:03] 2026-01-09 14:10:18,803 | INFO     | aborting loop
[2026-01-09 09:11:03] 2026-01-09 14:10:18,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:11:03] 2026-01-09 14:10:18,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:11:03] 2026-01-09 14:10:19,401 | INFO     | all job control threads have been joined
[2026-01-09 09:11:03] 2026-01-09 14:10:19,696 | INFO     | all data control threads have been joined
[2026-01-09 09:11:03] 2026-01-09 14:10:19,804 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:19,809 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:19,810 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:19,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:11:03] 2026-01-09 14:10:19,927 | INFO     | all payload control threads have been joined
[2026-01-09 09:11:03] 2026-01-09 14:10:20,012 | INFO     | [job] validate thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,406 | INFO     | [job] control thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,477 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,701 | INFO     | [data] control thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,713 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,727 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,781 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,918 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:20,932 | INFO     | [payload] control thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:21,226 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:21,369 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:23,828 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:29,400 | INFO     | job.realtimelogging is not enabled
[2026-01-09 09:11:03] 2026-01-09 14:10:30,405 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:11:03] 2026-01-09 14:10:49,889 | INFO     | PID=25061 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:11:03] 2026-01-09 14:10:49,889 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:11:03] 2026-01-09 14:10:49,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:11:03] 2026-01-09 14:10:49,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:11:03] 2026-01-09 14:10:58,262 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:11:03] 2026-01-09 14:10:58,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992217519936)>', '<ExcThread(monitor, started 139991481042688)>']
[2026-01-09 09:11:03] 2026-01-09 14:10:58,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:11:03] 2026-01-09 14:10:58,935 | INFO     | [monitor] control thread has ended
[2026-01-09 09:11:03] 2026-01-09 14:11:03,438 | INFO     | all workflow threads have been joined
[2026-01-09 09:11:03] 2026-01-09 14:11:03,438 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:11:03] 2026-01-09 14:11:03,438 | INFO     | traces error code: 0
[2026-01-09 09:11:03] 2026-01-09 14:11:03,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:11:03] 2026-01-09 14:11:03,523 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:11:03] 2026-01-09 14:11:03,526 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:11:03] 2026-01-09 14:11:03,530 [wrapper] pilotpid: 25061
[2026-01-09 09:11:03] 2026-01-09 14:11:03,534 [wrapper] Pilot exit status: 0
[2026-01-09 09:11:03] 2026-01-09 14:11:03,550 [wrapper] pandaids: 6963160821
[2026-01-09 09:11:03] 2026-01-09 14:11:03,597 [wrapper] cleanup supervisor_pilot 30720 25062
[2026-01-09 09:11:03] 2026-01-09 14:11:03,601 [wrapper] Test setup, not cleaning
[2026-01-09 09:11:03] 2026-01-09 14:11:03,605 [wrapper] apfmon messages muted
[2026-01-09 09:11:03] 2026-01-09 14:11:03,608 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:11:03] 2026-01-09 14:11:03,612 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:11:03]  *** Error codes and diagnostics ***
[2026-01-09 09:11:03]     "exeErrorCode": 0,
[2026-01-09 09:11:03]     "exeErrorDiag": "",
[2026-01-09 09:11:03]     "pilotErrorCode": 0,
[2026-01-09 09:11:03]     "pilotErrorDiag": "",
[2026-01-09 09:11:03]  *** Listing of results directory ***
[2026-01-09 09:11:03] total 441636
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 09:11:03] -rwx------ 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas       100 Jan  9 07:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:11:03] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 07:30 run_atlas
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas       105 Jan  9 07:30 job.xml
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas 226284033 Jan  9 07:30 EVNT.47898824._001261.pool.root.1
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:30 start_atlas.sh
[2026-01-09 09:11:03] drwxrwx--x 2 boincer umatlas      4096 Jan  9 07:30 shared
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 07:30 input.tar.gz
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas         0 Jan  9 07:30 boinc_lockfile
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 07:30 pandaJob.out
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas        57 Jan  9 07:30 setup.sh.local
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas    989377 Jan  9 07:30 agis_schedconf.cvmfs.json
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas   1516240 Jan  9 07:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:11:03] drwx------ 5 boincer umatlas      4096 Jan  9 07:30 pilot3
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas 219505110 Jan  9 09:09 HITS.47898826._032644.pool.root.1
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 09:09 init_data.xml
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas       529 Jan  9 09:09 boinc_task_state.xml
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas      1046 Jan  9 09:10 memory_monitor_summary.json
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas    415993 Jan  9 09:10 log.47898826._032644.job.log.tgz.1
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas        95 Jan  9 09:10 pilot_heartbeat.json
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas      7843 Jan  9 09:10 heartbeat.json
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 09:10 boinc_mmap_file
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas        27 Jan  9 09:10 wrapper_checkpoint.txt
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas      4818 Jan  9 09:11 pilotlog.txt
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas    848094 Jan  9 09:11 log.47898826._032644.job.log.1
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas       357 Jan  9 09:11 output.list
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas       620 Jan  9 09:11 runtime_log
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas   1280000 Jan  9 09:11 result.tar.gz
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas       658 Jan  9 09:11 UEKMDmq0Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlFgKDmhBrpjm.diag
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas      9339 Jan  9 09:11 runtime_log.err
[2026-01-09 09:11:03] -rw-r--r-- 1 boincer umatlas     22579 Jan  9 09:11 stderr.txt
[2026-01-09 09:11:03] HITS file was successfully produced:
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas 219505110 Jan  9 09:09 shared/HITS.pool.root.1
[2026-01-09 09:11:03]  *** Contents of shared directory: ***
[2026-01-09 09:11:03] total 437200
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas 226284033 Jan  9 07:30 ATLAS.root_0
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:30 start_atlas.sh
[2026-01-09 09:11:03] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 07:30 input.tar.gz
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas 219505110 Jan  9 09:09 HITS.pool.root.1
[2026-01-09 09:11:03] -rw------- 1 boincer umatlas   1280000 Jan  9 09:11 result.tar.gz
09:11:05 (21349): run_atlas exited; CPU time 65904.353925
09:11:05 (21349): called boinc_finish(0)

</stderr_txt>
]]>

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