Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:50:32 (3782026): wrapper (7.7.26015): starting
20:50:32 (3782026): wrapper: running run_atlas (--nthreads 2)
[2026-01-09 20:50:32] Arguments: --nthreads 2
[2026-01-09 20:50:32] Threads: 2
[2026-01-09 20:50:32] Checking for CVMFS
[2026-01-09 20:50:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:50:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:50:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:50:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:50:33] 2.9.2.0 3263997 2801 57660 154955 3 57 18908786 36864001 0 130560 0 1332586 99.983 109620 6197 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:50:33] CVMFS is ok
[2026-01-09 20:50:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:50:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:50:33] Further information can be found at the LHC@home message board.
[2026-01-09 20:50:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:50:33] Checking for apptainer binary...
[2026-01-09 20:50:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:50:33] Running /usr/bin/apptainer --version
[2026-01-09 20:50:33] apptainer version 1.4.1-1.1
[2026-01-09 20:50:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:50:33] magicA252b
[2026-01-09 20:50:33] apptainer works
[2026-01-09 20:50:33] Set ATHENA_PROC_NUMBER=2
[2026-01-09 20:50:33] Set ATHENA_CORE_NUMBER=2
[2026-01-09 20:50:33] Starting ATLAS job with PandaID=6963194342
[2026-01-09 20:50:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:39:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:39:05] 2026-01-09 22:38:15,232 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:39:05] 2026-01-09 22:38:15,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:39:05] 2026-01-09 22:38:15,233 | INFO     | did not find any defunct processes belonging to 3792152
[2026-01-09 23:39:05] 2026-01-09 22:38:15,233 | INFO     | did not find any defunct processes belonging to 3792152
[2026-01-09 23:39:05] 2026-01-09 22:38:15,233 | INFO     | ready for new job
[2026-01-09 23:39:05] 2026-01-09 22:38:15,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | ***************************************
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | ***************************************
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | 
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | architecture information:
[2026-01-09 23:39:05] 2026-01-09 22:38:15,234 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:39:05] 2026-01-09 22:38:15,242 | INFO     | cat /etc/os-release:
[2026-01-09 23:39:05] NAME="CentOS Linux"
[2026-01-09 23:39:05] VERSION="7 (Core)"
[2026-01-09 23:39:05] ID="centos"
[2026-01-09 23:39:05] ID_LIKE="rhel fedora"
[2026-01-09 23:39:05] VERSION_ID="7"
[2026-01-09 23:39:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:39:05] ANSI_COLOR="0;31"
[2026-01-09 23:39:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:39:05] HOME_URL="https://www.centos.org/"
[2026-01-09 23:39:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:39:05] 
[2026-01-09 23:39:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:39:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:39:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:39:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:39:05] 
[2026-01-09 23:39:05] 2026-01-09 22:38:15,242 | INFO     | ***************************************
[2026-01-09 23:39:05] 2026-01-09 22:38:15,745 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | INFO     | sufficient remaining disk space (341639692288 B)
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | INFO     | update_server=False
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:39:05] 2026-01-09 22:38:15,757 | INFO     | aborting loop
[2026-01-09 23:39:05] 2026-01-09 22:38:15,893 | INFO     | all data control threads have been joined
[2026-01-09 23:39:05] 2026-01-09 22:38:16,027 | INFO     | all job control threads have been joined
[2026-01-09 23:39:05] 2026-01-09 22:38:16,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:39:05] 2026-01-09 22:38:16,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:39:05] 2026-01-09 22:38:16,761 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:16,762 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:16,763 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:16,899 | INFO     | [data] control thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:16,951 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:16,971 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,033 | INFO     | [job] control thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,098 | INFO     | all payload control threads have been joined
[2026-01-09 23:39:05] 2026-01-09 22:38:17,699 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,736 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,771 | INFO     | [job] validate thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,979 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:17,997 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:18,104 | INFO     | [payload] control thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:18,337 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:20,353 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:26,027 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:39:05] 2026-01-09 22:38:27,033 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:39:05] 2026-01-09 22:38:46,728 | INFO     | PID=3785731 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:39:05] 2026-01-09 22:38:46,728 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:39:05] 2026-01-09 22:38:46,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:39:05] 2026-01-09 22:38:46,728 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:39:05] 2026-01-09 22:38:59,982 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:39:05] 2026-01-09 22:39:00,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759216305984)>', '<ExcThread(monitor, started 139758864934656)>']
[2026-01-09 23:39:05] 2026-01-09 22:39:00,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:39:05] 2026-01-09 22:39:00,802 | INFO     | [monitor] control thread has ended
[2026-01-09 23:39:05] 2026-01-09 22:39:05,381 | INFO     | all workflow threads have been joined
[2026-01-09 23:39:05] 2026-01-09 22:39:05,382 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:39:05] 2026-01-09 22:39:05,382 | INFO     | traces error code: 0
[2026-01-09 23:39:05] 2026-01-09 22:39:05,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:39:05] 2026-01-09 22:39:05,426 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:39:05] 2026-01-09 22:39:05,428 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:39:05] 2026-01-09 22:39:05,430 [wrapper] pilotpid: 3785731
[2026-01-09 23:39:05] 2026-01-09 22:39:05,432 [wrapper] Pilot exit status: 0
[2026-01-09 23:39:05] 2026-01-09 22:39:05,437 [wrapper] pandaids: 6963194342
[2026-01-09 23:39:05] 2026-01-09 22:39:05,450 [wrapper] cleanup supervisor_pilot 3810926 3785732
[2026-01-09 23:39:05] 2026-01-09 22:39:05,452 [wrapper] Test setup, not cleaning
[2026-01-09 23:39:05] 2026-01-09 22:39:05,454 [wrapper] apfmon messages muted
[2026-01-09 23:39:05] 2026-01-09 22:39:05,455 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:39:05] 2026-01-09 22:39:05,457 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:39:05]  *** Error codes and diagnostics ***
[2026-01-09 23:39:05]     "exeErrorCode": 0,
[2026-01-09 23:39:05]     "exeErrorDiag": "",
[2026-01-09 23:39:05]     "pilotErrorCode": 0,
[2026-01-09 23:39:05]     "pilotErrorDiag": "",
[2026-01-09 23:39:05]  *** Listing of results directory ***
[2026-01-09 23:39:05] total 441064
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 23:39:05] -rwx------ 1 boinc boinc     36322 Jan  9 05:26 runpilot2-wrapper.sh
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:39:05] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:50 run_atlas
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:50 job.xml
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc 222864274 Jan  9 20:50 EVNT.47898824._001515.pool.root.1
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc    592400 Jan  9 20:50 input.tar.gz
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:50 start_atlas.sh
[2026-01-09 23:39:05] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:50 shared
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:50 boinc_setup_complete
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc      6208 Jan  9 20:50 init_data.xml
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:50 boinc_lockfile
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc      2520 Jan  9 20:50 pandaJob.out
[2026-01-09 23:39:05] -rw------- 1 boinc boinc    989364 Jan  9 20:50 agis_schedconf.cvmfs.json
[2026-01-09 23:39:05] -rw------- 1 boinc boinc   1516240 Jan  9 20:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:39:05] drwx------ 5 boinc boinc      4096 Jan  9 20:50 pilot3
[2026-01-09 23:39:05] -rw------- 1 boinc boinc 221403245 Jan  9 23:37 HITS.47898826._039405.pool.root.1
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc       530 Jan  9 23:37 boinc_task_state.xml
[2026-01-09 23:39:05] -rw------- 1 boinc boinc      1016 Jan  9 23:38 memory_monitor_summary.json
[2026-01-09 23:39:05] -rw------- 1 boinc boinc    304667 Jan  9 23:38 log.47898826._039405.job.log.tgz.1
[2026-01-09 23:39:05] -rw------- 1 boinc boinc      7760 Jan  9 23:38 heartbeat.json
[2026-01-09 23:39:05] -rw------- 1 boinc boinc        95 Jan  9 23:38 pilot_heartbeat.json
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc      8192 Jan  9 23:38 boinc_mmap_file
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc        28 Jan  9 23:38 wrapper_checkpoint.txt
[2026-01-09 23:39:05] -rw------- 1 boinc boinc      4824 Jan  9 23:39 pilotlog.txt
[2026-01-09 23:39:05] -rw------- 1 boinc boinc   1433909 Jan  9 23:39 log.47898826._039405.job.log.1
[2026-01-09 23:39:05] -rw------- 1 boinc boinc       357 Jan  9 23:39 output.list
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc       620 Jan  9 23:39 runtime_log
[2026-01-09 23:39:05] -rw------- 1 boinc boinc   1761280 Jan  9 23:39 result.tar.gz
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc      8918 Jan  9 23:39 runtime_log.err
[2026-01-09 23:39:05] -rw------- 1 boinc boinc       665 Jan  9 23:39 gF8NDmlFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9PmKDmaMvHTo.diag
[2026-01-09 23:39:05] -rw-r--r-- 1 boinc boinc     10068 Jan  9 23:39 stderr.txt
[2026-01-09 23:39:05] HITS file was successfully produced:
[2026-01-09 23:39:05] -rw------- 1 boinc boinc 221403245 Jan  9 23:37 shared/HITS.pool.root.1
[2026-01-09 23:39:05]  *** Contents of shared directory: ***
[2026-01-09 23:39:05] total 436180
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc 222864274 Jan  9 20:50 ATLAS.root_0
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc    592400 Jan  9 20:50 input.tar.gz
[2026-01-09 23:39:05] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:50 start_atlas.sh
[2026-01-09 23:39:05] -rw------- 1 boinc boinc 221403245 Jan  9 23:37 HITS.pool.root.1
[2026-01-09 23:39:05] -rw------- 1 boinc boinc   1761280 Jan  9 23:39 result.tar.gz
23:39:06 (3782026): run_atlas exited; CPU time 19701.362873
23:39:06 (3782026): called boinc_finish(0)

</stderr_txt>
]]>

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