Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:38 (1200): wrapper (7.7.26015): starting
07:04:38 (1200): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 07:04:38] Arguments: --nthreads 12
[2026-01-09 07:04:38] Threads: 12
[2026-01-09 07:04:38] Checking for CVMFS
[2026-01-09 07:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:04:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:04:38] 2.11.2.0 723 180965 94780 154942 3 59 16169440 20275200 1 130560 0 70396930 99.901 10367457 36047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 07:04:38] CVMFS is ok
[2026-01-09 07:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:04:38] Further information can be found at the LHC@home message board.
[2026-01-09 07:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:04:38] Checking for apptainer binary...
[2026-01-09 07:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:04:38] Running /usr/bin/apptainer --version
[2026-01-09 07:04:39] apptainer version 1.3.2-1.el7
[2026-01-09 07:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:04:40] c-205-1.aglt2.org
[2026-01-09 07:04:40] apptainer works
[2026-01-09 07:04:40] Set ATHENA_PROC_NUMBER=12
[2026-01-09 07:04:40] Set ATHENA_CORE_NUMBER=12
[2026-01-09 07:04:40] Starting ATLAS job with PandaID=6963193782
[2026-01-09 07:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:47:10]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:47:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 08:47:10]  replicas=None
[2026-01-09 08:47:10]  scope=mc23_13p6TeV
[2026-01-09 08:47:10]  status=None
[2026-01-09 08:47:10]  status_code=0
[2026-01-09 08:47:10]  storage_token=
[2026-01-09 08:47:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963193782/log.47898826._039255.job.log.tgz.1
[2026-01-09 08:47:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/29/log.47898826._039255.job.log.tgz.1
[2026-01-09 08:47:10]  workdir=None
[2026-01-09 08:47:10] ]
[2026-01-09 08:47:10] 2026-01-09 13:45:57,156 | INFO     | transferring file log.47898826._039255.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963193782/log.47898826._039255.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 08:47:10] 2026-01-09 13:45:57,156 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963193782/log.47898826._039255.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._039255.job
[2026-01-09 08:47:10] 2026-01-09 13:45:57,178 | INFO     | adding to output.list: log.47898826._039255.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/29/log.47898826._039255.job.log.tg
[2026-01-09 08:47:10] 2026-01-09 13:45:57,179 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 08:47:10] 2026-01-09 13:45:57,179 | INFO     | summary of transferred files:
[2026-01-09 08:47:10] 2026-01-09 13:45:57,179 | INFO     |  -- lfn=log.47898826._039255.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 08:47:10] 2026-01-09 13:45:57,180 | INFO     | stage-out finished correctly
[2026-01-09 08:47:10] 2026-01-09 13:45:57,770 | INFO     | monitor loop #448: job 0:6963193782 is in state 'finished'
[2026-01-09 08:47:10] 2026-01-09 13:45:57,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:47:10] 2026-01-09 13:45:58,265 | INFO     | time since job start (6063s) is within the limit (349056.0s)
[2026-01-09 08:47:10] 2026-01-09 13:45:59,057 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 08:47:10] 2026-01-09 13:45:59,136 | INFO     | job 6963193782 has state=finished
[2026-01-09 08:47:10] 2026-01-09 13:45:59,137 | INFO     | preparing for final server update for job 6963193782 in state='finished'
[2026-01-09 08:47:10] 2026-01-09 13:45:59,137 | INFO     | this job has now completed (state=finished)
[2026-01-09 08:47:10] 2026-01-09 13:45:59,138 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 08:47:10] 2026-01-09 13:45:59,138 | INFO     | log transfer has been attempted: DONE
[2026-01-09 08:47:10] 2026-01-09 13:45:59,138 | INFO     | job 6963193782 has finished - writing final server update
[2026-01-09 08:47:10] 2026-01-09 13:45:59,138 | INFO     | total number of processed events: 400 (read)
[2026-01-09 08:47:10] 2026-01-09 13:45:59,139 | INFO     | executing command: lscpu
[2026-01-09 08:47:10] 2026-01-09 13:45:59,165 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 08:47:10] 2026-01-09 13:46:00,270 | INFO     | time since job start (6065s) is within the limit (349056.0s)
[2026-01-09 08:47:10] 2026-01-09 13:46:00,273 | INFO     | monitor loop #449: job 0:6963193782 is in state 'finished'
[2026-01-09 08:47:10] 2026-01-09 13:46:00,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:47:10] 2026-01-09 13:46:01,390 | INFO     | PID=5059 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 08:47:10] 2026-01-09 13:46:02,402 | INFO     | time since job start (6067s) is within the limit (349056.0s)
[2026-01-09 08:47:10] 2026-01-09 13:46:02,776 | INFO     | monitor loop #450: job 0:6963193782 is in state 'finished'
[2026-01-09 08:47:10] 2026-01-09 13:46:02,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:47:10] 2026-01-09 13:46:04,406 | INFO     | time since job start (6069s) is within the limit (349056.0s)
[2026-01-09 08:47:10] 2026-01-09 13:46:04,982 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 08:47:10] 2026-01-09 13:46:04,986 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-09 08:47:10] 2026-01-09 13:46:04,988 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963193782/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:47:10] 2026-01-09 13:46:04,988 | INFO     | extracted standard info from prmon json
[2026-01-09 08:47:10] 2026-01-09 13:46:04,989 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:47:10] 2026-01-09 13:46:04,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:47:10] 2026-01-09 13:46:04,989 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:47:10] 2026-01-09 13:46:04,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:47:10] 2026-01-09 13:46:04,991 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:47:10] 2026-01-09 13:46:04,991 | INFO     | sum of square deviations: 241429643.0
[2026-01-09 08:47:10] 2026-01-09 13:46:04,991 | INFO     | sum of deviations: -13290690644.5
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | mean x: 1767963404.5
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | mean y: 2757680.097826087
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | intersect: 97329061062.01733
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | chi2: 0.10578620835560891
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | current memory leak: -55.05 B/s (using 92 data points, chi2=0.11)
[2026-01-09 08:47:10] 2026-01-09 13:46:04,992 | INFO     | could have reported an average CPU frequency of 2133 MHz (7 samples)
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | ..............................
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . Timing measurements:
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . get job = 0 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . initial setup = 2 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . payload setup = 7 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . stage-in = 0 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . payload execution = 6033 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,993 | INFO     | . stage-out = 0 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,994 | INFO     | . log creation = 0 s
[2026-01-09 08:47:10] 2026-01-09 13:46:04,994 | INFO     | ..............................
[2026-01-09 08:47:10] 2026-01-09 13:46:05,073 | INFO     | 
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | job summary report
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | --------------------------------------------------
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | PanDA job id: 6963193782
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | task id: 47898826
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | errors: (none)
[2026-01-09 08:47:10] 2026-01-09 13:46:05,074 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | pilot state: finished 
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | transexitcode: 0
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | exeerrorcode: 0
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | exeerrordiag: 
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | exitcode: 0
[2026-01-09 08:47:10] 2026-01-09 13:46:05,075 | INFO     | exitmsg: OK
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | cpuconsumptiontime: 64987 s
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | nevents: 400
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | neventsw: 0
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | pid: 12778
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | pgrp: 12778
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | corecount: 12
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | event service: False
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 6044: 2311040, 6045: 2320038, 6047: 2320094, 6053: 2320416}
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | --------------------------------------------------
[2026-01-09 08:47:10] 2026-01-09 13:46:05,076 | INFO     | 
[2026-01-09 08:47:10] 2026-01-09 13:46:05,077 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 08:47:10] 2026-01-09 13:46:05,121 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,122 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,124 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:47:10] 2026-01-09 13:46:05,125 | INFO     | job 6963193782 has completed (purged errors)
[2026-01-09 08:47:10] 2026-01-09 13:46:05,125 | INFO     | overall cleanup function is called
[2026-01-09 08:47:10] 2026-01-09 13:46:06,143 | INFO     | --- collectZombieJob: --- 10, [12778]
[2026-01-09 08:47:10] 2026-01-09 13:46:06,143 | INFO     | zombie collector waiting for pid 12778
[2026-01-09 08:47:10] 2026-01-09 13:46:06,143 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:47:10] 2026-01-09 13:46:06,143 | INFO     | collected zombie processes
[2026-01-09 08:47:10] 2026-01-09 13:46:06,143 | INFO     | will attempt to kill all subprocesses of pid=12778
[2026-01-09 08:47:10] 2026-01-09 13:46:06,233 | INFO     | process IDs to be killed: [12778] (in reverse order)
[2026-01-09 08:47:10] 2026-01-09 13:46:06,324 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:47:10] 2026-01-09 13:46:06,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:47:10] 2026-01-09 13:46:06,327 | INFO     | did not find any defunct processes belonging to 12778
[2026-01-09 08:47:10] 2026-01-09 13:46:06,329 | INFO     | did not find any defunct processes belonging to 12778
[2026-01-09 08:47:10] 2026-01-09 13:46:06,330 | INFO     | ready for new job
[2026-01-09 08:47:10] 2026-01-09 13:46:06,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:47:10] 2026-01-09 13:46:06,331 | INFO     | ***************************************
[2026-01-09 08:47:10] 2026-01-09 13:46:06,331 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:47:10] 2026-01-09 13:46:06,331 | INFO     | ***************************************
[2026-01-09 08:47:10] 2026-01-09 13:46:06,331 | INFO     | 
[2026-01-09 08:47:10] 2026-01-09 13:46:06,332 | INFO     | architecture information:
[2026-01-09 08:47:10] 2026-01-09 13:46:06,332 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:47:10] 2026-01-09 13:46:06,346 | INFO     | cat /etc/os-release:
[2026-01-09 08:47:10] NAME="CentOS Linux"
[2026-01-09 08:47:10] VERSION="7 (Core)"
[2026-01-09 08:47:10] ID="centos"
[2026-01-09 08:47:10] ID_LIKE="rhel fedora"
[2026-01-09 08:47:10] VERSION_ID="7"
[2026-01-09 08:47:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:47:10] ANSI_COLOR="0;31"
[2026-01-09 08:47:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:47:10] HOME_URL="https://www.centos.org/"
[2026-01-09 08:47:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:47:10] 
[2026-01-09 08:47:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:47:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:47:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:47:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:47:10] 
[2026-01-09 08:47:10] 2026-01-09 13:46:06,347 | INFO     | ***************************************
[2026-01-09 08:47:10] 2026-01-09 13:46:06,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 08:47:10] 2026-01-09 13:46:06,866 | INFO     | sufficient remaining disk space (29432479744 B)
[2026-01-09 08:47:10] 2026-01-09 13:46:06,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:47:10] 2026-01-09 13:46:06,867 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:47:10] 2026-01-09 13:46:06,867 | INFO     | update_server=False
[2026-01-09 08:47:10] 2026-01-09 13:46:06,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:47:10] 2026-01-09 13:46:06,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:47:10] 2026-01-09 13:46:06,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:47:10] 2026-01-09 13:46:06,868 | INFO     | aborting loop
[2026-01-09 08:47:10] 2026-01-09 13:46:07,669 | INFO     | all data control threads have been joined
[2026-01-09 08:47:10] 2026-01-09 13:46:07,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:47:10] 2026-01-09 13:46:07,873 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:07,873 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:07,873 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,045 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,200 | INFO     | all payload control threads have been joined
[2026-01-09 08:47:10] 2026-01-09 13:46:08,262 | INFO     | all job control threads have been joined
[2026-01-09 08:47:10] 2026-01-09 13:46:08,422 | INFO     | [job] validate thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,619 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,674 | INFO     | [data] control thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,729 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,760 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:08,887 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:09,205 | INFO     | [payload] control thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:09,268 | INFO     | [job] control thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:09,347 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:09,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:47:10] 2026-01-09 13:46:09,781 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:13,651 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:17,180 | INFO     | job.realtimelogging is not enabled
[2026-01-09 08:47:10] 2026-01-09 13:46:18,185 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:47:10] 2026-01-09 13:46:37,600 | INFO     | PID=5059 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 08:47:10] 2026-01-09 13:46:37,601 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:47:10] 2026-01-09 13:46:37,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:47:10] 2026-01-09 13:46:37,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:47:10] 2026-01-09 13:47:04,767 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:47:10] 2026-01-09 13:47:05,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223287207744)>', '<ExcThread(monitor, started 140222629148416)>']
[2026-01-09 08:47:10] 2026-01-09 13:47:05,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:47:10] 2026-01-09 13:47:05,719 | INFO     | [monitor] control thread has ended
[2026-01-09 08:47:10] 2026-01-09 13:47:10,133 | INFO     | all workflow threads have been joined
[2026-01-09 08:47:10] 2026-01-09 13:47:10,139 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:47:10] 2026-01-09 13:47:10,140 | INFO     | traces error code: 0
[2026-01-09 08:47:10] 2026-01-09 13:47:10,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:47:10] 2026-01-09 13:47:10,246 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:47:10] 2026-01-09 13:47:10,250 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:47:10] 2026-01-09 13:47:10,254 [wrapper] pilotpid: 5059
[2026-01-09 08:47:10] 2026-01-09 13:47:10,258 [wrapper] Pilot exit status: 0
[2026-01-09 08:47:10] 2026-01-09 13:47:10,273 [wrapper] pandaids: 6963193782
[2026-01-09 08:47:10] 2026-01-09 13:47:10,324 [wrapper] cleanup supervisor_pilot 19750 5060
[2026-01-09 08:47:10] 2026-01-09 13:47:10,327 [wrapper] Test setup, not cleaning
[2026-01-09 08:47:10] 2026-01-09 13:47:10,331 [wrapper] apfmon messages muted
[2026-01-09 08:47:10] 2026-01-09 13:47:10,335 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:47:10] 2026-01-09 13:47:10,339 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:47:10]  *** Error codes and diagnostics ***
[2026-01-09 08:47:10]     "exeErrorCode": 0,
[2026-01-09 08:47:10]     "exeErrorDiag": "",
[2026-01-09 08:47:10]     "pilotErrorCode": 0,
[2026-01-09 08:47:10]     "pilotErrorDiag": "",
[2026-01-09 08:47:10]  *** Listing of results directory ***
[2026-01-09 08:47:10] total 440888
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 08:47:10] -rwx------ 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas       100 Jan  9 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:47:10] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 07:04 run_atlas
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas       105 Jan  9 07:04 job.xml
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas 226552354 Jan  9 07:04 EVNT.47898824._001509.pool.root.1
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:04 start_atlas.sh
[2026-01-09 08:47:10] drwxrwx--x 2 boincer umatlas      4096 Jan  9 07:04 shared
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas    592401 Jan  9 07:04 input.tar.gz
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas         0 Jan  9 07:04 boinc_lockfile
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 07:04 pandaJob.out
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas        57 Jan  9 07:04 setup.sh.local
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas    989377 Jan  9 07:04 agis_schedconf.cvmfs.json
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas   1516240 Jan  9 07:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:47:10] drwx------ 5 boincer umatlas      4096 Jan  9 07:04 pilot3
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 08:38 init_data.xml
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas 218478281 Jan  9 08:45 HITS.47898826._039255.pool.root.1
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas       529 Jan  9 08:45 boinc_task_state.xml
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas      1046 Jan  9 08:45 memory_monitor_summary.json
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas    399190 Jan  9 08:45 log.47898826._039255.job.log.tgz.1
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas      7850 Jan  9 08:46 heartbeat.json
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas        95 Jan  9 08:46 pilot_heartbeat.json
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 08:46 boinc_mmap_file
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas        27 Jan  9 08:46 wrapper_checkpoint.txt
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas      4817 Jan  9 08:47 pilotlog.txt
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas    861816 Jan  9 08:47 log.47898826._039255.job.log.1
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas       357 Jan  9 08:47 output.list
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas       620 Jan  9 08:47 runtime_log
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas   1280000 Jan  9 08:47 result.tar.gz
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas      9339 Jan  9 08:47 runtime_log.err
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas       658 Jan  9 08:47 GmVMDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaOmKDm6CZlxn.diag
[2026-01-09 08:47:10] -rw-r--r-- 1 boincer umatlas     22000 Jan  9 08:47 stderr.txt
[2026-01-09 08:47:10] HITS file was successfully produced:
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas 218478281 Jan  9 08:45 shared/HITS.pool.root.1
[2026-01-09 08:47:10]  *** Contents of shared directory: ***
[2026-01-09 08:47:10] total 436456
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas 226552354 Jan  9 07:04 ATLAS.root_0
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 07:04 start_atlas.sh
[2026-01-09 08:47:10] -rw-r--r-- 2 boincer umatlas    592401 Jan  9 07:04 input.tar.gz
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas 218478281 Jan  9 08:45 HITS.pool.root.1
[2026-01-09 08:47:10] -rw------- 1 boincer umatlas   1280000 Jan  9 08:47 result.tar.gz
08:47:11 (1200): run_atlas exited; CPU time 64967.623234
08:47:11 (1200): called boinc_finish(0)

</stderr_txt>
]]>

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