Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:01:05 (1375948): wrapper (7.7.26015): starting
07:01:05 (1375948): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:01:05] Arguments: --nthreads 8
[2026-01-09 07:01:05] Threads: 8
[2026-01-09 07:01:05] Checking for CVMFS
[2026-01-09 07:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:01:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:01:07] 2.13.3.0 7345 22853 178940 154942 0 429 39001122 40960000 21147 16776704 0 39441647 99.775 21857474 44063 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 07:01:07] CVMFS is ok
[2026-01-09 07:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:01:07] Further information can be found at the LHC@home message board.
[2026-01-09 07:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:01:07] Checking for apptainer binary...
[2026-01-09 07:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:01:07] Running /usr/bin/apptainer --version
[2026-01-09 07:01:07] apptainer version 1.4.5-2.el9
[2026-01-09 07:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:01:07] c-212-14.aglt2.org
[2026-01-09 07:01:07] apptainer works
[2026-01-09 07:01:07] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:01:07] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:01:07] Starting ATLAS job with PandaID=6963188917
[2026-01-09 07:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:59:07]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:59:07] 2026-01-09 16:58:14,395 | INFO     | time since job start (17805s) is within the limit (349056.0s)
[2026-01-09 11:59:07] 2026-01-09 16:58:16,199 | INFO     | monitor loop #1205: job 0:6963188917 is in state 'finished'
[2026-01-09 11:59:07] 2026-01-09 16:58:16,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:59:07] 2026-01-09 16:58:16,403 | INFO     | time since job start (17807s) is within the limit (349056.0s)
[2026-01-09 11:59:07] 2026-01-09 16:58:18,409 | INFO     | time since job start (17809s) is within the limit (349056.0s)
[2026-01-09 11:59:07] 2026-01-09 16:58:18,410 | INFO     | 17811s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 11:59:07] 2026-01-09 16:58:18,702 | INFO     | monitor loop #1206: job 0:6963188917 is in state 'finished'
[2026-01-09 11:59:07] 2026-01-09 16:58:18,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,008 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 11:59:07] 2026-01-09 16:58:19,014 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3157.81153125
[2026-01-09 11:59:07] 2026-01-09 16:58:19,028 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963188917/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,029 | INFO     | extracted standard info from prmon json
[2026-01-09 11:59:07] 2026-01-09 16:58:19,029 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:59:07] 2026-01-09 16:58:19,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:59:07] 2026-01-09 16:58:19,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:59:07] 2026-01-09 16:58:19,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:59:07] 2026-01-09 16:58:19,034 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:59:07] 2026-01-09 16:58:19,034 | INFO     | sum of square deviations: 7640981874.164936
[2026-01-09 11:59:07] 2026-01-09 16:58:19,036 | INFO     | sum of deviations: 18850335820.309277
[2026-01-09 11:59:07] 2026-01-09 16:58:19,036 | INFO     | mean x: 1767968993.3092782
[2026-01-09 11:59:07] 2026-01-09 16:58:19,036 | INFO     | mean y: 2511697.996563574
[2026-01-09 11:59:07] 2026-01-09 16:58:19,036 | INFO     | intersect: -4359075568.2232275
[2026-01-09 11:59:07] 2026-01-09 16:58:19,036 | INFO     | chi2: 1.451717016019128
[2026-01-09 11:59:07] 2026-01-09 16:58:19,037 | INFO     | sum of square deviations: 7253779144.237757
[2026-01-09 11:59:07] 2026-01-09 16:58:19,038 | INFO     | sum of deviations: 18267136901.251728
[2026-01-09 11:59:07] 2026-01-09 16:58:19,038 | INFO     | mean x: 1767968840.7972028
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | mean y: 2511468.314685315
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | intersect: -4449751029.592333
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | chi2: 1.4519923992149655
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | current chi2=1.4519923992149655 (change=-0.01896948184796246 %)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | right removable region: 285
[2026-01-09 11:59:07] 2026-01-09 16:58:19,039 | INFO     | sum of square deviations: 7253812281.178306
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | sum of deviations: -22132165779.849686
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | mean x: 1767969145.8146853
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | mean y: 2527703.0594405592
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | intersect: 5396792775.283472
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | chi2: 0.10872332896136754
[2026-01-09 11:59:07] 2026-01-09 16:58:19,042 | INFO     | current chi2=0.10872332896136754 (change=92.51070781966125 %)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,043 | INFO     | sum of square deviations: 6879945263.17442
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | sum of deviations: -22830893402.334488
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | mean x: 1767969298.3202846
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | mean y: 2527967.181494662
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | intersect: 5869481415.867269
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | chi2: 0.09345022442517996
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | current chi2=0.09345022442517996 (change=14.047679262667298 %)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,045 | INFO     | left removable region: 20
[2026-01-09 11:59:07] 2026-01-09 16:58:19,046 | INFO     | sum of square deviations: 5770190289.849037
[2026-01-09 11:59:07] 2026-01-09 16:58:19,047 | INFO     | sum of deviations: -12798581124.698103
[2026-01-09 11:59:07] 2026-01-09 16:58:19,047 | INFO     | mean x: 1767969420.3018868
[2026-01-09 11:59:07] 2026-01-09 16:58:19,048 | INFO     | mean y: 2523600.596226415
[2026-01-09 11:59:07] 2026-01-09 16:58:19,048 | INFO     | intersect: 3923971406.4901924
[2026-01-09 11:59:07] 2026-01-09 16:58:19,048 | INFO     | chi2: 0.07907072931625546
[2026-01-09 11:59:07] 2026-01-09 16:58:19,048 | INFO     | current memory leak: -2.22 B/s (using 265 data points, chi2=0.08)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | could have reported an average CPU frequency of 3144 MHz (13 samples)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | ..............................
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . Timing measurements:
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . get job = 0 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . initial setup = 2 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . payload setup = 15 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . stage-in = 0 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . payload execution = 17748 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . stage-out = 1 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | . log creation = 0 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,049 | INFO     | ..............................
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | 
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | job summary report
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | --------------------------------------------------
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | PanDA job id: 6963188917
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | task id: 47898826
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | errors: (none)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | pilot state: finished 
[2026-01-09 11:59:07] 2026-01-09 16:58:19,127 | INFO     | transexitcode: 0
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | exeerrorcode: 0
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | exeerrordiag: 
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | exitcode: 0
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | exitmsg: OK
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | cpuconsumptiontime: 45339 s
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | nevents: 400
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | neventsw: 0
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | pid: 1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | pgrp: 1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | corecount: 8
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | event service: False
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | sizes: {0: 2283800, 1: 2283999, 11: 2283999, 12: 2284289, 22: 2284317, 17767: 2316421, 17768: 2316548, 17770: 2325658, 17777: 2325796}
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | --------------------------------------------------
[2026-01-09 11:59:07] 2026-01-09 16:58:19,128 | INFO     | 
[2026-01-09 11:59:07] 2026-01-09 16:58:19,129 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 11:59:07] 2026-01-09 16:58:19,172 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,172 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,172 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,172 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,173 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:59:07] 2026-01-09 16:58:19,174 | INFO     | job 6963188917 has completed (purged errors)
[2026-01-09 11:59:07] 2026-01-09 16:58:19,174 | INFO     | overall cleanup function is called
[2026-01-09 11:59:07] 2026-01-09 16:58:20,182 | INFO     | --- collectZombieJob: --- 10, [1386523]
[2026-01-09 11:59:07] 2026-01-09 16:58:20,183 | INFO     | zombie collector waiting for pid 1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:20,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:59:07] 2026-01-09 16:58:20,183 | INFO     | collected zombie processes
[2026-01-09 11:59:07] 2026-01-09 16:58:20,183 | INFO     | will attempt to kill all subprocesses of pid=1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:20,628 | INFO     | process IDs to be killed: [1386523] (in reverse order)
[2026-01-09 11:59:07] 2026-01-09 16:58:20,795 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:59:07] 2026-01-09 16:58:20,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:59:07] 2026-01-09 16:58:20,811 | INFO     | did not find any defunct processes belonging to 1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:20,827 | INFO     | did not find any defunct processes belonging to 1386523
[2026-01-09 11:59:07] 2026-01-09 16:58:20,828 | INFO     | ready for new job
[2026-01-09 11:59:07] 2026-01-09 16:58:20,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:59:07] 2026-01-09 16:58:20,830 | INFO     | ***************************************
[2026-01-09 11:59:07] 2026-01-09 16:58:20,830 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:59:07] 2026-01-09 16:58:20,831 | INFO     | ***************************************
[2026-01-09 11:59:07] 2026-01-09 16:58:20,831 | INFO     | 
[2026-01-09 11:59:07] 2026-01-09 16:58:20,836 | INFO     | architecture information:
[2026-01-09 11:59:07] 2026-01-09 16:58:20,837 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:59:07] 2026-01-09 16:58:20,868 | INFO     | cat /etc/os-release:
[2026-01-09 11:59:07] NAME="CentOS Linux"
[2026-01-09 11:59:07] VERSION="7 (Core)"
[2026-01-09 11:59:07] ID="centos"
[2026-01-09 11:59:07] ID_LIKE="rhel fedora"
[2026-01-09 11:59:07] VERSION_ID="7"
[2026-01-09 11:59:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:59:07] ANSI_COLOR="0;31"
[2026-01-09 11:59:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:59:07] HOME_URL="https://www.centos.org/"
[2026-01-09 11:59:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:59:07] 
[2026-01-09 11:59:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:59:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:59:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:59:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:59:07] 
[2026-01-09 11:59:07] 2026-01-09 16:58:20,868 | INFO     | ***************************************
[2026-01-09 11:59:07] 2026-01-09 16:58:21,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 11:59:07] 2026-01-09 16:58:21,401 | INFO     | sufficient remaining disk space (127495307264 B)
[2026-01-09 11:59:07] 2026-01-09 16:58:21,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:59:07] 2026-01-09 16:58:21,401 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:59:07] 2026-01-09 16:58:21,401 | INFO     | update_server=False
[2026-01-09 11:59:07] 2026-01-09 16:58:21,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:59:07] 2026-01-09 16:58:21,588 | INFO     | all data control threads have been joined
[2026-01-09 11:59:07] 2026-01-09 16:58:22,028 | INFO     | all payload control threads have been joined
[2026-01-09 11:59:07] 2026-01-09 16:58:22,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:59:07] 2026-01-09 16:58:22,214 | INFO     | aborting loop
[2026-01-09 11:59:07] 2026-01-09 16:58:22,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:59:07] 2026-01-09 16:58:22,408 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:22,598 | INFO     | [data] control thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:22,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:59:07] 2026-01-09 16:58:22,691 | INFO     | all job control threads have been joined
[2026-01-09 11:59:07] 2026-01-09 16:58:23,036 | INFO     | [payload] control thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,197 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,219 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,247 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,276 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,383 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,636 | INFO     | [job] validate thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,697 | INFO     | [job] control thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,718 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:23,877 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:24,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:59:07] 2026-01-09 16:58:24,365 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:25,146 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:26,676 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:31,760 | INFO     | job.realtimelogging is not enabled
[2026-01-09 11:59:07] 2026-01-09 16:58:32,766 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:59:07] 2026-01-09 16:58:51,978 | INFO     | PID=1379645 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 11:59:07] 2026-01-09 16:58:51,980 | INFO     | .. there are 17 such processes running
[2026-01-09 11:59:07] 2026-01-09 16:58:51,981 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:59:07] 2026-01-09 16:58:51,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:59:07] 2026-01-09 16:58:51,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:59:07] 2026-01-09 16:59:00,631 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:59:07] 2026-01-09 16:59:01,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108408969024)>', '<ExcThread(monitor, started 140107872990976)>']
[2026-01-09 11:59:07] 2026-01-09 16:59:02,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:59:07] 2026-01-09 16:59:02,042 | INFO     | [monitor] control thread has ended
[2026-01-09 11:59:07] 2026-01-09 16:59:06,817 | INFO     | all workflow threads have been joined
[2026-01-09 11:59:07] 2026-01-09 16:59:06,818 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:59:07] 2026-01-09 16:59:06,818 | INFO     | traces error code: 0
[2026-01-09 11:59:07] 2026-01-09 16:59:06,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:59:07] 2026-01-09 16:59:06,940 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:59:07] 2026-01-09 16:59:06,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:59:07] 2026-01-09 16:59:06,949 [wrapper] pilotpid: 1379645
[2026-01-09 11:59:07] 2026-01-09 16:59:06,952 [wrapper] Pilot exit status: 0
[2026-01-09 11:59:07] 2026-01-09 16:59:06,963 [wrapper] pandaids: 6963188917
[2026-01-09 11:59:07] 2026-01-09 16:59:07,050 [wrapper] cleanup supervisor_pilot 2068822 1379646
[2026-01-09 11:59:07] 2026-01-09 16:59:07,055 [wrapper] Test setup, not cleaning
[2026-01-09 11:59:07] 2026-01-09 16:59:07,057 [wrapper] apfmon messages muted
[2026-01-09 11:59:07] 2026-01-09 16:59:07,060 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:59:07] 2026-01-09 16:59:07,062 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:59:07]  *** Error codes and diagnostics ***
[2026-01-09 11:59:07]     "exeErrorCode": 0,
[2026-01-09 11:59:07]     "exeErrorDiag": "",
[2026-01-09 11:59:07]     "pilotErrorCode": 0,
[2026-01-09 11:59:07]     "pilotErrorDiag": "",
[2026-01-09 11:59:07]  *** Listing of results directory ***
[2026-01-09 11:59:07] total 446052
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 11:59:07] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas       100 Jan  9 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:59:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 07:01 run_atlas
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas       105 Jan  9 07:01 job.xml
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas 225271768 Jan  9 07:01 EVNT.47898824._001453.pool.root.1
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:01 start_atlas.sh
[2026-01-09 11:59:07] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 07:01 shared
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 07:01 input.tar.gz
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas         0 Jan  9 07:01 boinc_lockfile
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 07:01 pandaJob.out
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas        57 Jan  9 07:01 setup.sh.local
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas    989377 Jan  9 07:01 agis_schedconf.cvmfs.json
[2026-01-09 11:59:07] drwx------. 5 boincer umatlas      4096 Jan  9 07:01 pilot3
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas 221809846 Jan  9 11:57 HITS.47898826._037854.pool.root.1
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas       530 Jan  9 11:57 boinc_task_state.xml
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas      1036 Jan  9 11:58 memory_monitor_summary.json
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas   1516240 Jan  9 11:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas      6957 Jan  9 11:58 init_data.xml
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas    500588 Jan  9 11:58 log.47898826._037854.job.log.tgz.1
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas      7775 Jan  9 11:58 heartbeat.json
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas        95 Jan  9 11:58 pilot_heartbeat.json
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas        28 Jan  9 11:59 wrapper_checkpoint.txt
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 11:59 boinc_mmap_file
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas      4897 Jan  9 11:59 pilotlog.txt
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas   2380371 Jan  9 11:59 log.47898826._037854.job.log.1
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas       357 Jan  9 11:59 output.list
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas       620 Jan  9 11:59 runtime_log
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas   2897920 Jan  9 11:59 result.tar.gz
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 11:59 runtime_log.err
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas       657 Jan  9 11:59 AFeLDmLFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN9gKDmSdmnQm.diag
[2026-01-09 11:59:07] -rw-r--r--. 1 boincer umatlas     21407 Jan  9 11:59 stderr.txt
[2026-01-09 11:59:07] HITS file was successfully produced:
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas 221809846 Jan  9 11:57 shared/HITS.pool.root.1
[2026-01-09 11:59:07]  *** Contents of shared directory: ***
[2026-01-09 11:59:07] total 440036
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas 225271768 Jan  9 07:01 ATLAS.root_0
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:01 start_atlas.sh
[2026-01-09 11:59:07] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 07:01 input.tar.gz
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas 221809846 Jan  9 11:57 HITS.pool.root.1
[2026-01-09 11:59:07] -rw-------. 1 boincer umatlas   2897920 Jan  9 11:59 result.tar.gz
11:59:09 (1375948): run_atlas exited; CPU time 45851.802425
11:59:09 (1375948): called boinc_finish(0)

</stderr_txt>
]]>

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