Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:49:39 (1676669): wrapper (7.7.26015): starting
06:49:39 (1676669): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 06:49:39] Arguments: --nthreads 9
[2026-01-09 06:49:39] Threads: 9
[2026-01-09 06:49:39] Checking for CVMFS
[2026-01-09 06:49:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:49:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:50:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:50:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:50:01] 2.13.3.0 15513 93319 717112 154942 3 382 34845959 40960001 44341 16776704 0 809667308 99.831 350334129 31530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 06:50:01] CVMFS is ok
[2026-01-09 06:50:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:50:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:50:01] Further information can be found at the LHC@home message board.
[2026-01-09 06:50:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:50:01] Checking for apptainer binary...
[2026-01-09 06:50:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:50:01] Running /usr/bin/apptainer --version
[2026-01-09 06:50:01] apptainer version 1.4.5-2.el9
[2026-01-09 06:50:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:50:02] c-1-1.aglt2.org
[2026-01-09 06:50:02] apptainer works
[2026-01-09 06:50:02] Set ATHENA_PROC_NUMBER=9
[2026-01-09 06:50:02] Set ATHENA_CORE_NUMBER=9
[2026-01-09 06:50:02] Starting ATLAS job with PandaID=6963188235
[2026-01-09 06:50:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:12:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:12:43] 2026-01-09 18:11:54,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:12:43] 2026-01-09 18:11:54,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:12:43] 2026-01-09 18:11:54,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:12:43] 2026-01-09 18:11:54,500 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:12:43] 2026-01-09 18:11:54,501 | INFO     | sum of square deviations: 16091713114.412909
[2026-01-09 13:12:43] 2026-01-09 18:11:54,510 | INFO     | sum of deviations: 76656978524.54683
[2026-01-09 13:12:43] 2026-01-09 18:11:54,511 | INFO     | mean x: 1767970899.3646111
[2026-01-09 13:12:43] 2026-01-09 18:11:54,511 | INFO     | mean y: 2554744.4959785524
[2026-01-09 13:12:43] 2026-01-09 18:11:54,511 | INFO     | intersect: -8419625436.135544
[2026-01-09 13:12:43] 2026-01-09 18:11:54,512 | INFO     | chi2: 1.771556618079908
[2026-01-09 13:12:43] 2026-01-09 18:11:54,512 | INFO     | sum of square deviations: 15453245572.47554
[2026-01-09 13:12:43] 2026-01-09 18:11:54,516 | INFO     | sum of deviations: 74559772778.17389
[2026-01-09 13:12:43] 2026-01-09 18:11:54,516 | INFO     | mean x: 1767970746.8668478
[2026-01-09 13:12:43] 2026-01-09 18:11:54,516 | INFO     | mean y: 2554243.3913043477
[2026-01-09 13:12:43] 2026-01-09 18:11:54,516 | INFO     | intersect: -8527660108.449457
[2026-01-09 13:12:43] 2026-01-09 18:11:54,517 | INFO     | chi2: 1.7719332946436852
[2026-01-09 13:12:43] 2026-01-09 18:11:54,517 | INFO     | current chi2=1.7719332946436852 (change=-0.0212624626237131 %)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,517 | INFO     | right removable region: 367
[2026-01-09 13:12:43] 2026-01-09 18:11:54,518 | INFO     | sum of square deviations: 15453185243.73916
[2026-01-09 13:12:43] 2026-01-09 18:11:54,522 | INFO     | sum of deviations: 7763281311.782608
[2026-01-09 13:12:43] 2026-01-09 18:11:54,522 | INFO     | mean x: 1767971051.8695652
[2026-01-09 13:12:43] 2026-01-09 18:11:54,522 | INFO     | mean y: 2571121.5788043477
[2026-01-09 13:12:43] 2026-01-09 18:11:54,522 | INFO     | intersect: -885611891.1960155
[2026-01-09 13:12:43] 2026-01-09 18:11:54,523 | INFO     | chi2: 0.13015573419161133
[2026-01-09 13:12:43] 2026-01-09 18:11:54,523 | INFO     | current chi2=0.13015573419161133 (change=92.65302994760168 %)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,524 | INFO     | sum of square deviations: 14831773973.046803
[2026-01-09 13:12:43] 2026-01-09 18:11:54,532 | INFO     | sum of deviations: -8007126207.865004
[2026-01-09 13:12:43] 2026-01-09 18:11:54,532 | INFO     | mean x: 1767971204.3746557
[2026-01-09 13:12:43] 2026-01-09 18:11:54,532 | INFO     | mean y: 2574992.0798898074
[2026-01-09 13:12:43] 2026-01-09 18:11:54,532 | INFO     | intersect: 957037256.0696708
[2026-01-09 13:12:43] 2026-01-09 18:11:54,533 | INFO     | chi2: 0.06855331044389042
[2026-01-09 13:12:43] 2026-01-09 18:11:54,533 | INFO     | current chi2=0.06855331044389042 (change=47.32978084317952 %)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,534 | INFO     | sum of square deviations: 14227291147.343622
[2026-01-09 13:12:43] 2026-01-09 18:11:54,540 | INFO     | sum of deviations: -13653567154.298887
[2026-01-09 13:12:43] 2026-01-09 18:11:54,541 | INFO     | mean x: 1767971356.8743017
[2026-01-09 13:12:43] 2026-01-09 18:11:54,541 | INFO     | mean y: 2576402.304469274
[2026-01-09 13:12:43] 2026-01-09 18:11:54,541 | INFO     | intersect: 1699253260.742642
[2026-01-09 13:12:43] 2026-01-09 18:11:54,542 | INFO     | chi2: 0.04280113476209693
[2026-01-09 13:12:43] 2026-01-09 18:11:54,542 | INFO     | current chi2=0.04280113476209693 (change=37.56518177611736 %)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,543 | INFO     | sum of square deviations: 13639438080.889584
[2026-01-09 13:12:43] 2026-01-09 18:11:54,548 | INFO     | sum of deviations: -10787964842.056673
[2026-01-09 13:12:43] 2026-01-09 18:11:54,548 | INFO     | mean x: 1767971509.3767705
[2026-01-09 13:12:43] 2026-01-09 18:11:54,548 | INFO     | mean y: 2575658.0906515582
[2026-01-09 13:12:43] 2026-01-09 18:11:54,549 | INFO     | intersect: 1400933447.597953
[2026-01-09 13:12:43] 2026-01-09 18:11:54,549 | INFO     | chi2: 0.041407951618632116
[2026-01-09 13:12:43] 2026-01-09 18:11:54,549 | INFO     | current chi2=0.041407951618632116 (change=3.255014501855138 %)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,550 | INFO     | left removable region: 40
[2026-01-09 13:12:43] 2026-01-09 18:11:54,550 | INFO     | sum of square deviations: 10842203894.483206
[2026-01-09 13:12:43] 2026-01-09 18:11:54,554 | INFO     | sum of deviations: 7597054513.293586
[2026-01-09 13:12:43] 2026-01-09 18:11:54,555 | INFO     | mean x: 1767971936.3730886
[2026-01-09 13:12:43] 2026-01-09 18:11:54,555 | INFO     | mean y: 2569735.669724771
[2026-01-09 13:12:43] 2026-01-09 18:11:54,555 | INFO     | intersect: -1236235521.021104
[2026-01-09 13:12:43] 2026-01-09 18:11:54,556 | INFO     | chi2: 0.014157008368452592
[2026-01-09 13:12:43] 2026-01-09 18:11:54,556 | INFO     | current memory leak: 0.70 B/s (using 327 data points, chi2=0.01)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,556 | INFO     | could have reported an average CPU frequency of 2957 MHz (16 samples)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | ..............................
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . Timing measurements:
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . get job = 0 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . initial setup = 3 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . payload setup = 27 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . stage-in = 0 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . payload execution = 22758 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . stage-out = 3 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,557 | INFO     | . log creation = 0 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,558 | INFO     | ..............................
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | 
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | job summary report
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | --------------------------------------------------
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | PanDA job id: 6963188235
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | task id: 47898826
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | errors: (none)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | pilot state: finished 
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | transexitcode: 0
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | exeerrorcode: 0
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | exeerrordiag: 
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | exitcode: 0
[2026-01-09 13:12:43] 2026-01-09 18:11:54,721 | INFO     | exitmsg: OK
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | cpuconsumptiontime: 61043 s
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | nevents: 400
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | neventsw: 0
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | pid: 1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | pgrp: 1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | corecount: 9
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | event service: False
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | sizes: {0: 2283857, 1: 2283971, 2: 2284027, 13: 2284027, 23: 2284345, 24: 2284373, 22790: 2318783, 22794: 2327781, 22795: 2327837, 22813: 2328031}
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | --------------------------------------------------
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | 
[2026-01-09 13:12:43] 2026-01-09 18:11:54,722 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,750 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,751 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:12:43] 2026-01-09 18:11:54,752 | INFO     | job 6963188235 has completed (purged errors)
[2026-01-09 13:12:43] 2026-01-09 18:11:54,752 | INFO     | overall cleanup function is called
[2026-01-09 13:12:43] 2026-01-09 18:11:55,761 | INFO     | --- collectZombieJob: --- 10, [1709142]
[2026-01-09 13:12:43] 2026-01-09 18:11:55,761 | INFO     | zombie collector waiting for pid 1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:55,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:12:43] 2026-01-09 18:11:55,761 | INFO     | collected zombie processes
[2026-01-09 13:12:43] 2026-01-09 18:11:55,761 | INFO     | will attempt to kill all subprocesses of pid=1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:56,648 | INFO     | process IDs to be killed: [1709142] (in reverse order)
[2026-01-09 13:12:43] 2026-01-09 18:11:56,988 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:12:43] 2026-01-09 18:11:56,990 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:12:43] 2026-01-09 18:11:57,019 | INFO     | did not find any defunct processes belonging to 1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:57,047 | INFO     | did not find any defunct processes belonging to 1709142
[2026-01-09 13:12:43] 2026-01-09 18:11:57,047 | INFO     | ready for new job
[2026-01-09 13:12:43] 2026-01-09 18:11:57,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:12:43] 2026-01-09 18:11:57,049 | INFO     | ***************************************
[2026-01-09 13:12:43] 2026-01-09 18:11:57,049 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:12:43] 2026-01-09 18:11:57,049 | INFO     | ***************************************
[2026-01-09 13:12:43] 2026-01-09 18:11:57,050 | INFO     | 
[2026-01-09 13:12:43] 2026-01-09 18:11:57,054 | INFO     | architecture information:
[2026-01-09 13:12:43] 2026-01-09 18:11:57,054 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:12:43] 2026-01-09 18:11:57,164 | INFO     | cat /etc/os-release:
[2026-01-09 13:12:43] NAME="CentOS Linux"
[2026-01-09 13:12:43] VERSION="7 (Core)"
[2026-01-09 13:12:43] ID="centos"
[2026-01-09 13:12:43] ID_LIKE="rhel fedora"
[2026-01-09 13:12:43] VERSION_ID="7"
[2026-01-09 13:12:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:12:43] ANSI_COLOR="0;31"
[2026-01-09 13:12:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:12:43] HOME_URL="https://www.centos.org/"
[2026-01-09 13:12:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:12:43] 
[2026-01-09 13:12:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:12:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:12:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:12:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:12:43] 
[2026-01-09 13:12:43] 2026-01-09 18:11:57,164 | INFO     | ***************************************
[2026-01-09 13:12:43] 2026-01-09 18:11:57,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 13:12:43] 2026-01-09 18:11:57,761 | INFO     | sufficient remaining disk space (106329800704 B)
[2026-01-09 13:12:43] 2026-01-09 18:11:57,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:12:43] 2026-01-09 18:11:57,762 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:12:43] 2026-01-09 18:11:57,762 | INFO     | update_server=False
[2026-01-09 13:12:43] 2026-01-09 18:11:57,762 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:12:43] 2026-01-09 18:11:58,027 | INFO     | all data control threads have been joined
[2026-01-09 13:12:43] 2026-01-09 18:11:58,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:12:43] 2026-01-09 18:11:58,368 | INFO     | aborting loop
[2026-01-09 13:12:43] 2026-01-09 18:11:58,405 | INFO     | all job control threads have been joined
[2026-01-09 13:12:43] 2026-01-09 18:11:58,756 | INFO     | all payload control threads have been joined
[2026-01-09 13:12:43] 2026-01-09 18:11:58,768 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:58,772 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:58,981 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,033 | INFO     | [data] control thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,056 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:12:43] 2026-01-09 18:11:59,066 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,230 | INFO     | [job] validate thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,243 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,260 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,316 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,374 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,411 | INFO     | [job] control thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,731 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:11:59,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:12:43] 2026-01-09 18:11:59,762 | INFO     | [payload] control thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:12:00,743 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:12:01,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:12:43] 2026-01-09 18:12:01,063 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:12:05,036 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:12:43] 2026-01-09 18:12:27,488 | INFO     | PID=1693225 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:12:43] 2026-01-09 18:12:27,488 | INFO     | .. there are 70 such processes running
[2026-01-09 13:12:43] 2026-01-09 18:12:27,489 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:12:43] 2026-01-09 18:12:27,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:12:43] 2026-01-09 18:12:27,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:12:43] 2026-01-09 18:12:35,730 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:12:43] 2026-01-09 18:12:37,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331497219904)>', '<ExcThread(monitor, started 140330858960640)>']
[2026-01-09 13:12:43] 2026-01-09 18:12:37,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:12:43] 2026-01-09 18:12:37,564 | INFO     | [monitor] control thread has ended
[2026-01-09 13:12:43] 2026-01-09 18:12:42,307 | INFO     | all workflow threads have been joined
[2026-01-09 13:12:43] 2026-01-09 18:12:42,307 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:12:43] 2026-01-09 18:12:42,308 | INFO     | traces error code: 0
[2026-01-09 13:12:43] 2026-01-09 18:12:42,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:12:43] 2026-01-09 18:12:43,003 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:12:43] 2026-01-09 18:12:43,016 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:12:43] 2026-01-09 18:12:43,059 [wrapper] pilotpid: 1693225
[2026-01-09 13:12:43] 2026-01-09 18:12:43,071 [wrapper] Pilot exit status: 0
[2026-01-09 13:12:43] 2026-01-09 18:12:43,148 [wrapper] pandaids: 6963188235
[2026-01-09 13:12:43] 2026-01-09 18:12:43,315 [wrapper] cleanup supervisor_pilot 1038413 1693226
[2026-01-09 13:12:43] 2026-01-09 18:12:43,320 [wrapper] Test setup, not cleaning
[2026-01-09 13:12:43] 2026-01-09 18:12:43,331 [wrapper] apfmon messages muted
[2026-01-09 13:12:43] 2026-01-09 18:12:43,336 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:12:43] 2026-01-09 18:12:43,341 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:12:43]  *** Error codes and diagnostics ***
[2026-01-09 13:12:43]     "exeErrorCode": 0,
[2026-01-09 13:12:43]     "exeErrorDiag": "",
[2026-01-09 13:12:43]     "pilotErrorCode": 0,
[2026-01-09 13:12:43]     "pilotErrorDiag": "",
[2026-01-09 13:12:43]  *** Listing of results directory ***
[2026-01-09 13:12:43] total 444856
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 13:12:43] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:29 queuedata.json
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas       100 Jan  9 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:12:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 06:49 run_atlas
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas       105 Jan  9 06:49 job.xml
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas 224812074 Jan  9 06:49 EVNT.47898824._001434.pool.root.1
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:49 start_atlas.sh
[2026-01-09 13:12:43] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 06:49 shared
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 06:49 input.tar.gz
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas         0 Jan  9 06:49 boinc_lockfile
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 06:50 pandaJob.out
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas        57 Jan  9 06:50 setup.sh.local
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas    989377 Jan  9 06:50 agis_schedconf.cvmfs.json
[2026-01-09 13:12:43] drwx------. 5 boincer umatlas      4096 Jan  9 06:50 pilot3
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas      6839 Jan  9 13:03 init_data.xml
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas 220652401 Jan  9 13:10 HITS.47898826._037387.pool.root.1
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas       531 Jan  9 13:10 boinc_task_state.xml
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas      1045 Jan  9 13:11 memory_monitor_summary.json
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:11 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas    557763 Jan  9 13:11 log.47898826._037387.job.log.tgz.1
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas      7818 Jan  9 13:11 heartbeat.json
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas        95 Jan  9 13:12 pilot_heartbeat.json
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas        28 Jan  9 13:12 wrapper_checkpoint.txt
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:12 boinc_mmap_file
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas      4825 Jan  9 13:12 pilotlog.txt
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas   2517386 Jan  9 13:12 log.47898826._037387.job.log.1
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas       357 Jan  9 13:12 output.list
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:12 runtime_log
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas   3092480 Jan  9 13:12 result.tar.gz
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas       654 Jan  9 13:12 3PHKDmwEJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm86gKDmQtIkun.diag
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas      9328 Jan  9 13:12 runtime_log.err
[2026-01-09 13:12:43] -rw-r--r--. 1 boincer umatlas     21045 Jan  9 13:12 stderr.txt
[2026-01-09 13:12:43] HITS file was successfully produced:
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas 220652401 Jan  9 13:10 shared/HITS.pool.root.1
[2026-01-09 13:12:43]  *** Contents of shared directory: ***
[2026-01-09 13:12:43] total 438652
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas 224812074 Jan  9 06:49 ATLAS.root_0
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:49 start_atlas.sh
[2026-01-09 13:12:43] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 06:49 input.tar.gz
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas 220652401 Jan  9 13:10 HITS.pool.root.1
[2026-01-09 13:12:43] -rw-------. 1 boincer umatlas   3092480 Jan  9 13:12 result.tar.gz
13:12:45 (1676669): run_atlas exited; CPU time 62420.056860
13:12:45 (1676669): called boinc_finish(0)

</stderr_txt>
]]>

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