Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:03:10 (2894966): wrapper (7.7.26015): starting
07:03:10 (2894966): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:03:10] Arguments: --nthreads 8
[2026-01-09 07:03:10] Threads: 8
[2026-01-09 07:03:10] Checking for CVMFS
[2026-01-09 07:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:03:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:03:12] 2.13.3.0 10749 49699 496804 154942 3 438 29097409 32935937 53967 16776704 0 521757256 99.785 281178654 29023 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 07:03:12] CVMFS is ok
[2026-01-09 07:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:03:12] Further information can be found at the LHC@home message board.
[2026-01-09 07:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:03:12] Checking for apptainer binary...
[2026-01-09 07:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:03:12] Running /usr/bin/apptainer --version
[2026-01-09 07:03:12] apptainer version 1.4.5-2.el9
[2026-01-09 07:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:03:13] lc-12-33.aglt2.org
[2026-01-09 07:03:13] apptainer works
[2026-01-09 07:03:13] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:03:13] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:03:13] Starting ATLAS job with PandaID=6963161441
[2026-01-09 07:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:42:59]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:42:59] 2026-01-09 17:42:18,323 | INFO     | time since job start (20289s) is within the limit (349056.0s)
[2026-01-09 12:42:59] 2026-01-09 17:42:19,681 | INFO     | monitor loop #1045: job 0:6963161441 is in state 'finished'
[2026-01-09 12:42:59] 2026-01-09 17:42:19,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:42:59] 2026-01-09 17:42:20,332 | INFO     | time since job start (20291s) is within the limit (349056.0s)
[2026-01-09 12:42:59] 2026-01-09 17:42:22,205 | INFO     | monitor loop #1046: job 0:6963161441 is in state 'finished'
[2026-01-09 12:42:59] 2026-01-09 17:42:22,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:42:59] 2026-01-09 17:42:22,339 | INFO     | time since job start (20293s) is within the limit (349056.0s)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,675 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 12:42:59] 2026-01-09 17:42:23,686 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2861.8886979166673
[2026-01-09 12:42:59] 2026-01-09 17:42:23,718 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963161441/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,722 | INFO     | extracted standard info from prmon json
[2026-01-09 12:42:59] 2026-01-09 17:42:23,723 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:42:59] 2026-01-09 17:42:23,723 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:42:59] 2026-01-09 17:42:23,723 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:42:59] 2026-01-09 17:42:23,723 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:42:59] 2026-01-09 17:42:23,733 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:42:59] 2026-01-09 17:42:23,734 | INFO     | sum of square deviations: 11143407775.396978
[2026-01-09 12:42:59] 2026-01-09 17:42:23,740 | INFO     | sum of deviations: 92077473360.26978
[2026-01-09 12:42:59] 2026-01-09 17:42:23,741 | INFO     | mean x: 1767970403.8696969
[2026-01-09 12:42:59] 2026-01-09 17:42:23,741 | INFO     | mean y: 2480780.796969697
[2026-01-09 12:42:59] 2026-01-09 17:42:23,741 | INFO     | intersect: -14606178531.0766
[2026-01-09 12:42:59] 2026-01-09 17:42:23,741 | INFO     | chi2: 3.0186547708862426
[2026-01-09 12:42:59] 2026-01-09 17:42:23,742 | INFO     | sum of square deviations: 10644480813.156895
[2026-01-09 12:42:59] 2026-01-09 17:42:23,752 | INFO     | sum of deviations: 111683871196.3877
[2026-01-09 12:42:59] 2026-01-09 17:42:23,752 | INFO     | mean x: 1767970251.363077
[2026-01-09 12:42:59] 2026-01-09 17:42:23,752 | INFO     | mean y: 2486693.1323076924
[2026-01-09 12:42:59] 2026-01-09 17:42:23,752 | INFO     | intersect: -18547385799.307182
[2026-01-09 12:42:59] 2026-01-09 17:42:23,753 | INFO     | chi2: 2.2891642350894443
[2026-01-09 12:42:59] 2026-01-09 17:42:23,753 | INFO     | current chi2=2.2891642350894443 (change=24.16608029617869 %)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,753 | INFO     | right removable region: 324
[2026-01-09 12:42:59] 2026-01-09 17:42:23,753 | INFO     | sum of square deviations: 10644486792.203112
[2026-01-09 12:42:59] 2026-01-09 17:42:23,760 | INFO     | sum of deviations: 20469543979.766174
[2026-01-09 12:42:59] 2026-01-09 17:42:23,760 | INFO     | mean x: 1767970556.3753846
[2026-01-09 12:42:59] 2026-01-09 17:42:23,760 | INFO     | mean y: 2502579.8707692306
[2026-01-09 12:42:59] 2026-01-09 17:42:23,761 | INFO     | intersect: -3397337333.9864006
[2026-01-09 12:42:59] 2026-01-09 17:42:23,761 | INFO     | chi2: 0.950431037953726
[2026-01-09 12:42:59] 2026-01-09 17:42:23,761 | INFO     | current chi2=0.950431037953726 (change=68.51474878411848 %)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,762 | INFO     | sum of square deviations: 10160682371.487581
[2026-01-09 12:42:59] 2026-01-09 17:42:23,769 | INFO     | sum of deviations: 843557224.2124901
[2026-01-09 12:42:59] 2026-01-09 17:42:23,769 | INFO     | mean x: 1767970708.88125
[2026-01-09 12:42:59] 2026-01-09 17:42:23,770 | INFO     | mean y: 2508752.26875
[2026-01-09 12:42:59] 2026-01-09 17:42:23,770 | INFO     | intersect: -144271199.03234637
[2026-01-09 12:42:59] 2026-01-09 17:42:23,770 | INFO     | chi2: 0.8245527248917915
[2026-01-09 12:42:59] 2026-01-09 17:42:23,770 | INFO     | current chi2=0.8245527248917915 (change=13.244339466538246 %)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,770 | INFO     | left removable region: 20
[2026-01-09 12:42:59] 2026-01-09 17:42:23,771 | INFO     | sum of square deviations: 8711415758.496744
[2026-01-09 12:42:59] 2026-01-09 17:42:23,777 | INFO     | sum of deviations: 6154902539.217106
[2026-01-09 12:42:59] 2026-01-09 17:42:23,777 | INFO     | mean x: 1767970830.8782895
[2026-01-09 12:42:59] 2026-01-09 17:42:23,777 | INFO     | mean y: 2520312.0328947366
[2026-01-09 12:42:59] 2026-01-09 17:42:23,777 | INFO     | intersect: -1246609388.339978
[2026-01-09 12:42:59] 2026-01-09 17:42:23,777 | INFO     | chi2: 0.022473381104783478
[2026-01-09 12:42:59] 2026-01-09 17:42:23,778 | INFO     | current memory leak: 0.71 B/s (using 304 data points, chi2=0.02)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,778 | INFO     | could have reported an average CPU frequency of 2857 MHz (14 samples)
[2026-01-09 12:42:59] 2026-01-09 17:42:23,778 | INFO     | ..............................
[2026-01-09 12:42:59] 2026-01-09 17:42:23,778 | INFO     | . Timing measurements:
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . get job = 0 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . initial setup = 4 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . payload setup = 32 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . stage-in = 0 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . payload execution = 20152 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . stage-out = 6 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | . log creation = 1 s
[2026-01-09 12:42:59] 2026-01-09 17:42:23,779 | INFO     | ..............................
[2026-01-09 12:42:59] 2026-01-09 17:42:24,045 | INFO     | 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,045 | INFO     | job summary report
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | --------------------------------------------------
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | PanDA job id: 6963161441
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | task id: 47898826
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | errors: (none)
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | pilot state: finished 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | transexitcode: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | exeerrorcode: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | exeerrordiag: 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | exitcode: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | exitmsg: OK
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | cpuconsumptiontime: 59355 s
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | nevents: 400
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | neventsw: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:24,046 | INFO     | pid: 2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | pgrp: 2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | corecount: 8
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | event service: False
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2283856, 3: 2284027, 14: 2284055, 25: 2284083, 28: 2284501, 36: 2284529, 20190: 2317720, 20191: 2317719, 20199: 2326773, 20201: 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | --------------------------------------------------
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | 
[2026-01-09 12:42:59] 2026-01-09 17:42:24,047 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | job 6963161441 has completed (purged errors)
[2026-01-09 12:42:59] 2026-01-09 17:42:24,130 | INFO     | overall cleanup function is called
[2026-01-09 12:42:59] 2026-01-09 17:42:25,148 | INFO     | --- collectZombieJob: --- 10, [2956394]
[2026-01-09 12:42:59] 2026-01-09 17:42:25,148 | INFO     | zombie collector waiting for pid 2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:25,149 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:42:59] 2026-01-09 17:42:25,149 | INFO     | collected zombie processes
[2026-01-09 12:42:59] 2026-01-09 17:42:25,149 | INFO     | will attempt to kill all subprocesses of pid=2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:28,066 | INFO     | process IDs to be killed: [2956394] (in reverse order)
[2026-01-09 12:42:59] 2026-01-09 17:42:28,433 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:42:59] 2026-01-09 17:42:28,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:42:59] 2026-01-09 17:42:28,584 | INFO     | did not find any defunct processes belonging to 2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:28,647 | INFO     | did not find any defunct processes belonging to 2956394
[2026-01-09 12:42:59] 2026-01-09 17:42:28,647 | INFO     | ready for new job
[2026-01-09 12:42:59] 2026-01-09 17:42:28,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:42:59] 2026-01-09 17:42:28,649 | INFO     | ***************************************
[2026-01-09 12:42:59] 2026-01-09 17:42:28,650 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:42:59] 2026-01-09 17:42:28,650 | INFO     | ***************************************
[2026-01-09 12:42:59] 2026-01-09 17:42:28,650 | INFO     | 
[2026-01-09 12:42:59] 2026-01-09 17:42:28,685 | INFO     | architecture information:
[2026-01-09 12:42:59] 2026-01-09 17:42:28,685 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:42:59] 2026-01-09 17:42:28,777 | INFO     | cat /etc/os-release:
[2026-01-09 12:42:59] NAME="CentOS Linux"
[2026-01-09 12:42:59] VERSION="7 (Core)"
[2026-01-09 12:42:59] ID="centos"
[2026-01-09 12:42:59] ID_LIKE="rhel fedora"
[2026-01-09 12:42:59] VERSION_ID="7"
[2026-01-09 12:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:42:59] ANSI_COLOR="0;31"
[2026-01-09 12:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:42:59] HOME_URL="https://www.centos.org/"
[2026-01-09 12:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:42:59] 
[2026-01-09 12:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:42:59] 
[2026-01-09 12:42:59] 2026-01-09 17:42:28,778 | INFO     | ***************************************
[2026-01-09 12:42:59] 2026-01-09 17:42:29,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 12:42:59] 2026-01-09 17:42:29,357 | INFO     | sufficient remaining disk space (73202139136 B)
[2026-01-09 12:42:59] 2026-01-09 17:42:29,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:42:59] 2026-01-09 17:42:29,357 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:42:59] 2026-01-09 17:42:29,357 | INFO     | update_server=False
[2026-01-09 12:42:59] 2026-01-09 17:42:29,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:42:59] 2026-01-09 17:42:29,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:42:59] 2026-01-09 17:42:29,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:42:59] 2026-01-09 17:42:29,782 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 12:42:59] 2026-01-09 17:42:29,782 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 12:42:59] 2026-01-09 17:42:29,783 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:42:59] 2026-01-09 17:42:29,783 | INFO     | will abort loop
[2026-01-09 12:42:59] 2026-01-09 17:42:29,963 | INFO     | all data control threads have been joined
[2026-01-09 12:42:59] 2026-01-09 17:42:30,163 | INFO     | all payload control threads have been joined
[2026-01-09 12:42:59] 2026-01-09 17:42:30,363 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,364 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,600 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,616 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,620 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,641 | INFO     | [job] validate thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,788 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,969 | INFO     | [data] control thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:30,973 | INFO     | all job control threads have been joined
[2026-01-09 12:42:59] 2026-01-09 17:42:30,994 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,168 | INFO     | [payload] control thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,206 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,411 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,438 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,491 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:31,980 | INFO     | [job] control thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:32,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:42:59] 2026-01-09 17:42:36,681 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:42:59] 2026-01-09 17:42:46,006 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:42:59] 2026-01-09 17:42:47,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208346892096)>', '<ExcThread(monitor, started 140207982630656)>']
[2026-01-09 12:42:59] 2026-01-09 17:42:52,999 | INFO     | all workflow threads have been joined
[2026-01-09 12:42:59] 2026-01-09 17:42:52,999 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:42:59] 2026-01-09 17:42:53,000 | INFO     | traces error code: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:53,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:42:59] 2026-01-09 17:42:58,636 | INFO     | PID=2909917 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 12:42:59] 2026-01-09 17:42:58,637 | INFO     | .. there are 90 such processes running
[2026-01-09 12:42:59] 2026-01-09 17:42:58,638 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:42:59] 2026-01-09 17:42:58,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:42:59] 2026-01-09 17:42:58,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:42:59] 2026-01-09 17:42:58,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:42:59] 2026-01-09 17:42:58,638 | INFO     | [monitor] control thread has ended
[2026-01-09 12:42:59] 2026-01-09 17:42:58,935 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:42:59] 2026-01-09 17:42:58,955 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:42:59] 2026-01-09 17:42:58,978 [wrapper] pilotpid: 2909917
[2026-01-09 12:42:59] 2026-01-09 17:42:58,996 [wrapper] Pilot exit status: 0
[2026-01-09 12:42:59] 2026-01-09 17:42:59,152 [wrapper] pandaids: 6963161441
[2026-01-09 12:42:59] 2026-01-09 17:42:59,399 [wrapper] cleanup supervisor_pilot 2706969 2909918
[2026-01-09 12:42:59] 2026-01-09 17:42:59,403 [wrapper] Test setup, not cleaning
[2026-01-09 12:42:59] 2026-01-09 17:42:59,405 [wrapper] apfmon messages muted
[2026-01-09 12:42:59] 2026-01-09 17:42:59,408 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:42:59] 2026-01-09 17:42:59,410 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:42:59]  *** Error codes and diagnostics ***
[2026-01-09 12:42:59]     "exeErrorCode": 0,
[2026-01-09 12:42:59]     "exeErrorDiag": "",
[2026-01-09 12:42:59]     "pilotErrorCode": 0,
[2026-01-09 12:42:59]     "pilotErrorDiag": "",
[2026-01-09 12:42:59]  *** Listing of results directory ***
[2026-01-09 12:42:59] total 448512
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 12:42:59] -rwx------. 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas       100 Jan  9 07:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:42:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 07:03 run_atlas
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas       105 Jan  9 07:03 job.xml
[2026-01-09 12:42:59] -rw-r--r--. 2 boincer umatlas 224837474 Jan  9 07:03 EVNT.47898824._001280.pool.root.1
[2026-01-09 12:42:59] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:03 start_atlas.sh
[2026-01-09 12:42:59] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 07:03 shared
[2026-01-09 12:42:59] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 07:03 input.tar.gz
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas         0 Jan  9 07:03 boinc_lockfile
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 07:03 pandaJob.out
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas        57 Jan  9 07:03 setup.sh.local
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas    989377 Jan  9 07:04 agis_schedconf.cvmfs.json
[2026-01-09 12:42:59] drwx------. 5 boincer umatlas      4096 Jan  9 07:04 pilot3
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas      6863 Jan  9 12:36 init_data.xml
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas 224914268 Jan  9 12:40 HITS.47898826._033103.pool.root.1
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas       530 Jan  9 12:40 boinc_task_state.xml
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas      1049 Jan  9 12:41 memory_monitor_summary.json
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas    504270 Jan  9 12:41 log.47898826._033103.job.log.tgz.1
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas      7832 Jan  9 12:42 heartbeat.json
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 12:42 boinc_mmap_file
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas        28 Jan  9 12:42 wrapper_checkpoint.txt
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas       823 Jan  9 12:42 pilotlog.txt
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas        95 Jan  9 12:42 pilot_heartbeat.json
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas   2305310 Jan  9 12:42 log.47898826._033103.job.log.1
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas       357 Jan  9 12:42 output.list
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas       620 Jan  9 12:42 runtime_log
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas   2826240 Jan  9 12:42 result.tar.gz
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 12:42 runtime_log.err
[2026-01-09 12:42:59] -rw-------. 1 boincer umatlas       657 Jan  9 12:42 jzwMDmF1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnHgKDmlVWlPm.diag
[2026-01-09 12:42:59] -rw-r--r--. 1 boincer umatlas     21429 Jan  9 12:42 stderr.txt
[2026-01-09 12:43:00] HITS file was successfully produced:
[2026-01-09 12:43:00] -rw-------. 1 boincer umatlas 224914268 Jan  9 12:40 shared/HITS.pool.root.1
[2026-01-09 12:43:00]  *** Contents of shared directory: ***
[2026-01-09 12:43:00] total 442572
[2026-01-09 12:43:00] -rw-r--r--. 2 boincer umatlas 224837474 Jan  9 07:03 ATLAS.root_0
[2026-01-09 12:43:00] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:03 start_atlas.sh
[2026-01-09 12:43:00] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 07:03 input.tar.gz
[2026-01-09 12:43:00] -rw-------. 1 boincer umatlas 224914268 Jan  9 12:40 HITS.pool.root.1
[2026-01-09 12:43:00] -rw-------. 1 boincer umatlas   2826240 Jan  9 12:42 result.tar.gz
12:43:01 (2894966): run_atlas exited; CPU time 60815.189972
12:43:01 (2894966): called boinc_finish(0)

</stderr_txt>
]]>

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