Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:33:29 (2955260): wrapper (7.7.26015): starting
02:33:29 (2955260): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 02:33:29] Arguments: --nthreads 4
[2026-01-10 02:33:29] Threads: 4
[2026-01-10 02:33:29] Checking for CVMFS
[2026-01-10 02:33:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:33:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:33:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:33:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:33:29] 2.9.2.0 2024436 3427 95436 154963 3 57 25940074 36864001 0 130560 0 2404114 99.989 125243 6188 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 02:33:29] CVMFS is ok
[2026-01-10 02:33:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:33:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:33:29] Further information can be found at the LHC@home message board.
[2026-01-10 02:33:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:33:29] Checking for apptainer binary...
[2026-01-10 02:33:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:33:29] Running /usr/bin/apptainer --version
[2026-01-10 02:33:29] apptainer version 1.4.1-1.1
[2026-01-10 02:33:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:33:30] magicA250
[2026-01-10 02:33:30] apptainer works
[2026-01-10 02:33:30] Set ATHENA_PROC_NUMBER=4
[2026-01-10 02:33:30] Set ATHENA_CORE_NUMBER=4
[2026-01-10 02:33:30] Starting ATLAS job with PandaID=6963756141
[2026-01-10 02:33:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:13:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:13:51] 2026-01-10 03:13:16,151 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:13:51] 2026-01-10 03:13:16,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:13:51] 2026-01-10 03:13:16,151 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:13:51] 2026-01-10 03:13:16,151 | INFO     | job 6963756141 has completed (purged errors)
[2026-01-10 04:13:51] 2026-01-10 03:13:16,151 | INFO     | overall cleanup function is called
[2026-01-10 04:13:51] 2026-01-10 03:13:17,158 | INFO     | --- collectZombieJob: --- 10, [2965622]
[2026-01-10 04:13:51] 2026-01-10 03:13:17,158 | INFO     | zombie collector waiting for pid 2965622
[2026-01-10 04:13:51] 2026-01-10 03:13:17,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:13:51] 2026-01-10 03:13:17,158 | INFO     | collected zombie processes
[2026-01-10 04:13:51] 2026-01-10 03:13:17,158 | INFO     | will attempt to kill all subprocesses of pid=2965622
[2026-01-10 04:13:51] 2026-01-10 03:13:17,202 | INFO     | process IDs to be killed: [2965622] (in reverse order)
[2026-01-10 04:13:51] 2026-01-10 03:13:17,235 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:13:51] 2026-01-10 03:13:17,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:13:51] 2026-01-10 03:13:17,237 | INFO     | did not find any defunct processes belonging to 2965622
[2026-01-10 04:13:51] 2026-01-10 03:13:17,238 | INFO     | did not find any defunct processes belonging to 2965622
[2026-01-10 04:13:51] 2026-01-10 03:13:17,238 | INFO     | ready for new job
[2026-01-10 04:13:51] 2026-01-10 03:13:17,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:13:51] 2026-01-10 03:13:17,239 | INFO     | ***************************************
[2026-01-10 04:13:51] 2026-01-10 03:13:17,239 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:13:51] 2026-01-10 03:13:17,239 | INFO     | ***************************************
[2026-01-10 04:13:51] 2026-01-10 03:13:17,239 | INFO     | 
[2026-01-10 04:13:51] 2026-01-10 03:13:17,240 | INFO     | architecture information:
[2026-01-10 04:13:51] 2026-01-10 03:13:17,240 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:13:51] 2026-01-10 03:13:17,254 | INFO     | cat /etc/os-release:
[2026-01-10 04:13:51] NAME="CentOS Linux"
[2026-01-10 04:13:51] VERSION="7 (Core)"
[2026-01-10 04:13:51] ID="centos"
[2026-01-10 04:13:51] ID_LIKE="rhel fedora"
[2026-01-10 04:13:51] VERSION_ID="7"
[2026-01-10 04:13:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:13:51] ANSI_COLOR="0;31"
[2026-01-10 04:13:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:13:51] HOME_URL="https://www.centos.org/"
[2026-01-10 04:13:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:13:51] 
[2026-01-10 04:13:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:13:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:13:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:13:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:13:51] 
[2026-01-10 04:13:51] 2026-01-10 03:13:17,254 | INFO     | ***************************************
[2026-01-10 04:13:51] 2026-01-10 03:13:17,756 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 04:13:51] 2026-01-10 03:13:17,773 | INFO     | sufficient remaining disk space (334213677056 B)
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | INFO     | update_server=False
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:13:51] 2026-01-10 03:13:17,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:13:51] 2026-01-10 03:13:18,199 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 04:13:51] 2026-01-10 03:13:18,199 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 04:13:51] 2026-01-10 03:13:18,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:13:51] 2026-01-10 03:13:18,199 | INFO     | will abort loop
[2026-01-10 04:13:51] 2026-01-10 03:13:18,555 | INFO     | all data control threads have been joined
[2026-01-10 04:13:51] 2026-01-10 03:13:18,632 | INFO     | all job control threads have been joined
[2026-01-10 04:13:51] 2026-01-10 03:13:18,748 | INFO     | all payload control threads have been joined
[2026-01-10 04:13:51] 2026-01-10 03:13:18,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:13:51] 2026-01-10 03:13:18,779 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:18,780 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,117 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,205 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,238 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,397 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,403 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,560 | INFO     | [data] control thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,638 | INFO     | [job] control thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,754 | INFO     | [payload] control thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:19,970 | INFO     | [job] validate thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:20,132 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:20,356 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:20,765 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:21,781 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:27,997 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:13:51] 2026-01-10 03:13:29,003 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:13:51] 2026-01-10 03:13:45,420 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:13:51] 2026-01-10 03:13:46,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264605607744)>', '<ExcThread(monitor, started 140263859136256)>']
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | INFO     | PID=2959044 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:13:51] 2026-01-10 03:13:47,472 | INFO     | [monitor] control thread has ended
[2026-01-10 04:13:51] 2026-01-10 03:13:51,452 | INFO     | all workflow threads have been joined
[2026-01-10 04:13:51] 2026-01-10 03:13:51,452 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:13:51] 2026-01-10 03:13:51,453 | INFO     | traces error code: 0
[2026-01-10 04:13:51] 2026-01-10 03:13:51,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:13:51] 2026-01-10 03:13:51,535 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:13:51] 2026-01-10 03:13:51,539 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:13:51] 2026-01-10 03:13:51,543 [wrapper] pilotpid: 2959044
[2026-01-10 04:13:51] 2026-01-10 03:13:51,547 [wrapper] Pilot exit status: 0
[2026-01-10 04:13:51] 2026-01-10 03:13:51,559 [wrapper] pandaids: 6963756141
[2026-01-10 04:13:51] 2026-01-10 03:13:51,581 [wrapper] cleanup supervisor_pilot 2977869 2959045
[2026-01-10 04:13:51] 2026-01-10 03:13:51,585 [wrapper] Test setup, not cleaning
[2026-01-10 04:13:51] 2026-01-10 03:13:51,589 [wrapper] apfmon messages muted
[2026-01-10 04:13:51] 2026-01-10 03:13:51,593 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:13:51] 2026-01-10 03:13:51,597 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:13:51]  *** Error codes and diagnostics ***
[2026-01-10 04:13:51]     "exeErrorCode": 0,
[2026-01-10 04:13:51]     "exeErrorDiag": "",
[2026-01-10 04:13:51]     "pilotErrorCode": 0,
[2026-01-10 04:13:51]     "pilotErrorDiag": "",
[2026-01-10 04:13:51]  *** Listing of results directory ***
[2026-01-10 04:13:51] total 439572
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 04:13:51] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:26 queuedata.json
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:13:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:33 run_atlas
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:33 job.xml
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc 222919515 Jan 10 02:33 EVNT.47898824._000467.pool.root.1
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc    592405 Jan 10 02:33 input.tar.gz
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:33 start_atlas.sh
[2026-01-10 04:13:51] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:33 shared
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:33 boinc_setup_complete
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc      6378 Jan 10 02:33 init_data.xml
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:33 boinc_lockfile
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc      2519 Jan 10 02:33 pandaJob.out
[2026-01-10 04:13:51] -rw------- 1 boinc boinc    989382 Jan 10 02:33 agis_schedconf.cvmfs.json
[2026-01-10 04:13:51] -rw------- 1 boinc boinc   1516240 Jan 10 02:33 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:13:51] drwx------ 5 boinc boinc      4096 Jan 10 02:33 pilot3
[2026-01-10 04:13:51] -rw------- 1 boinc boinc 221007022 Jan 10 04:12 HITS.47898826._039767.pool.root.1
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc       530 Jan 10 04:12 boinc_task_state.xml
[2026-01-10 04:13:51] -rw------- 1 boinc boinc      1025 Jan 10 04:13 memory_monitor_summary.json
[2026-01-10 04:13:51] -rw------- 1 boinc boinc    281214 Jan 10 04:13 log.47898826._039767.job.log.tgz.1
[2026-01-10 04:13:51] -rw------- 1 boinc boinc        95 Jan 10 04:13 pilot_heartbeat.json
[2026-01-10 04:13:51] -rw------- 1 boinc boinc      7776 Jan 10 04:13 heartbeat.json
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:13 boinc_mmap_file
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:13 wrapper_checkpoint.txt
[2026-01-10 04:13:51] -rw------- 1 boinc boinc      5010 Jan 10 04:13 pilotlog.txt
[2026-01-10 04:13:51] -rw------- 1 boinc boinc    867765 Jan 10 04:13 log.47898826._039767.job.log.1
[2026-01-10 04:13:51] -rw------- 1 boinc boinc       357 Jan 10 04:13 output.list
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:13 runtime_log
[2026-01-10 04:13:51] -rw------- 1 boinc boinc   1167360 Jan 10 04:13 result.tar.gz
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc      8912 Jan 10 04:13 runtime_log.err
[2026-01-10 04:13:51] -rw------- 1 boinc boinc       662 Jan 10 04:13 NFsNDmTDJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDma3gKDmYW4cTo.diag
[2026-01-10 04:13:51] -rw-r--r-- 1 boinc boinc     11438 Jan 10 04:13 stderr.txt
[2026-01-10 04:13:51] HITS file was successfully produced:
[2026-01-10 04:13:51] -rw------- 1 boinc boinc 221007022 Jan 10 04:12 shared/HITS.pool.root.1
[2026-01-10 04:13:51]  *** Contents of shared directory: ***
[2026-01-10 04:13:51] total 435268
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc 222919515 Jan 10 02:33 ATLAS.root_0
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc    592405 Jan 10 02:33 input.tar.gz
[2026-01-10 04:13:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:33 start_atlas.sh
[2026-01-10 04:13:51] -rw------- 1 boinc boinc 221007022 Jan 10 04:12 HITS.pool.root.1
[2026-01-10 04:13:51] -rw------- 1 boinc boinc   1167360 Jan 10 04:13 result.tar.gz
04:13:53 (2955260): run_atlas exited; CPU time 22731.209288
04:13:53 (2955260): called boinc_finish(0)

</stderr_txt>
]]>

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