Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:55 (525946): wrapper (7.7.26015): starting
00:51:55 (525946): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 00:51:55] Arguments: --nthreads 4
[2026-01-10 00:51:55] Threads: 4
[2026-01-10 00:51:55] Checking for CVMFS
[2026-01-10 00:51:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:51:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:51:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:51:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:51:55] 2.9.2.0 3912768 2884 98808 154961 2 57 21176927 36864000 0 130560 0 2098336 99.989 111334 6115 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:51:55] CVMFS is ok
[2026-01-10 00:51:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:51:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:51:55] Further information can be found at the LHC@home message board.
[2026-01-10 00:51:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:51:55] Checking for apptainer binary...
[2026-01-10 00:51:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:51:55] Running /usr/bin/apptainer --version
[2026-01-10 00:51:55] apptainer version 1.4.1-1.1
[2026-01-10 00:51:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:51:55] thA375a
[2026-01-10 00:51:55] apptainer works
[2026-01-10 00:51:55] Set ATHENA_PROC_NUMBER=4
[2026-01-10 00:51:55] Set ATHENA_CORE_NUMBER=4
[2026-01-10 00:51:55] Starting ATLAS job with PandaID=6963187252
[2026-01-10 00:51:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:31:19]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | job 6963187252 has completed (purged errors)
[2026-01-10 02:31:19] 2026-01-10 01:30:46,284 | INFO     | overall cleanup function is called
[2026-01-10 02:31:19] 2026-01-10 01:30:47,291 | INFO     | --- collectZombieJob: --- 10, [536299]
[2026-01-10 02:31:19] 2026-01-10 01:30:47,291 | INFO     | zombie collector waiting for pid 536299
[2026-01-10 02:31:19] 2026-01-10 01:30:47,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:31:19] 2026-01-10 01:30:47,292 | INFO     | collected zombie processes
[2026-01-10 02:31:19] 2026-01-10 01:30:47,292 | INFO     | will attempt to kill all subprocesses of pid=536299
[2026-01-10 02:31:19] 2026-01-10 01:30:47,336 | INFO     | process IDs to be killed: [536299] (in reverse order)
[2026-01-10 02:31:19] 2026-01-10 01:30:47,370 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:31:19] 2026-01-10 01:30:47,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:31:19] 2026-01-10 01:30:47,372 | INFO     | did not find any defunct processes belonging to 536299
[2026-01-10 02:31:19] 2026-01-10 01:30:47,373 | INFO     | did not find any defunct processes belonging to 536299
[2026-01-10 02:31:19] 2026-01-10 01:30:47,373 | INFO     | ready for new job
[2026-01-10 02:31:19] 2026-01-10 01:30:47,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:31:19] 2026-01-10 01:30:47,374 | INFO     | ***************************************
[2026-01-10 02:31:19] 2026-01-10 01:30:47,374 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:31:19] 2026-01-10 01:30:47,374 | INFO     | ***************************************
[2026-01-10 02:31:19] 2026-01-10 01:30:47,374 | INFO     | 
[2026-01-10 02:31:19] 2026-01-10 01:30:47,375 | INFO     | architecture information:
[2026-01-10 02:31:19] 2026-01-10 01:30:47,375 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:31:19] 2026-01-10 01:30:47,389 | INFO     | cat /etc/os-release:
[2026-01-10 02:31:19] NAME="CentOS Linux"
[2026-01-10 02:31:19] VERSION="7 (Core)"
[2026-01-10 02:31:19] ID="centos"
[2026-01-10 02:31:19] ID_LIKE="rhel fedora"
[2026-01-10 02:31:19] VERSION_ID="7"
[2026-01-10 02:31:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:31:19] ANSI_COLOR="0;31"
[2026-01-10 02:31:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:31:19] HOME_URL="https://www.centos.org/"
[2026-01-10 02:31:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:31:19] 
[2026-01-10 02:31:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:31:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:31:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:31:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:31:19] 
[2026-01-10 02:31:19] 2026-01-10 01:30:47,389 | INFO     | ***************************************
[2026-01-10 02:31:19] 2026-01-10 01:30:47,893 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 02:31:19] 2026-01-10 01:30:47,911 | INFO     | sufficient remaining disk space (238453522432 B)
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | INFO     | update_server=False
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:31:19] 2026-01-10 01:30:47,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:31:19] 2026-01-10 01:30:48,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:31:19] 2026-01-10 01:30:48,183 | INFO     | aborting loop
[2026-01-10 02:31:19] 2026-01-10 01:30:48,218 | INFO     | all payload control threads have been joined
[2026-01-10 02:31:19] 2026-01-10 01:30:48,502 | INFO     | all data control threads have been joined
[2026-01-10 02:31:19] 2026-01-10 01:30:48,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:31:19] 2026-01-10 01:30:48,917 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:48,918 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,143 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,185 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,224 | INFO     | [payload] control thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,231 | INFO     | all job control threads have been joined
[2026-01-10 02:31:19] 2026-01-10 01:30:49,507 | INFO     | [data] control thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,637 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,879 | INFO     | [job] validate thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,918 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,978 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:49,982 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:50,075 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:50,237 | INFO     | [job] control thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:50,520 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:52,800 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:30:58,192 | INFO     | job.realtimelogging is not enabled
[2026-01-10 02:31:19] 2026-01-10 01:30:59,198 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:31:19] 2026-01-10 01:31:10,544 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:31:19] 2026-01-10 01:31:12,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140526596265792)>', '<ExcThread(monitor, started 140525290125056)>']
[2026-01-10 02:31:19] 2026-01-10 01:31:17,256 | INFO     | all workflow threads have been joined
[2026-01-10 02:31:19] 2026-01-10 01:31:17,257 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:31:19] 2026-01-10 01:31:17,257 | INFO     | traces error code: 0
[2026-01-10 02:31:19] 2026-01-10 01:31:17,257 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | INFO     | PID=529725 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:31:19] 2026-01-10 01:31:18,925 | INFO     | [monitor] control thread has ended
[2026-01-10 02:31:19] 2026-01-10 01:31:19,002 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:31:19] 2026-01-10 01:31:19,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:31:19] 2026-01-10 01:31:19,010 [wrapper] pilotpid: 529725
[2026-01-10 02:31:19] 2026-01-10 01:31:19,014 [wrapper] Pilot exit status: 0
[2026-01-10 02:31:19] 2026-01-10 01:31:19,026 [wrapper] pandaids: 6963187252
[2026-01-10 02:31:19] 2026-01-10 01:31:19,048 [wrapper] cleanup supervisor_pilot  548562 529726
[2026-01-10 02:31:19] 2026-01-10 01:31:19,053 [wrapper] Test setup, not cleaning
[2026-01-10 02:31:19] 2026-01-10 01:31:19,057 [wrapper] apfmon messages muted
[2026-01-10 02:31:19] 2026-01-10 01:31:19,061 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:31:19] 2026-01-10 01:31:19,064 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:31:19]  *** Error codes and diagnostics ***
[2026-01-10 02:31:19]     "exeErrorCode": 0,
[2026-01-10 02:31:19]     "exeErrorDiag": "",
[2026-01-10 02:31:19]     "pilotErrorCode": 0,
[2026-01-10 02:31:19]     "pilotErrorDiag": "",
[2026-01-10 02:31:19]  *** Listing of results directory ***
[2026-01-10 02:31:19] total 439764
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 02:31:19] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:28 queuedata.json
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:31:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:51 run_atlas
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:51 job.xml
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc 225328712 Jan 10 00:51 EVNT.47898824._001424.pool.root.1
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc    592402 Jan 10 00:51 input.tar.gz
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:51 start_atlas.sh
[2026-01-10 02:31:19] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:51 shared
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:51 boinc_setup_complete
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc      6378 Jan 10 00:51 init_data.xml
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:51 boinc_lockfile
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc      2519 Jan 10 00:51 pandaJob.out
[2026-01-10 02:31:19] -rw------- 1 boinc boinc    989374 Jan 10 00:52 agis_schedconf.cvmfs.json
[2026-01-10 02:31:19] -rw------- 1 boinc boinc   1516240 Jan 10 00:52 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:31:19] drwx------ 5 boinc boinc      4096 Jan 10 00:52 pilot3
[2026-01-10 02:31:19] -rw------- 1 boinc boinc 218835785 Jan 10 02:30 HITS.47898826._037126.pool.root.1
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc       529 Jan 10 02:30 boinc_task_state.xml
[2026-01-10 02:31:19] -rw------- 1 boinc boinc        95 Jan 10 02:30 pilot_heartbeat.json
[2026-01-10 02:31:19] -rw------- 1 boinc boinc      1016 Jan 10 02:30 memory_monitor_summary.json
[2026-01-10 02:31:19] -rw------- 1 boinc boinc    270524 Jan 10 02:30 log.47898826._037126.job.log.tgz.1
[2026-01-10 02:31:19] -rw------- 1 boinc boinc      7767 Jan 10 02:30 heartbeat.json
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc      8192 Jan 10 02:31 boinc_mmap_file
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc        27 Jan 10 02:31 wrapper_checkpoint.txt
[2026-01-10 02:31:19] -rw------- 1 boinc boinc       746 Jan 10 02:31 pilotlog.txt
[2026-01-10 02:31:19] -rw------- 1 boinc boinc    859166 Jan 10 02:31 log.47898826._037126.job.log.1
[2026-01-10 02:31:19] -rw------- 1 boinc boinc       357 Jan 10 02:31 output.list
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc       620 Jan 10 02:31 runtime_log
[2026-01-10 02:31:19] -rw------- 1 boinc boinc   1146880 Jan 10 02:31 result.tar.gz
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc      8902 Jan 10 02:31 runtime_log.err
[2026-01-10 02:31:19] -rw------- 1 boinc boinc       660 Jan 10 02:31 L0NKDmjEJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdHmKDmkVqSTm.diag
[2026-01-10 02:31:19] -rw-r--r-- 1 boinc boinc     11914 Jan 10 02:31 stderr.txt
[2026-01-10 02:31:19] HITS file was successfully produced:
[2026-01-10 02:31:19] -rw------- 1 boinc boinc 218835785 Jan 10 02:30 shared/HITS.pool.root.1
[2026-01-10 02:31:19]  *** Contents of shared directory: ***
[2026-01-10 02:31:19] total 435480
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc 225328712 Jan 10 00:51 ATLAS.root_0
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc    592402 Jan 10 00:51 input.tar.gz
[2026-01-10 02:31:19] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:51 start_atlas.sh
[2026-01-10 02:31:19] -rw------- 1 boinc boinc 218835785 Jan 10 02:30 HITS.pool.root.1
[2026-01-10 02:31:19] -rw------- 1 boinc boinc   1146880 Jan 10 02:31 result.tar.gz
02:31:20 (525946): run_atlas exited; CPU time 22739.099751
02:31:20 (525946): called boinc_finish(0)

</stderr_txt>
]]>

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