Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:27:20 (1021765): wrapper (7.7.26015): starting
14:27:20 (1021765): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 14:27:20] Arguments: --nthreads 4
[2026-01-09 14:27:20] Threads: 4
[2026-01-09 14:27:20] Checking for CVMFS
[2026-01-09 14:27:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:27:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:27:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:27:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:27:20] 2.12.7.0 702796 1666 72748 154945 1 56 3835216 4097024 0 130560 0 1002652 99.986 62918 27595 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2026-01-09 14:27:20] CVMFS is ok
[2026-01-09 14:27:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:27:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:27:20] Further information can be found at the LHC@home message board.
[2026-01-09 14:27:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:27:20] Checking for apptainer binary...
[2026-01-09 14:27:20] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-01-09 14:27:20] apptainer is not installed, using version from CVMFS
[2026-01-09 14:27:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:27:20] pckeatlas05
[2026-01-09 14:27:20] apptainer works
[2026-01-09 14:27:20] Set ATHENA_PROC_NUMBER=4
[2026-01-09 14:27:20] Set ATHENA_CORE_NUMBER=4
[2026-01-09 14:27:20] Starting ATLAS job with PandaID=6963453290
[2026-01-09 14:27:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:32:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:32:49] 2026-01-09 16:31:55,148 | INFO     | extracted standard info from prmon json
[2026-01-09 17:32:49] 2026-01-09 16:31:55,148 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:32:49] 2026-01-09 16:31:55,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:32:49] 2026-01-09 16:31:55,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:32:49] 2026-01-09 16:31:55,148 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:32:49] 2026-01-09 16:31:55,150 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:32:49] 2026-01-09 16:31:55,150 | INFO     | sum of square deviations: 1869302025.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,151 | INFO     | sum of deviations: -69812226499.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,151 | INFO     | mean x: 1767970784.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,151 | INFO     | mean y: 2475028.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,151 | INFO     | intersect: 66030315991.759415
[2026-01-09 17:32:49] 2026-01-09 16:31:55,151 | INFO     | chi2: 2.069098176889042
[2026-01-09 17:32:49] 2026-01-09 16:31:55,152 | INFO     | sum of square deviations: 1719429448.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,152 | INFO     | sum of deviations: -56504969841.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,152 | INFO     | mean x: 1767970632.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,152 | INFO     | mean y: 2488331.073446328
[2026-01-09 17:32:49] 2026-01-09 16:31:55,152 | INFO     | intersect: 58102649030.96958
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | chi2: 1.418195077251372
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | current chi2=1.418195077251372 (change=31.45829941314454 %)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | sum of square deviations: 1577789583.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | sum of deviations: -53937225318.499985
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | mean x: 1767970479.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,153 | INFO     | mean y: 2491096.4244186045
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | intersect: 60441109234.54908
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | chi2: 1.408701525379015
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | current chi2=1.408701525379015 (change=0.6694108606523113 %)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | right removable region: 171
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | sum of square deviations: 1719429448.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,154 | INFO     | sum of deviations: -82628281084.99998
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | mean x: 1767970937.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | mean y: 2487703.15819209
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | intersect: 84963461067.00789
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | chi2: 1.0148322048631506
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | current chi2=1.0148322048631506 (change=50.95292160621471 %)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,155 | INFO     | sum of square deviations: 1577789583.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | sum of deviations: -75048461924.49998
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | mean x: 1767971089.5
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | mean y: 2479536.784883721
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | intersect: 84097033350.27492
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | chi2: 1.0129858147651205
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | current chi2=1.0129858147651205 (change=0.18194043204207336 %)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | left removable region: 20
[2026-01-09 17:32:49] 2026-01-09 16:31:55,156 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | sum of deviations: -44739096409.99999
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | mean x: 1767971059.0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | mean y: 2477909.3509933776
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | intersect: 74094618424.7388
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | chi2: 0.3159890511935165
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | current memory leak: -41.91 B/s (using 151 data points, chi2=0.32)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,157 | INFO     | could have reported an average CPU frequency of 3722 MHz (10 samples)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | ..............................
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . Timing measurements:
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . get job = 0 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . initial setup = 0 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . payload setup = 3 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . stage-in = 0 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . payload execution = 11047 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . stage-out = 0 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | . log creation = 0 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,158 | INFO     | ..............................
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | 
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | job summary report
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | --------------------------------------------------
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | PanDA job id: 6963453290
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | task id: 47898826
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | errors: (none)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | pilot state: finished 
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | transexitcode: 0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | exeerrorcode: 0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | exeerrordiag: 
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | exitcode: 0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,207 | INFO     | exitmsg: OK
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | cpuconsumptiontime: 42936 s
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | nevents: 400
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | neventsw: 0
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | pid: 1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | pgrp: 1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | corecount: 4
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | event service: False
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | sizes: {0: 2283087, 1: 2283943, 3: 2284205, 11: 2284233, 11054: 2313607, 11055: 2313606, 11056: 2322844, 11058: 2322982}
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | --------------------------------------------------
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | 
[2026-01-09 17:32:49] 2026-01-09 16:31:55,208 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | job 6963453290 has completed (purged errors)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,218 | INFO     | overall cleanup function is called
[2026-01-09 17:32:49] 2026-01-09 16:31:55,532 | WARNING  | process 1032605 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 17:32:49] 2026-01-09 16:31:55,566 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:32:49] 2026-01-09 16:31:55,606 | INFO     | number of running child processes to parent process 1032605: 1
[2026-01-09 17:32:49] 2026-01-09 16:31:55,606 | INFO     | maximum number of monitored processes: 6
[2026-01-09 17:32:49] 2026-01-09 16:31:55,606 | INFO     | aborting job monitoring since job object (job id=6963453290) has expired
[2026-01-09 17:32:49] 2026-01-09 16:31:56,224 | INFO     | --- collectZombieJob: --- 10, [1032605]
[2026-01-09 17:32:49] 2026-01-09 16:31:56,224 | INFO     | zombie collector waiting for pid 1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:56,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:32:49] 2026-01-09 16:31:56,224 | INFO     | collected zombie processes
[2026-01-09 17:32:49] 2026-01-09 16:31:56,224 | INFO     | will attempt to kill all subprocesses of pid=1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:56,264 | INFO     | process IDs to be killed: [1032605] (in reverse order)
[2026-01-09 17:32:49] 2026-01-09 16:31:56,283 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:32:49] 2026-01-09 16:31:56,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:32:49] 2026-01-09 16:31:56,285 | INFO     | did not find any defunct processes belonging to 1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:56,286 | INFO     | did not find any defunct processes belonging to 1032605
[2026-01-09 17:32:49] 2026-01-09 16:31:56,286 | INFO     | ready for new job
[2026-01-09 17:32:49] 2026-01-09 16:31:56,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:32:49] 2026-01-09 16:31:56,287 | INFO     | ***************************************
[2026-01-09 17:32:49] 2026-01-09 16:31:56,287 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:32:49] 2026-01-09 16:31:56,287 | INFO     | ***************************************
[2026-01-09 17:32:49] 2026-01-09 16:31:56,287 | INFO     | 
[2026-01-09 17:32:49] 2026-01-09 16:31:56,287 | INFO     | architecture information:
[2026-01-09 17:32:49] 2026-01-09 16:31:56,288 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:32:49] 2026-01-09 16:31:56,293 | INFO     | cat /etc/os-release:
[2026-01-09 17:32:49] NAME="CentOS Linux"
[2026-01-09 17:32:49] VERSION="7 (Core)"
[2026-01-09 17:32:49] ID="centos"
[2026-01-09 17:32:49] ID_LIKE="rhel fedora"
[2026-01-09 17:32:49] VERSION_ID="7"
[2026-01-09 17:32:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:32:49] ANSI_COLOR="0;31"
[2026-01-09 17:32:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:32:49] HOME_URL="https://www.centos.org/"
[2026-01-09 17:32:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:32:49] 
[2026-01-09 17:32:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:32:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:32:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:32:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:32:49] 
[2026-01-09 17:32:49] 2026-01-09 16:31:56,293 | INFO     | ***************************************
[2026-01-09 17:32:49] 2026-01-09 16:31:56,796 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-09 17:32:49] 2026-01-09 16:31:56,803 | INFO     | sufficient remaining disk space (43886051328 B)
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | INFO     | update_server=False
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:32:49] 2026-01-09 16:31:56,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:32:49] 2026-01-09 16:31:56,805 | INFO     | aborting loop
[2026-01-09 17:32:49] 2026-01-09 16:31:56,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:32:49] 2026-01-09 16:31:56,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:32:49] 2026-01-09 16:31:56,931 | INFO     | job.realtimelogging is not enabled
[2026-01-09 17:32:49] 2026-01-09 16:31:57,541 | INFO     | all data control threads have been joined
[2026-01-09 17:32:49] 2026-01-09 16:31:57,542 | INFO     | all job control threads have been joined
[2026-01-09 17:32:49] 2026-01-09 16:31:57,809 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:57,809 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:57,810 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:57,870 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:57,932 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:57,965 | INFO     | all payload control threads have been joined
[2026-01-09 17:32:49] 2026-01-09 16:31:57,978 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,055 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,545 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,546 | INFO     | [data] control thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,547 | INFO     | [job] control thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,810 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,971 | INFO     | [payload] control thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:58,999 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:59,210 | INFO     | [job] validate thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:31:59,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:32:49] 2026-01-09 16:31:59,334 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:32:03,230 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:32:49] 2026-01-09 16:32:42,667 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:32:49] 2026-01-09 16:32:44,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039161698112)>', '<ExcThread(monitor, started 140038832621312)>']
[2026-01-09 17:32:49] 2026-01-09 16:32:45,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:32:49] 2026-01-09 16:32:45,030 | INFO     | [monitor] control thread has ended
[2026-01-09 17:32:49] 2026-01-09 16:32:49,465 | INFO     | all workflow threads have been joined
[2026-01-09 17:32:49] 2026-01-09 16:32:49,465 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:32:49] 2026-01-09 16:32:49,465 | INFO     | traces error code: 0
[2026-01-09 17:32:49] 2026-01-09 16:32:49,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:32:49] 2026-01-09 16:32:49,521 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:32:49] 2026-01-09 16:32:49,522 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:32:49] 2026-01-09 16:32:49,523 [wrapper] pilotpid: 1025424
[2026-01-09 17:32:49] 2026-01-09 16:32:49,524 [wrapper] Pilot exit status: 0
[2026-01-09 17:32:49] 2026-01-09 16:32:49,528 [wrapper] pandaids: 6963453290
[2026-01-09 17:32:49] 2026-01-09 16:32:49,540 [wrapper] cleanup supervisor_pilot 1052801 1025425
[2026-01-09 17:32:49] 2026-01-09 16:32:49,541 [wrapper] Test setup, not cleaning
[2026-01-09 17:32:49] 2026-01-09 16:32:49,542 [wrapper] apfmon messages muted
[2026-01-09 17:32:49] 2026-01-09 16:32:49,544 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:32:49] 2026-01-09 16:32:49,545 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:32:49]  *** Error codes and diagnostics ***
[2026-01-09 17:32:49]     "exeErrorCode": 0,
[2026-01-09 17:32:49]     "exeErrorDiag": "",
[2026-01-09 17:32:49]     "pilotErrorCode": 0,
[2026-01-09 17:32:49]     "pilotErrorDiag": "",
[2026-01-09 17:32:49]  *** Listing of results directory ***
[2026-01-09 17:32:49] total 444320
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 17:32:49] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:26 queuedata.json
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc       100 Jan  9 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:32:49] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 14:27 run_atlas
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc       105 Jan  9 14:27 job.xml
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:27 start_atlas.sh
[2026-01-09 17:32:49] drwxrwx--x 2 boinc boinc        68 Jan  9 14:27 shared
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc    592403 Jan  9 14:27 input.tar.gz
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc      6312 Jan  9 14:27 init_data.xml
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc 226590167 Jan  9 14:27 EVNT.47898824._000209.pool.root.1
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:27 boinc_lockfile
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc      2517 Jan  9 14:27 pandaJob.out
[2026-01-09 17:32:49] -rw------- 1 boinc boinc    989377 Jan  9 14:27 agis_schedconf.cvmfs.json
[2026-01-09 17:32:49] drwx------ 5 boinc boinc      4096 Jan  9 14:27 pilot3
[2026-01-09 17:32:49] -rw------- 1 boinc boinc        95 Jan  9 17:31 pilot_heartbeat.json
[2026-01-09 17:32:49] -rw------- 1 boinc boinc 220619343 Jan  9 17:31 HITS.47898826._039594.pool.root.1
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc       530 Jan  9 17:31 boinc_task_state.xml
[2026-01-09 17:32:49] -rw------- 1 boinc boinc      1015 Jan  9 17:31 memory_monitor_summary.json
[2026-01-09 17:32:49] -rw------- 1 boinc boinc   1516240 Jan  9 17:31 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:32:49] -rw------- 1 boinc boinc    365381 Jan  9 17:31 log.47898826._039594.job.log.tgz.1
[2026-01-09 17:32:49] -rw------- 1 boinc boinc      7768 Jan  9 17:31 heartbeat.json
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc      8192 Jan  9 17:32 boinc_mmap_file
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc        28 Jan  9 17:32 wrapper_checkpoint.txt
[2026-01-09 17:32:49] -rw------- 1 boinc boinc      4624 Jan  9 17:32 pilotlog.txt
[2026-01-09 17:32:49] -rw------- 1 boinc boinc   1571136 Jan  9 17:32 log.47898826._039594.job.log.1
[2026-01-09 17:32:49] -rw------- 1 boinc boinc       357 Jan  9 17:32 output.list
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc       620 Jan  9 17:32 runtime_log
[2026-01-09 17:32:49] -rw------- 1 boinc boinc   1955840 Jan  9 17:32 result.tar.gz
[2026-01-09 17:32:49] -rw------- 1 boinc boinc       653 Jan  9 17:32 VvDNDmHDJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE3gKDmoLisVn.diag
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc      8831 Jan  9 17:32 runtime_log.err
[2026-01-09 17:32:49] -rw-r--r-- 1 boinc boinc     21086 Jan  9 17:32 stderr.txt
[2026-01-09 17:32:49] HITS file was successfully produced:
[2026-01-09 17:32:49] -rw------- 1 boinc boinc 220619343 Jan  9 17:31 shared/HITS.pool.root.1
[2026-01-09 17:32:49]  *** Contents of shared directory: ***
[2026-01-09 17:32:49] total 439240
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:27 start_atlas.sh
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc    592403 Jan  9 14:27 input.tar.gz
[2026-01-09 17:32:49] -rw-r--r-- 2 boinc boinc 226590167 Jan  9 14:27 ATLAS.root_0
[2026-01-09 17:32:49] -rw------- 1 boinc boinc 220619343 Jan  9 17:31 HITS.pool.root.1
[2026-01-09 17:32:49] -rw------- 1 boinc boinc   1955840 Jan  9 17:32 result.tar.gz
17:32:50 (1021765): run_atlas exited; CPU time 43007.820865
17:32:50 (1021765): called boinc_finish(0)

</stderr_txt>
]]>

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