Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:47 (2179838): wrapper (7.7.26015): starting
07:04:47 (2179838): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:04:47] Arguments: --nthreads 8
[2026-01-09 07:04:47] Threads: 8
[2026-01-09 07:04:47] Checking for CVMFS
[2026-01-09 07:04:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:04:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:04:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:04:49] 2.13.3.0 12497 93251 228052 154942 0 271 26324783 32935937 23522 16776704 0 489382270 99.477 678216779 37879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 07:04:49] CVMFS is ok
[2026-01-09 07:04:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:04:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:04:49] Further information can be found at the LHC@home message board.
[2026-01-09 07:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:04:49] Checking for apptainer binary...
[2026-01-09 07:04:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:04:49] Running /usr/bin/apptainer --version
[2026-01-09 07:04:49] apptainer version 1.4.5-2.el9
[2026-01-09 07:04:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:04:49] c7-7-35.aglt2.org
[2026-01-09 07:04:49] apptainer works
[2026-01-09 07:04:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:04:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:04:49] Starting ATLAS job with PandaID=6963681836
[2026-01-09 07:04:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 10:23:08]  *** The last 200 lines of the pilot log: ***
[2026-01-09 10:23:08] 2026-01-09 15:22:27,303 | INFO     | time since job start (11827s) is within the limit (349056.0s)
[2026-01-09 10:23:08] 2026-01-09 15:22:29,310 | INFO     | time since job start (11829s) is within the limit (349056.0s)
[2026-01-09 10:23:08] 2026-01-09 15:22:29,774 | INFO     | monitor loop #791: job 0:6963681836 is in state 'finished'
[2026-01-09 10:23:08] 2026-01-09 15:22:29,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:23:08] 2026-01-09 15:22:31,317 | INFO     | time since job start (11831s) is within the limit (349056.0s)
[2026-01-09 10:23:08] 2026-01-09 15:22:32,292 | INFO     | monitor loop #792: job 0:6963681836 is in state 'finished'
[2026-01-09 10:23:08] 2026-01-09 15:22:32,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:23:08] 2026-01-09 15:22:33,338 | INFO     | time since job start (11833s) is within the limit (349056.0s)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,485 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 10:23:08] 2026-01-09 15:22:34,512 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3199.3830729166652
[2026-01-09 10:23:08] 2026-01-09 15:22:34,527 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963681836/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,528 | INFO     | extracted standard info from prmon json
[2026-01-09 10:23:08] 2026-01-09 15:22:34,528 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 10:23:08] 2026-01-09 15:22:34,528 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 10:23:08] 2026-01-09 15:22:34,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 10:23:08] 2026-01-09 15:22:34,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 10:23:08] 2026-01-09 15:22:34,532 | INFO     | fitting pss+swap vs Time
[2026-01-09 10:23:08] 2026-01-09 15:22:34,532 | INFO     | sum of square deviations: 2229247944.321242
[2026-01-09 10:23:08] 2026-01-09 15:22:34,533 | INFO     | sum of deviations: 52633862324.24354
[2026-01-09 10:23:08] 2026-01-09 15:22:34,533 | INFO     | mean x: 1767966255.0932643
[2026-01-09 10:23:08] 2026-01-09 15:22:34,533 | INFO     | mean y: 2434987.2642487045
[2026-01-09 10:23:08] 2026-01-09 15:22:34,533 | INFO     | intersect: -41740293856.12626
[2026-01-09 10:23:08] 2026-01-09 15:22:34,534 | INFO     | chi2: 4.0912359223238735
[2026-01-09 10:23:08] 2026-01-09 15:22:34,534 | INFO     | sum of square deviations: 2060450269.2765956
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | sum of deviations: 63010425718.36169
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | mean x: 1767966102.5957446
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | mean y: 2444133.4521276597
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | intersect: -54063552236.99275
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | chi2: 3.427943330210959
[2026-01-09 10:23:08] 2026-01-09 15:22:34,535 | INFO     | current chi2=3.427943330210959 (change=16.212523665370927 %)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,536 | INFO     | right removable region: 187
[2026-01-09 10:23:08] 2026-01-09 15:22:34,536 | INFO     | sum of square deviations: 2060439289.2765956
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | sum of deviations: -1482796294.042553
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | mean x: 1767966407.5957446
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | mean y: 2483736.4468085105
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | intersect: 1274801756.5982766
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | chi2: 0.9567447339694755
[2026-01-09 10:23:08] 2026-01-09 15:22:34,537 | INFO     | current chi2=0.9567447339694755 (change=76.61477479827093 %)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,538 | INFO     | sum of square deviations: 1900374984.229507
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | sum of deviations: -15651198463.163929
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | mean x: 1767966560.0983605
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | mean y: 2497173.4535519127
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | intersect: 14563200054.70917
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | chi2: 0.7285438987249008
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | current chi2=0.7285438987249008 (change=23.85179945519881 %)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,539 | INFO     | left removable region: 20
[2026-01-09 10:23:08] 2026-01-09 15:22:34,540 | INFO     | sum of square deviations: 1444225279.269463
[2026-01-09 10:23:08] 2026-01-09 15:22:34,540 | INFO     | sum of deviations: -2087145594.4670694
[2026-01-09 10:23:08] 2026-01-09 15:22:34,540 | INFO     | mean x: 1767966682.1017964
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | mean y: 2506328.5568862273
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | intersect: 2557512063.9362397
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | chi2: 0.023924513979357992
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | current memory leak: -1.45 B/s (using 167 data points, chi2=0.02)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | could have reported an average CPU frequency of 3219 MHz (10 samples)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,541 | INFO     | ..............................
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . Timing measurements:
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . get job = 0 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . initial setup = 4 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . payload setup = 18 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . stage-in = 0 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . payload execution = 11744 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . stage-out = 4 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | . log creation = 0 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,542 | INFO     | ..............................
[2026-01-09 10:23:08] 2026-01-09 15:22:34,638 | INFO     | 
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | job summary report
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | --------------------------------------------------
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | PanDA job id: 6963681836
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | task id: 47898826
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | errors: (none)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | pilot state: finished 
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | transexitcode: 0
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | exeerrorcode: 0
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | exeerrordiag: 
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | exitcode: 0
[2026-01-09 10:23:08] 2026-01-09 15:22:34,639 | INFO     | exitmsg: OK
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | cpuconsumptiontime: 44232 s
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | nevents: 400
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | neventsw: 0
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | pid: 2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | pgrp: 2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | corecount: 8
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | event service: False
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | sizes: {0: 2283744, 1: 2283943, 12: 2283943, 15: 2284233, 23: 2284261, 11767: 2314067, 11768: 2314194, 11772: 2323248, 11775: 2323304, 11795: 2323498}
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | --------------------------------------------------
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | 
[2026-01-09 10:23:08] 2026-01-09 15:22:34,640 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 10:23:08] 2026-01-09 15:22:34,790 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,790 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,790 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,790 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,791 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 10:23:08] 2026-01-09 15:22:34,792 | INFO     | job 6963681836 has completed (purged errors)
[2026-01-09 10:23:08] 2026-01-09 15:22:34,792 | INFO     | overall cleanup function is called
[2026-01-09 10:23:08] 2026-01-09 15:22:35,822 | INFO     | --- collectZombieJob: --- 10, [2196818]
[2026-01-09 10:23:08] 2026-01-09 15:22:35,822 | INFO     | zombie collector waiting for pid 2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:35,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 10:23:08] 2026-01-09 15:22:35,822 | INFO     | collected zombie processes
[2026-01-09 10:23:08] 2026-01-09 15:22:35,822 | INFO     | will attempt to kill all subprocesses of pid=2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:36,565 | INFO     | process IDs to be killed: [2196818] (in reverse order)
[2026-01-09 10:23:08] 2026-01-09 15:22:36,753 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 10:23:08] 2026-01-09 15:22:36,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 10:23:08] 2026-01-09 15:22:36,809 | INFO     | did not find any defunct processes belonging to 2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:36,861 | INFO     | did not find any defunct processes belonging to 2196818
[2026-01-09 10:23:08] 2026-01-09 15:22:36,861 | INFO     | ready for new job
[2026-01-09 10:23:08] 2026-01-09 15:22:36,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 10:23:08] 2026-01-09 15:22:36,863 | INFO     | ***************************************
[2026-01-09 10:23:08] 2026-01-09 15:22:36,863 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 10:23:08] 2026-01-09 15:22:36,864 | INFO     | ***************************************
[2026-01-09 10:23:08] 2026-01-09 15:22:36,864 | INFO     | 
[2026-01-09 10:23:08] 2026-01-09 15:22:36,908 | INFO     | architecture information:
[2026-01-09 10:23:08] 2026-01-09 15:22:36,914 | INFO     | executing command: cat /etc/os-release
[2026-01-09 10:23:08] 2026-01-09 15:22:37,009 | INFO     | cat /etc/os-release:
[2026-01-09 10:23:08] NAME="CentOS Linux"
[2026-01-09 10:23:08] VERSION="7 (Core)"
[2026-01-09 10:23:08] ID="centos"
[2026-01-09 10:23:08] ID_LIKE="rhel fedora"
[2026-01-09 10:23:08] VERSION_ID="7"
[2026-01-09 10:23:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 10:23:08] ANSI_COLOR="0;31"
[2026-01-09 10:23:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 10:23:08] HOME_URL="https://www.centos.org/"
[2026-01-09 10:23:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 10:23:08] 
[2026-01-09 10:23:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 10:23:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 10:23:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 10:23:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 10:23:08] 
[2026-01-09 10:23:08] 2026-01-09 15:22:37,010 | INFO     | ***************************************
[2026-01-09 10:23:08] 2026-01-09 15:22:37,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 10:23:08] 2026-01-09 15:22:37,612 | INFO     | sufficient remaining disk space (73254567936 B)
[2026-01-09 10:23:08] 2026-01-09 15:22:37,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 10:23:08] 2026-01-09 15:22:37,613 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 10:23:08] 2026-01-09 15:22:37,613 | INFO     | update_server=False
[2026-01-09 10:23:08] 2026-01-09 15:22:37,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 10:23:08] 2026-01-09 15:22:37,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 10:23:08] 2026-01-09 15:22:38,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:23:08] 2026-01-09 15:22:38,318 | INFO     | aborting loop
[2026-01-09 10:23:08] 2026-01-09 15:22:38,480 | INFO     | all data control threads have been joined
[2026-01-09 10:23:08] 2026-01-09 15:22:38,619 | INFO     | [job] retrieve thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:38,709 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:38,712 | INFO     | [job] validate thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:38,753 | INFO     | all payload control threads have been joined
[2026-01-09 10:23:08] 2026-01-09 15:22:38,773 | INFO     | [payload] failed_post thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 10:23:08] 2026-01-09 15:22:39,232 | INFO     | all job control threads have been joined
[2026-01-09 10:23:08] 2026-01-09 15:22:39,325 | INFO     | [job] job monitor thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,352 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,486 | INFO     | [data] control thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,550 | INFO     | [payload] validate_post thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:23:08] 2026-01-09 15:22:39,713 | INFO     | [data] copytool_out thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,759 | INFO     | [payload] control thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:39,882 | INFO     | [monitor] cgroup control has ended
[2026-01-09 10:23:08] 2026-01-09 15:22:39,899 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:40,049 | INFO     | [data] copytool_in thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:40,238 | INFO     | [job] control thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:40,658 | INFO     | [job] queue monitor thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:43,046 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:48,593 | INFO     | job.realtimelogging is not enabled
[2026-01-09 10:23:08] 2026-01-09 15:22:49,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 10:23:08] 2026-01-09 15:22:50,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721137542976)>', '<ExcThread(monitor, started 139720503842560)>']
[2026-01-09 10:23:08] 2026-01-09 15:22:55,358 | INFO     | all workflow threads have been joined
[2026-01-09 10:23:08] 2026-01-09 15:22:55,358 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 10:23:08] 2026-01-09 15:22:55,358 | INFO     | traces error code: 0
[2026-01-09 10:23:08] 2026-01-09 15:22:55,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 10:23:08] 2026-01-09 15:23:07,210 | INFO     | PID=2187557 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 10:23:08] 2026-01-09 15:23:07,210 | INFO     | .. there are 25 such processes running
[2026-01-09 10:23:08] 2026-01-09 15:23:07,211 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 10:23:08] 2026-01-09 15:23:07,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 10:23:08] 2026-01-09 15:23:07,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 10:23:08] 2026-01-09 15:23:07,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 10:23:08] 2026-01-09 15:23:07,211 | INFO     | [monitor] control thread has ended
[2026-01-09 10:23:08] 2026-01-09 15:23:07,393 [wrapper] ==== pilot stdout END ====
[2026-01-09 10:23:08] 2026-01-09 15:23:07,452 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 10:23:08] 2026-01-09 15:23:07,476 [wrapper] pilotpid: 2187557
[2026-01-09 10:23:08] 2026-01-09 15:23:07,480 [wrapper] Pilot exit status: 0
[2026-01-09 10:23:08] 2026-01-09 15:23:07,556 [wrapper] pandaids: 6963681836
[2026-01-09 10:23:08] 2026-01-09 15:23:07,784 [wrapper] cleanup supervisor_pilot 2876635 2187558
[2026-01-09 10:23:08] 2026-01-09 15:23:07,827 [wrapper] Test setup, not cleaning
[2026-01-09 10:23:08] 2026-01-09 15:23:07,860 [wrapper] apfmon messages muted
[2026-01-09 10:23:08] 2026-01-09 15:23:07,897 [wrapper] ==== wrapper stdout END ====
[2026-01-09 10:23:08] 2026-01-09 15:23:07,953 [wrapper] ==== wrapper stderr END ====
[2026-01-09 10:23:08]  *** Error codes and diagnostics ***
[2026-01-09 10:23:08]     "exeErrorCode": 0,
[2026-01-09 10:23:08]     "exeErrorDiag": "",
[2026-01-09 10:23:08]     "pilotErrorCode": 0,
[2026-01-09 10:23:08]     "pilotErrorDiag": "",
[2026-01-09 10:23:08]  *** Listing of results directory ***
[2026-01-09 10:23:08] total 434068
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 10:23:08] -rwx------. 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:26 queuedata.json
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas       100 Jan  9 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 10:23:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 07:04 run_atlas
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas       105 Jan  9 07:04 job.xml
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas 222422330 Jan  9 07:04 EVNT.47898824._000283.pool.root.1
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:04 start_atlas.sh
[2026-01-09 10:23:08] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 07:04 shared
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 07:04 input.tar.gz
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas         0 Jan  9 07:04 boinc_lockfile
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas      2517 Jan  9 07:04 pandaJob.out
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas        57 Jan  9 07:04 setup.sh.local
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas    989377 Jan  9 07:05 agis_schedconf.cvmfs.json
[2026-01-09 10:23:08] drwx------. 5 boincer umatlas      4096 Jan  9 07:05 pilot3
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas 214095627 Jan  9 10:21 HITS.47898826._039720.pool.root.1
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas       530 Jan  9 10:21 boinc_task_state.xml
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas      1034 Jan  9 10:22 memory_monitor_summary.json
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas   1516240 Jan  9 10:22 agis_ddmendpoints.agis.ALL.json
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas    432898 Jan  9 10:22 log.47898826._039720.job.log.tgz.1
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas      6945 Jan  9 10:22 init_data.xml
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas      7771 Jan  9 10:22 heartbeat.json
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 10:23 boinc_mmap_file
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas        28 Jan  9 10:23 wrapper_checkpoint.txt
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas        95 Jan  9 10:23 pilot_heartbeat.json
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas       823 Jan  9 10:23 pilotlog.txt
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas   1594774 Jan  9 10:23 log.47898826._039720.job.log.1
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas       357 Jan  9 10:23 output.list
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas       620 Jan  9 10:23 runtime_log
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas   2048000 Jan  9 10:23 result.tar.gz
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 10:23 runtime_log.err
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas       654 Jan  9 10:23 7j9MDmHDJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3GmKDmGqm6pn.diag
[2026-01-09 10:23:08] -rw-r--r--. 1 boincer umatlas     21407 Jan  9 10:23 stderr.txt
[2026-01-09 10:23:08] HITS file was successfully produced:
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas 214095627 Jan  9 10:21 shared/HITS.pool.root.1
[2026-01-09 10:23:08]  *** Contents of shared directory: ***
[2026-01-09 10:23:08] total 428892
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas 222422330 Jan  9 07:04 ATLAS.root_0
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:04 start_atlas.sh
[2026-01-09 10:23:08] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 07:04 input.tar.gz
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas 214095627 Jan  9 10:21 HITS.pool.root.1
[2026-01-09 10:23:08] -rw-------. 1 boincer umatlas   2048000 Jan  9 10:23 result.tar.gz
10:23:10 (2179838): run_atlas exited; CPU time 44684.739842
10:23:10 (2179838): called boinc_finish(0)

</stderr_txt>
]]>

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