Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:13:49 (296256): wrapper (7.7.26015): starting
06:13:49 (296256): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:13:49] Arguments: --nthreads 8
[2026-01-09 06:13:49] Threads: 8
[2026-01-09 06:13:49] Checking for CVMFS
[2026-01-09 06:13:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:13:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:13:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:13:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:13:51] 2.13.3.0 7489 93335 405220 154941 3 311 31187118 32935937 15006 16776704 0 444396191 99.520 564094141 39802 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 06:13:51] CVMFS is ok
[2026-01-09 06:13:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:13:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:13:51] Further information can be found at the LHC@home message board.
[2026-01-09 06:13:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:13:51] Checking for apptainer binary...
[2026-01-09 06:13:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:13:51] Running /usr/bin/apptainer --version
[2026-01-09 06:13:51] apptainer version 1.4.5-2.el9
[2026-01-09 06:13:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:13:51] c7-13-32.aglt2.org
[2026-01-09 06:13:51] apptainer works
[2026-01-09 06:13:52] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:13:52] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:13:52] Starting ATLAS job with PandaID=6963193806
[2026-01-09 06:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:42:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:42:22] 2026-01-09 17:41:47,267 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963193806/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,267 | INFO     | extracted standard info from prmon json
[2026-01-09 12:42:22] 2026-01-09 17:41:47,267 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:42:22] 2026-01-09 17:41:47,267 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:42:22] 2026-01-09 17:41:47,268 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:42:22] 2026-01-09 17:41:47,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:42:22] 2026-01-09 17:41:47,294 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:42:22] 2026-01-09 17:41:47,295 | INFO     | sum of square deviations: 16615178989.554537
[2026-01-09 12:42:22] 2026-01-09 17:41:47,306 | INFO     | sum of deviations: 67140904542.53325
[2026-01-09 12:42:22] 2026-01-09 17:41:47,306 | INFO     | mean x: 1767969002.668435
[2026-01-09 12:42:22] 2026-01-09 17:41:47,306 | INFO     | mean y: 2511067.700265252
[2026-01-09 12:42:22] 2026-01-09 17:41:47,306 | INFO     | intersect: -7141741673.539787
[2026-01-09 12:42:22] 2026-01-09 17:41:47,307 | INFO     | chi2: 8.575002958589135
[2026-01-09 12:42:22] 2026-01-09 17:41:47,307 | INFO     | sum of square deviations: 15962885857.642445
[2026-01-09 12:42:22] 2026-01-09 17:41:47,318 | INFO     | sum of deviations: 90577347896.47581
[2026-01-09 12:42:22] 2026-01-09 17:41:47,322 | INFO     | mean x: 1767968850.1747313
[2026-01-09 12:42:22] 2026-01-09 17:41:47,322 | INFO     | mean y: 2516487.0080645164
[2026-01-09 12:42:22] 2026-01-09 17:41:47,322 | INFO     | intersect: -10029374427.98841
[2026-01-09 12:42:22] 2026-01-09 17:41:47,323 | INFO     | chi2: 7.936024937740158
[2026-01-09 12:42:22] 2026-01-09 17:41:47,323 | INFO     | current chi2=7.936024937740158 (change=7.451636156101212 %)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,323 | INFO     | right removable region: 371
[2026-01-09 12:42:22] 2026-01-09 17:41:47,323 | INFO     | sum of square deviations: 15962755012.290329
[2026-01-09 12:42:22] 2026-01-09 17:41:47,333 | INFO     | sum of deviations: -59113942512.500015
[2026-01-09 12:42:22] 2026-01-09 17:41:47,334 | INFO     | mean x: 1767969155.1774194
[2026-01-09 12:42:22] 2026-01-09 17:41:47,334 | INFO     | mean y: 2540558.9166666665
[2026-01-09 12:42:22] 2026-01-09 17:41:47,334 | INFO     | intersect: 6549757936.027556
[2026-01-09 12:42:22] 2026-01-09 17:41:47,334 | INFO     | chi2: 4.239407553753875
[2026-01-09 12:42:22] 2026-01-09 17:41:47,334 | INFO     | current chi2=4.239407553753875 (change=50.56086191191945 %)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,335 | INFO     | sum of square deviations: 15327724574.414206
[2026-01-09 12:42:22] 2026-01-09 17:41:47,345 | INFO     | sum of deviations: -150787025177.72485
[2026-01-09 12:42:22] 2026-01-09 17:41:47,346 | INFO     | mean x: 1767969307.6757493
[2026-01-09 12:42:22] 2026-01-09 17:41:47,346 | INFO     | mean y: 2562558.8174386923
[2026-01-09 12:42:22] 2026-01-09 17:41:47,346 | INFO     | intersect: 17395022295.14046
[2026-01-09 12:42:22] 2026-01-09 17:41:47,346 | INFO     | chi2: 1.9936738587138778
[2026-01-09 12:42:22] 2026-01-09 17:41:47,346 | INFO     | current chi2=1.9936738587138778 (change=52.97281911599803 %)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,347 | INFO     | sum of square deviations: 14709763982.035902
[2026-01-09 12:42:22] 2026-01-09 17:41:47,352 | INFO     | sum of deviations: -187724242433.93652
[2026-01-09 12:42:22] 2026-01-09 17:41:47,352 | INFO     | mean x: 1767969460.1740332
[2026-01-09 12:42:22] 2026-01-09 17:41:47,353 | INFO     | mean y: 2571648.5386740332
[2026-01-09 12:42:22] 2026-01-09 17:41:47,353 | INFO     | intersect: 22565185702.905766
[2026-01-09 12:42:22] 2026-01-09 17:41:47,353 | INFO     | chi2: 1.501245502288104
[2026-01-09 12:42:22] 2026-01-09 17:41:47,353 | INFO     | current chi2=1.501245502288104 (change=24.699544224522267 %)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,353 | INFO     | left removable region: 30
[2026-01-09 12:42:22] 2026-01-09 17:41:47,354 | INFO     | sum of square deviations: 12295381991.888557
[2026-01-09 12:42:22] 2026-01-09 17:41:47,360 | INFO     | sum of deviations: -163867566127.87106
[2026-01-09 12:42:22] 2026-01-09 17:41:47,360 | INFO     | mean x: 1767969734.6979473
[2026-01-09 12:42:22] 2026-01-09 17:41:47,360 | INFO     | mean y: 2578718.6129032257
[2026-01-09 12:42:22] 2026-01-09 17:41:47,360 | INFO     | intersect: 23565319396.68361
[2026-01-09 12:42:22] 2026-01-09 17:41:47,361 | INFO     | chi2: 0.6412832921329918
[2026-01-09 12:42:22] 2026-01-09 17:41:47,361 | INFO     | current memory leak: -13.33 B/s (using 341 data points, chi2=0.64)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | could have reported an average CPU frequency of 3291 MHz (16 samples)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | ..............................
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . Timing measurements:
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . get job = 1 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . initial setup = 7 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . payload setup = 79 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . stage-in = 0 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . payload execution = 22989 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . stage-out = 3 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | . log creation = 0 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,366 | INFO     | ..............................
[2026-01-09 12:42:22] 2026-01-09 17:41:47,386 | INFO     | time since job start (23180s) is within the limit (349056.0s)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,952 | INFO     | 
[2026-01-09 12:42:22] 2026-01-09 17:41:47,953 | INFO     | job summary report
[2026-01-09 12:42:22] 2026-01-09 17:41:47,953 | INFO     | --------------------------------------------------
[2026-01-09 12:42:22] 2026-01-09 17:41:47,953 | INFO     | PanDA job id: 6963193806
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | task id: 47898826
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | errors: (none)
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | pilot state: finished 
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | transexitcode: 0
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | exeerrorcode: 0
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | exeerrordiag: 
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | exitcode: 0
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | exitmsg: OK
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | cpuconsumptiontime: 46803 s
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | nevents: 400
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | neventsw: 0
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | pid: 340057
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | pgrp: 340057
[2026-01-09 12:42:22] 2026-01-09 17:41:47,954 | INFO     | corecount: 8
[2026-01-09 12:42:22] 2026-01-09 17:41:47,955 | INFO     | event service: False
[2026-01-09 12:42:22] 2026-01-09 17:41:47,955 | INFO     | sizes: {0: 2283143, 1: 2283744, 2: 2283856, 3: 2284055, 4: 2284055, 14: 2284083, 26: 2284239, 37: 2284267, 45: 2284557, 47: 2284585, 23073: 2319462, 23077: 2328460
[2026-01-09 12:42:22] 2026-01-09 17:41:47,955 | INFO     | --------------------------------------------------
[2026-01-09 12:42:22] 2026-01-09 17:41:47,955 | INFO     | 
[2026-01-09 12:42:22] 2026-01-09 17:41:47,955 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 12:42:22] 2026-01-09 17:41:48,101 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | job 6963193806 has completed (purged errors)
[2026-01-09 12:42:22] 2026-01-09 17:41:48,103 | INFO     | overall cleanup function is called
[2026-01-09 12:42:22] 2026-01-09 17:41:49,159 | INFO     | --- collectZombieJob: --- 10, [340057]
[2026-01-09 12:42:22] 2026-01-09 17:41:49,159 | INFO     | zombie collector waiting for pid 340057
[2026-01-09 12:42:22] 2026-01-09 17:41:49,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:42:22] 2026-01-09 17:41:49,159 | INFO     | collected zombie processes
[2026-01-09 12:42:22] 2026-01-09 17:41:49,160 | INFO     | will attempt to kill all subprocesses of pid=340057
[2026-01-09 12:42:22] 2026-01-09 17:41:49,621 | INFO     | PID=310144 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 12:42:22] 2026-01-09 17:41:49,622 | INFO     | .. there are 14 such processes running
[2026-01-09 12:42:22] 2026-01-09 17:41:49,811 | INFO     | process IDs to be killed: [340057] (in reverse order)
[2026-01-09 12:42:22] 2026-01-09 17:41:49,950 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:42:22] 2026-01-09 17:41:49,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:42:22] 2026-01-09 17:41:49,966 | INFO     | did not find any defunct processes belonging to 340057
[2026-01-09 12:42:22] 2026-01-09 17:41:49,982 | INFO     | did not find any defunct processes belonging to 340057
[2026-01-09 12:42:22] 2026-01-09 17:41:49,982 | INFO     | ready for new job
[2026-01-09 12:42:22] 2026-01-09 17:41:49,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:42:22] 2026-01-09 17:41:49,985 | INFO     | ***************************************
[2026-01-09 12:42:22] 2026-01-09 17:41:49,986 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:42:22] 2026-01-09 17:41:49,986 | INFO     | ***************************************
[2026-01-09 12:42:22] 2026-01-09 17:41:49,986 | INFO     | 
[2026-01-09 12:42:22] 2026-01-09 17:41:50,019 | INFO     | architecture information:
[2026-01-09 12:42:22] 2026-01-09 17:41:50,029 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:42:22] 2026-01-09 17:41:50,078 | INFO     | cat /etc/os-release:
[2026-01-09 12:42:22] NAME="CentOS Linux"
[2026-01-09 12:42:22] VERSION="7 (Core)"
[2026-01-09 12:42:22] ID="centos"
[2026-01-09 12:42:22] ID_LIKE="rhel fedora"
[2026-01-09 12:42:22] VERSION_ID="7"
[2026-01-09 12:42:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:42:22] ANSI_COLOR="0;31"
[2026-01-09 12:42:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:42:22] HOME_URL="https://www.centos.org/"
[2026-01-09 12:42:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:42:22] 
[2026-01-09 12:42:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:42:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:42:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:42:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:42:22] 
[2026-01-09 12:42:22] 2026-01-09 17:41:50,078 | INFO     | ***************************************
[2026-01-09 12:42:22] 2026-01-09 17:41:50,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 12:42:22] 2026-01-09 17:41:50,627 | INFO     | sufficient remaining disk space (95251595264 B)
[2026-01-09 12:42:22] 2026-01-09 17:41:50,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:42:22] 2026-01-09 17:41:50,628 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:42:22] 2026-01-09 17:41:50,628 | INFO     | update_server=False
[2026-01-09 12:42:22] 2026-01-09 17:41:50,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:42:22] 2026-01-09 17:41:50,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:42:22] 2026-01-09 17:41:50,630 | INFO     | aborting loop
[2026-01-09 12:42:22] 2026-01-09 17:41:51,567 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:42:22] 2026-01-09 17:41:51,634 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:51,635 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:51,705 | INFO     | all data control threads have been joined
[2026-01-09 12:42:22] 2026-01-09 17:41:51,790 | INFO     | all job control threads have been joined
[2026-01-09 12:42:22] 2026-01-09 17:41:52,021 | INFO     | all payload control threads have been joined
[2026-01-09 12:42:22] 2026-01-09 17:41:52,423 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,628 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,633 | INFO     | [job] validate thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,666 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:42:22] 2026-01-09 17:41:52,711 | INFO     | [data] control thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,796 | INFO     | [job] control thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,854 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:52,922 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:53,027 | INFO     | [payload] control thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:53,040 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:53,574 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:53,696 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:41:53,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:42:22] 2026-01-09 17:41:57,776 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:42:01,513 | INFO     | job.realtimelogging is not enabled
[2026-01-09 12:42:22] 2026-01-09 17:42:02,519 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:42:22] 2026-01-09 17:42:06,258 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:42:22] 2026-01-09 17:42:06,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252673709888)>', '<ExcThread(monitor, started 140251913758464)>']
[2026-01-09 12:42:22] 2026-01-09 17:42:11,532 | INFO     | all workflow threads have been joined
[2026-01-09 12:42:22] 2026-01-09 17:42:11,532 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:42:22] 2026-01-09 17:42:11,533 | INFO     | traces error code: 0
[2026-01-09 12:42:22] 2026-01-09 17:42:11,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:42:22] 2026-01-09 17:42:22,175 | INFO     | PID=310144 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 12:42:22] 2026-01-09 17:42:22,175 | INFO     | .. there are 13 such processes running
[2026-01-09 12:42:22] 2026-01-09 17:42:22,176 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:42:22] 2026-01-09 17:42:22,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:42:22] 2026-01-09 17:42:22,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:42:22] 2026-01-09 17:42:22,176 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:42:22] 2026-01-09 17:42:22,177 | INFO     | [monitor] control thread has ended
[2026-01-09 12:42:22] 2026-01-09 17:42:22,291 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:42:22] 2026-01-09 17:42:22,297 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:42:22] 2026-01-09 17:42:22,301 [wrapper] pilotpid: 310144
[2026-01-09 12:42:22] 2026-01-09 17:42:22,304 [wrapper] Pilot exit status: 0
[2026-01-09 12:42:22] 2026-01-09 17:42:22,328 [wrapper] pandaids: 6963193806
[2026-01-09 12:42:22] 2026-01-09 17:42:22,421 [wrapper] cleanup supervisor_pilot 1855993 310145
[2026-01-09 12:42:22] 2026-01-09 17:42:22,425 [wrapper] Test setup, not cleaning
[2026-01-09 12:42:22] 2026-01-09 17:42:22,428 [wrapper] apfmon messages muted
[2026-01-09 12:42:22] 2026-01-09 17:42:22,431 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:42:22] 2026-01-09 17:42:22,434 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:42:22]  *** Error codes and diagnostics ***
[2026-01-09 12:42:22]     "exeErrorCode": 0,
[2026-01-09 12:42:22]     "exeErrorDiag": "",
[2026-01-09 12:42:22]     "pilotErrorCode": 0,
[2026-01-09 12:42:22]     "pilotErrorDiag": "",
[2026-01-09 12:42:22]  *** Listing of results directory ***
[2026-01-09 12:42:22] total 447004
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 12:42:22] -rwx------. 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas       100 Jan  9 06:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:42:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 06:13 run_atlas
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas       105 Jan  9 06:13 job.xml
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas 224093555 Jan  9 06:13 EVNT.47898824._001510.pool.root.1
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:13 start_atlas.sh
[2026-01-09 12:42:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 06:13 shared
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 06:13 input.tar.gz
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas         0 Jan  9 06:13 boinc_lockfile
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 06:13 pandaJob.out
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas        57 Jan  9 06:13 setup.sh.local
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas    989369 Jan  9 06:15 agis_schedconf.cvmfs.json
[2026-01-09 12:42:22] drwx------. 5 boincer umatlas      4096 Jan  9 06:15 pilot3
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas      6903 Jan  9 12:40 init_data.xml
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas 222825300 Jan  9 12:40 HITS.47898826._039279.pool.root.1
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas       531 Jan  9 12:41 boinc_task_state.xml
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas      1034 Jan  9 12:41 memory_monitor_summary.json
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas    557519 Jan  9 12:41 log.47898826._039279.job.log.tgz.1
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas      7783 Jan  9 12:41 heartbeat.json
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas        28 Jan  9 12:42 wrapper_checkpoint.txt
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 12:42 boinc_mmap_file
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas       822 Jan  9 12:42 pilotlog.txt
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas        95 Jan  9 12:42 pilot_heartbeat.json
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas   2890234 Jan  9 12:42 log.47898826._039279.job.log.1
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas       357 Jan  9 12:42 output.list
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas       620 Jan  9 12:42 runtime_log
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas   3471360 Jan  9 12:42 result.tar.gz
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 12:42 runtime_log.err
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas       657 Jan  9 12:42 JoaNDm4CJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9EmKDmEgXHQm.diag
[2026-01-09 12:42:22] -rw-r--r--. 1 boincer umatlas     21279 Jan  9 12:42 stderr.txt
[2026-01-09 12:42:22] HITS file was successfully produced:
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas 222825300 Jan  9 12:40 shared/HITS.pool.root.1
[2026-01-09 12:42:22]  *** Contents of shared directory: ***
[2026-01-09 12:42:22] total 440440
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas 224093555 Jan  9 06:13 ATLAS.root_0
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:13 start_atlas.sh
[2026-01-09 12:42:22] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 06:13 input.tar.gz
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas 222825300 Jan  9 12:40 HITS.pool.root.1
[2026-01-09 12:42:22] -rw-------. 1 boincer umatlas   3471360 Jan  9 12:42 result.tar.gz
12:42:24 (296256): run_atlas exited; CPU time 47300.097187
12:42:24 (296256): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN