Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:18:39 (4067644): wrapper (7.7.26015): starting
06:18:39 (4067644): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:18:39] Arguments: --nthreads 8
[2026-01-09 06:18:39] Threads: 8
[2026-01-09 06:18:39] Checking for CVMFS
[2026-01-09 06:18:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:18:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:18:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:18:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:18:41] 2.13.3.0 11900 93341 426968 154941 1 417 31835997 32935937 24719 16776704 0 394898032 99.480 506614567 32816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 06:18:41] CVMFS is ok
[2026-01-09 06:18:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:18:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:18:41] Further information can be found at the LHC@home message board.
[2026-01-09 06:18:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:18:41] Checking for apptainer binary...
[2026-01-09 06:18:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:18:41] Running /usr/bin/apptainer --version
[2026-01-09 06:18:41] apptainer version 1.4.5-2.el9
[2026-01-09 06:18:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:18:41] c6-12-27-1.aglt2.org
[2026-01-09 06:18:41] apptainer works
[2026-01-09 06:18:41] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:18:41] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:18:41] Starting ATLAS job with PandaID=6963161513
[2026-01-09 06:18:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:26:16]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:26:16] 2026-01-09 16:25:40,757 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2692.9031145833337
[2026-01-09 11:26:16] 2026-01-09 16:25:40,865 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963161513/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:26:16] 2026-01-09 16:25:40,888 | INFO     | extracted standard info from prmon json
[2026-01-09 11:26:16] 2026-01-09 16:25:40,889 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:26:16] 2026-01-09 16:25:40,889 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:26:16] 2026-01-09 16:25:40,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:26:16] 2026-01-09 16:25:40,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:26:16] 2026-01-09 16:25:40,909 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:26:16] 2026-01-09 16:25:40,910 | INFO     | sum of square deviations: 8288085351.959863
[2026-01-09 11:26:16] 2026-01-09 16:25:40,925 | INFO     | sum of deviations: -50990267317.14046
[2026-01-09 11:26:16] 2026-01-09 16:25:40,925 | INFO     | mean x: 1767966768.277592
[2026-01-09 11:26:16] 2026-01-09 16:25:40,925 | INFO     | mean y: 2518830.4715719065
[2026-01-09 11:26:16] 2026-01-09 16:25:40,925 | INFO     | intersect: 10879469814.208485
[2026-01-09 11:26:16] 2026-01-09 16:25:40,926 | INFO     | chi2: 3.5190174137398804
[2026-01-09 11:26:16] 2026-01-09 16:25:40,926 | INFO     | sum of square deviations: 7879200674.068043
[2026-01-09 11:26:16] 2026-01-09 16:25:40,934 | INFO     | sum of deviations: -10856936302.755102
[2026-01-09 11:26:16] 2026-01-09 16:25:40,937 | INFO     | mean x: 1767966615.7823129
[2026-01-09 11:26:16] 2026-01-09 16:25:40,937 | INFO     | mean y: 2533651.8163265307
[2026-01-09 11:26:16] 2026-01-09 16:25:40,937 | INFO     | intersect: 2438656518.456785
[2026-01-09 11:26:16] 2026-01-09 16:25:40,958 | INFO     | chi2: 2.014544780019679
[2026-01-09 11:26:16] 2026-01-09 16:25:40,959 | INFO     | current chi2=2.014544780019679 (change=42.75263395532061 %)
[2026-01-09 11:26:16] 2026-01-09 16:25:40,959 | INFO     | sum of square deviations: 7483972858.733583
[2026-01-09 11:26:16] 2026-01-09 16:25:40,961 | INFO     | sum of deviations: -10579404467.204155
[2026-01-09 11:26:16] 2026-01-09 16:25:40,961 | INFO     | mean x: 1767966463.283737
[2026-01-09 11:26:16] 2026-01-09 16:25:40,961 | INFO     | mean y: 2533758.892733564
[2026-01-09 11:26:16] 2026-01-09 16:25:40,961 | INFO     | intersect: 2501745427.9601893
[2026-01-09 11:26:16] 2026-01-09 16:25:40,962 | INFO     | chi2: 2.014201103596904
[2026-01-09 11:26:16] 2026-01-09 16:25:40,986 | INFO     | current chi2=2.014201103596904 (change=0.0170597559400864 %)
[2026-01-09 11:26:16] 2026-01-09 16:25:40,986 | INFO     | right removable region: 288
[2026-01-09 11:26:16] 2026-01-09 16:25:40,987 | INFO     | sum of square deviations: 7879150044.068043
[2026-01-09 11:26:16] 2026-01-09 16:25:41,004 | INFO     | sum of deviations: -107037449463.59866
[2026-01-09 11:26:16] 2026-01-09 16:25:41,005 | INFO     | mean x: 1767966920.7823129
[2026-01-09 11:26:16] 2026-01-09 16:25:41,005 | INFO     | mean y: 2539601.1156462585
[2026-01-09 11:26:16] 2026-01-09 16:25:41,005 | INFO     | intersect: 24020189839.801304
[2026-01-09 11:26:16] 2026-01-09 16:25:41,005 | INFO     | chi2: 1.7166928900269827
[2026-01-09 11:26:16] 2026-01-09 16:25:41,006 | INFO     | current chi2=1.7166928900269827 (change=51.216698066789455 %)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,006 | INFO     | sum of square deviations: 7483889411.162668
[2026-01-09 11:26:16] 2026-01-09 16:25:41,024 | INFO     | sum of deviations: -111380675848.07614
[2026-01-09 11:26:16] 2026-01-09 16:25:41,024 | INFO     | mean x: 1767967073.287197
[2026-01-09 11:26:16] 2026-01-09 16:25:41,024 | INFO     | mean y: 2541280.8442906574
[2026-01-09 11:26:16] 2026-01-09 16:25:41,024 | INFO     | intersect: 26314710886.953003
[2026-01-09 11:26:16] 2026-01-09 16:25:41,025 | INFO     | chi2: 1.686929829021051
[2026-01-09 11:26:16] 2026-01-09 16:25:41,025 | INFO     | current chi2=1.686929829021051 (change=1.733744059804652 %)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,025 | INFO     | left removable region: 20
[2026-01-09 11:26:16] 2026-01-09 16:25:41,025 | INFO     | sum of square deviations: 5968019765.712659
[2026-01-09 11:26:16] 2026-01-09 16:25:41,027 | INFO     | sum of deviations: -65708397881.936516
[2026-01-09 11:26:16] 2026-01-09 16:25:41,027 | INFO     | mean x: 1767967042.7947762
[2026-01-09 11:26:16] 2026-01-09 16:25:41,027 | INFO     | mean y: 2555708.473880597
[2026-01-09 11:26:16] 2026-01-09 16:25:41,027 | INFO     | intersect: 19468021047.166103
[2026-01-09 11:26:16] 2026-01-09 16:25:41,028 | INFO     | chi2: 0.12744794246308522
[2026-01-09 11:26:16] 2026-01-09 16:25:41,028 | INFO     | current memory leak: -11.01 B/s (using 268 data points, chi2=0.13)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | could have reported an average CPU frequency of 2703 MHz (14 samples)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | ..............................
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . Timing measurements:
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . get job = 0 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . initial setup = 3 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . payload setup = 29 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . stage-in = 0 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . payload execution = 18260 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . stage-out = 5 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | . log creation = 0 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,029 | INFO     | ..............................
[2026-01-09 11:26:16] 2026-01-09 16:25:41,416 | INFO     | 
[2026-01-09 11:26:16] 2026-01-09 16:25:41,417 | INFO     | job summary report
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | --------------------------------------------------
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | PanDA job id: 6963161513
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | task id: 47898826
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | errors: (none)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | pilot state: finished 
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | transexitcode: 0
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | exeerrorcode: 0
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | exeerrordiag: 
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | exitcode: 0
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | exitmsg: OK
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | cpuconsumptiontime: 60257 s
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | nevents: 400
[2026-01-09 11:26:16] 2026-01-09 16:25:41,418 | INFO     | neventsw: 0
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | pid: 4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | pgrp: 4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | corecount: 8
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | event service: False
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | sizes: {0: 2283741, 1: 2283825, 2: 2284024, 13: 2284024, 24: 2284080, 25: 2284370, 35: 2284526, 18295: 2316786, 18302: 2325784, 18305: 2325840, 18318: 2326034}
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | --------------------------------------------------
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | 
[2026-01-09 11:26:16] 2026-01-09 16:25:41,419 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 11:26:16] 2026-01-09 16:25:41,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | job 6963161513 has completed (purged errors)
[2026-01-09 11:26:16] 2026-01-09 16:25:41,577 | INFO     | overall cleanup function is called
[2026-01-09 11:26:16] 2026-01-09 16:25:42,595 | INFO     | --- collectZombieJob: --- 10, [4082862]
[2026-01-09 11:26:16] 2026-01-09 16:25:42,595 | INFO     | zombie collector waiting for pid 4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:42,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:26:16] 2026-01-09 16:25:42,596 | INFO     | collected zombie processes
[2026-01-09 11:26:16] 2026-01-09 16:25:42,596 | INFO     | will attempt to kill all subprocesses of pid=4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:42,798 | INFO     | PID=4072022 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 11:26:16] 2026-01-09 16:25:42,798 | INFO     | .. there are 22 such processes running
[2026-01-09 11:26:16] 2026-01-09 16:25:43,507 | INFO     | process IDs to be killed: [4082862] (in reverse order)
[2026-01-09 11:26:16] 2026-01-09 16:25:43,651 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:26:16] 2026-01-09 16:25:43,652 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:26:16] 2026-01-09 16:25:43,670 | INFO     | did not find any defunct processes belonging to 4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:43,695 | INFO     | did not find any defunct processes belonging to 4082862
[2026-01-09 11:26:16] 2026-01-09 16:25:43,695 | INFO     | ready for new job
[2026-01-09 11:26:16] 2026-01-09 16:25:43,695 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:26:16] 2026-01-09 16:25:43,702 | INFO     | ***************************************
[2026-01-09 11:26:16] 2026-01-09 16:25:43,702 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:26:16] 2026-01-09 16:25:43,702 | INFO     | ***************************************
[2026-01-09 11:26:16] 2026-01-09 16:25:43,703 | INFO     | 
[2026-01-09 11:26:16] 2026-01-09 16:25:43,718 | INFO     | architecture information:
[2026-01-09 11:26:16] 2026-01-09 16:25:43,719 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:26:16] 2026-01-09 16:25:43,745 | INFO     | cat /etc/os-release:
[2026-01-09 11:26:16] NAME="CentOS Linux"
[2026-01-09 11:26:16] VERSION="7 (Core)"
[2026-01-09 11:26:16] ID="centos"
[2026-01-09 11:26:16] ID_LIKE="rhel fedora"
[2026-01-09 11:26:16] VERSION_ID="7"
[2026-01-09 11:26:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:26:16] ANSI_COLOR="0;31"
[2026-01-09 11:26:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:26:16] HOME_URL="https://www.centos.org/"
[2026-01-09 11:26:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:26:16] 
[2026-01-09 11:26:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:26:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:26:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:26:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:26:16] 
[2026-01-09 11:26:16] 2026-01-09 16:25:43,746 | INFO     | ***************************************
[2026-01-09 11:26:16] 2026-01-09 16:25:44,249 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 11:26:16] 2026-01-09 16:25:44,284 | INFO     | sufficient remaining disk space (94157930496 B)
[2026-01-09 11:26:16] 2026-01-09 16:25:44,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:26:16] 2026-01-09 16:25:44,284 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:26:16] 2026-01-09 16:25:44,284 | INFO     | update_server=False
[2026-01-09 11:26:16] 2026-01-09 16:25:44,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:26:16] 2026-01-09 16:25:44,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:26:16] 2026-01-09 16:25:44,285 | INFO     | aborting loop
[2026-01-09 11:26:16] 2026-01-09 16:25:44,631 | INFO     | all job control threads have been joined
[2026-01-09 11:26:16] 2026-01-09 16:25:45,042 | INFO     | all data control threads have been joined
[2026-01-09 11:26:16] 2026-01-09 16:25:45,240 | INFO     | all payload control threads have been joined
[2026-01-09 11:26:16] 2026-01-09 16:25:45,290 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:45,314 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:45,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:26:16] 2026-01-09 16:25:45,637 | INFO     | [job] control thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:45,663 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:45,671 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,048 | INFO     | [data] control thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,124 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,134 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,203 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,213 | INFO     | [job] validate thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,246 | INFO     | [payload] control thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,363 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:46,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:26:16] 2026-01-09 16:25:47,364 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:47,437 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:47,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:26:16] 2026-01-09 16:25:51,617 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:26:16] 2026-01-09 16:25:58,918 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:26:16] 2026-01-09 16:26:00,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625797166912)>', '<ExcThread(monitor, started 139625452513024)>']
[2026-01-09 11:26:16] 2026-01-09 16:26:05,277 | INFO     | all workflow threads have been joined
[2026-01-09 11:26:16] 2026-01-09 16:26:05,277 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:26:16] 2026-01-09 16:26:05,278 | INFO     | traces error code: 0
[2026-01-09 11:26:16] 2026-01-09 16:26:05,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:26:16] 2026-01-09 16:26:15,717 | INFO     | PID=4072022 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | INFO     | .. there are 22 such processes running
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 11:26:16] 2026-01-09 16:26:15,718 | INFO     | [monitor] control thread has ended
[2026-01-09 11:26:16] 2026-01-09 16:26:15,985 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:26:16] 2026-01-09 16:26:15,995 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:26:16] 2026-01-09 16:26:16,005 [wrapper] pilotpid: 4072022
[2026-01-09 11:26:16] 2026-01-09 16:26:16,015 [wrapper] Pilot exit status: 0
[2026-01-09 11:26:16] 2026-01-09 16:26:16,040 [wrapper] pandaids: 6963161513
[2026-01-09 11:26:16] 2026-01-09 16:26:16,125 [wrapper] cleanup supervisor_pilot  870566 4072023
[2026-01-09 11:26:16] 2026-01-09 16:26:16,128 [wrapper] Test setup, not cleaning
[2026-01-09 11:26:16] 2026-01-09 16:26:16,130 [wrapper] apfmon messages muted
[2026-01-09 11:26:16] 2026-01-09 16:26:16,132 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:26:16] 2026-01-09 16:26:16,135 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:26:16]  *** Error codes and diagnostics ***
[2026-01-09 11:26:16]     "exeErrorCode": 0,
[2026-01-09 11:26:16]     "exeErrorDiag": "",
[2026-01-09 11:26:16]     "pilotErrorCode": 0,
[2026-01-09 11:26:16]     "pilotErrorDiag": "",
[2026-01-09 11:26:16]  *** Listing of results directory ***
[2026-01-09 11:26:16] total 451204
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 11:26:16] -rwx------. 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas       100 Jan  9 06:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:26:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 06:18 run_atlas
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas       105 Jan  9 06:18 job.xml
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas 229027251 Jan  9 06:18 EVNT.47898824._001283.pool.root.1
[2026-01-09 11:26:16] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 06:18 shared
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 06:18 input.tar.gz
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:18 start_atlas.sh
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas         0 Jan  9 06:18 boinc_lockfile
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 06:18 pandaJob.out
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas        57 Jan  9 06:18 setup.sh.local
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas    989369 Jan  9 06:19 agis_schedconf.cvmfs.json
[2026-01-09 11:26:16] drwx------. 5 boincer umatlas      4096 Jan  9 06:19 pilot3
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas      6879 Jan  9 11:21 init_data.xml
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas 223638013 Jan  9 11:23 HITS.47898826._033175.pool.root.1
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas       531 Jan  9 11:23 boinc_task_state.xml
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas      1044 Jan  9 11:25 memory_monitor_summary.json
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas        95 Jan  9 11:25 pilot_heartbeat.json
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas   1516240 Jan  9 11:25 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas    484596 Jan  9 11:25 log.47898826._033175.job.log.tgz.1
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas      7839 Jan  9 11:25 heartbeat.json
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 11:25 boinc_mmap_file
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas        28 Jan  9 11:26 wrapper_checkpoint.txt
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas       893 Jan  9 11:26 pilotlog.txt
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas   2242298 Jan  9 11:26 log.47898826._033175.job.log.1
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas       357 Jan  9 11:26 output.list
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas       620 Jan  9 11:26 runtime_log
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas   2744320 Jan  9 11:26 result.tar.gz
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 11:26 runtime_log.err
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas       657 Jan  9 11:26 abfKDmG1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdIgKDmzDnwbn.diag
[2026-01-09 11:26:16] -rw-r--r--. 1 boincer umatlas     21305 Jan  9 11:26 stderr.txt
[2026-01-09 11:26:16] HITS file was successfully produced:
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas 223638013 Jan  9 11:23 shared/HITS.pool.root.1
[2026-01-09 11:26:16]  *** Contents of shared directory: ***
[2026-01-09 11:26:16] total 445344
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas 229027251 Jan  9 06:18 ATLAS.root_0
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 06:18 input.tar.gz
[2026-01-09 11:26:16] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:18 start_atlas.sh
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas 223638013 Jan  9 11:23 HITS.pool.root.1
[2026-01-09 11:26:16] -rw-------. 1 boincer umatlas   2744320 Jan  9 11:26 result.tar.gz
11:26:18 (4067644): run_atlas exited; CPU time 61062.200251
11:26:18 (4067644): called boinc_finish(0)

</stderr_txt>
]]>

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