Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:03:43 (1146253): wrapper (7.7.26015): starting
06:03:43 (1146253): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:03:43] Arguments: --nthreads 8
[2026-01-09 06:03:43] Threads: 8
[2026-01-09 06:03:43] Checking for CVMFS
[2026-01-09 06:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:03:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:03:45] 2.13.3.0 12468 93328 435444 154940 3 749 18191632 32947200 19862 16776704 0 332841516 99.422 498406343 34082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 06:03:45] CVMFS is ok
[2026-01-09 06:03:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:03:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:03:45] Further information can be found at the LHC@home message board.
[2026-01-09 06:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:03:45] Checking for apptainer binary...
[2026-01-09 06:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:03:45] Running /usr/bin/apptainer --version
[2026-01-09 06:03:45] apptainer version 1.4.5-2.el9
[2026-01-09 06:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:03:45] c6-6-8-1.aglt2.org
[2026-01-09 06:03:45] apptainer works
[2026-01-09 06:03:46] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:03:46] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:03:46] Starting ATLAS job with PandaID=6963189445
[2026-01-09 06:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:17:01]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:17:01] 2026-01-09 18:16:19,677 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 13:17:01] 2026-01-09 18:16:19,724 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2622.1604374999993
[2026-01-09 13:17:01] 2026-01-09 18:16:19,904 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963189445/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:17:01] 2026-01-09 18:16:19,905 | INFO     | extracted standard info from prmon json
[2026-01-09 13:17:01] 2026-01-09 18:16:19,905 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:17:01] 2026-01-09 18:16:19,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:17:01] 2026-01-09 18:16:19,906 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:17:01] 2026-01-09 18:16:19,906 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:17:01] 2026-01-09 18:16:20,011 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:17:01] 2026-01-09 18:16:20,012 | INFO     | sum of square deviations: 23635975965.375
[2026-01-09 13:17:01] 2026-01-09 18:16:20,038 | INFO     | sum of deviations: 299178078213.0
[2026-01-09 13:17:01] 2026-01-09 18:16:20,060 | INFO     | mean x: 1767969606.625
[2026-01-09 13:17:01] 2026-01-09 18:16:20,060 | INFO     | mean y: 2448385.433962264
[2026-01-09 13:17:01] 2026-01-09 18:16:20,061 | INFO     | intersect: -22376054199.943375
[2026-01-09 13:17:01] 2026-01-09 18:16:20,061 | INFO     | chi2: 6.708557912453422
[2026-01-09 13:17:01] 2026-01-09 18:16:20,062 | INFO     | sum of square deviations: 22809606463.546623
[2026-01-09 13:17:01] 2026-01-09 18:16:20,090 | INFO     | sum of deviations: 323400371405.8665
[2026-01-09 13:17:01] 2026-01-09 18:16:20,090 | INFO     | mean x: 1767969454.124105
[2026-01-09 13:17:01] 2026-01-09 18:16:20,146 | INFO     | mean y: 2452805.3102625296
[2026-01-09 13:17:01] 2026-01-09 18:16:20,147 | INFO     | intersect: -25064265422.01774
[2026-01-09 13:17:01] 2026-01-09 18:16:20,147 | INFO     | chi2: 5.943140483918977
[2026-01-09 13:17:01] 2026-01-09 18:16:20,147 | INFO     | current chi2=5.943140483918977 (change=11.409567279930059 %)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,148 | INFO     | right removable region: 418
[2026-01-09 13:17:01] 2026-01-09 18:16:20,148 | INFO     | sum of square deviations: 22809600120.296066
[2026-01-09 13:17:01] 2026-01-09 18:16:20,200 | INFO     | sum of deviations: 173269791309.067
[2026-01-09 13:17:01] 2026-01-09 18:16:20,200 | INFO     | mean x: 1767969759.1264915
[2026-01-09 13:17:01] 2026-01-09 18:16:20,200 | INFO     | mean y: 2471600.093078759
[2026-01-09 13:17:01] 2026-01-09 18:16:20,200 | INFO     | intersect: -13427652101.725348
[2026-01-09 13:17:01] 2026-01-09 18:16:20,201 | INFO     | chi2: 3.3258490748587635
[2026-01-09 13:17:01] 2026-01-09 18:16:20,201 | INFO     | current chi2=3.3258490748587635 (change=50.423785286479706 %)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,250 | INFO     | sum of square deviations: 22002713012.715267
[2026-01-09 13:17:01] 2026-01-09 18:16:20,274 | INFO     | sum of deviations: 84513640059.25587
[2026-01-09 13:17:01] 2026-01-09 18:16:20,275 | INFO     | mean x: 1767969911.6280193
[2026-01-09 13:17:01] 2026-01-09 18:16:20,275 | INFO     | mean y: 2488359.495169082
[2026-01-09 13:17:01] 2026-01-09 18:16:20,275 | INFO     | intersect: -6788382050.920907
[2026-01-09 13:17:01] 2026-01-09 18:16:20,276 | INFO     | chi2: 1.7205811041666257
[2026-01-09 13:17:01] 2026-01-09 18:16:20,276 | INFO     | current chi2=1.7205811041666257 (change=48.26641060855438 %)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,276 | INFO     | sum of square deviations: 21215132828.640434
[2026-01-09 13:17:01] 2026-01-09 18:16:20,332 | INFO     | sum of deviations: 44239465093.04898
[2026-01-09 13:17:01] 2026-01-09 18:16:20,332 | INFO     | mean x: 1767970064.1246943
[2026-01-09 13:17:01] 2026-01-09 18:16:20,382 | INFO     | mean y: 2496160.391198044
[2026-01-09 13:17:01] 2026-01-09 18:16:20,383 | INFO     | intersect: -3684214197.2178283
[2026-01-09 13:17:01] 2026-01-09 18:16:20,383 | INFO     | chi2: 1.4009676847016217
[2026-01-09 13:17:01] 2026-01-09 18:16:20,383 | INFO     | current chi2=1.4009676847016217 (change=18.57589965919164 %)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,383 | INFO     | left removable region: 30
[2026-01-09 13:17:01] 2026-01-09 18:16:20,384 | INFO     | sum of square deviations: 18112152129.306625
[2026-01-09 13:17:01] 2026-01-09 18:16:20,410 | INFO     | sum of deviations: -5490856588.77834
[2026-01-09 13:17:01] 2026-01-09 18:16:20,410 | INFO     | mean x: 1767970338.621134
[2026-01-09 13:17:01] 2026-01-09 18:16:20,410 | INFO     | mean y: 2517036.31443299
[2026-01-09 13:17:01] 2026-01-09 18:16:20,410 | INFO     | intersect: 538492635.0879709
[2026-01-09 13:17:01] 2026-01-09 18:16:20,411 | INFO     | chi2: 0.13152251070481777
[2026-01-09 13:17:01] 2026-01-09 18:16:20,411 | INFO     | current memory leak: -0.30 B/s (using 388 data points, chi2=0.13)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,433 | INFO     | could have reported an average CPU frequency of 2646 MHz (18 samples)
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | ..............................
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . Timing measurements:
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . get job = 0 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . initial setup = 3 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . payload setup = 14 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . stage-in = 0 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . payload execution = 25844 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . stage-out = 6 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | . log creation = 1 s
[2026-01-09 13:17:01] 2026-01-09 18:16:20,434 | INFO     | ..............................
[2026-01-09 13:17:01] 2026-01-09 18:16:21,706 | INFO     | 
[2026-01-09 13:17:01] 2026-01-09 18:16:21,707 | INFO     | job summary report
[2026-01-09 13:17:01] 2026-01-09 18:16:21,707 | INFO     | --------------------------------------------------
[2026-01-09 13:17:01] 2026-01-09 18:16:21,707 | INFO     | PanDA job id: 6963189445
[2026-01-09 13:17:01] 2026-01-09 18:16:21,707 | INFO     | task id: 47898826
[2026-01-09 13:17:01] 2026-01-09 18:16:21,712 | INFO     | errors: (none)
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | pilot state: finished 
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | transexitcode: 0
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | exeerrorcode: 0
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | exeerrordiag: 
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | exitcode: 0
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | exitmsg: OK
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | cpuconsumptiontime: 60184 s
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | nevents: 400
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | neventsw: 0
[2026-01-09 13:17:01] 2026-01-09 18:16:21,713 | INFO     | pid: 1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | pgrp: 1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | corecount: 8
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | event service: False
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | sizes: {0: 2283143, 1: 2283999, 2: 2283999, 12: 2284289, 13: 2284317, 25864: 2320932, 25873: 2329986, 25909: 2330124}
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | --------------------------------------------------
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | 
[2026-01-09 13:17:01] 2026-01-09 18:16:21,714 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-09 13:17:01] 2026-01-09 18:16:21,844 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,845 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,846 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:17:01] 2026-01-09 18:16:21,847 | INFO     | job 6963189445 has completed (purged errors)
[2026-01-09 13:17:01] 2026-01-09 18:16:21,847 | INFO     | overall cleanup function is called
[2026-01-09 13:17:01] 2026-01-09 18:16:22,101 | INFO     | PID=1150731 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:17:01] 2026-01-09 18:16:22,101 | INFO     | .. there are 16 such processes running
[2026-01-09 13:17:01] 2026-01-09 18:16:22,875 | INFO     | --- collectZombieJob: --- 10, [1157549]
[2026-01-09 13:17:01] 2026-01-09 18:16:22,877 | INFO     | zombie collector waiting for pid 1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:22,877 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:17:01] 2026-01-09 18:16:22,878 | INFO     | collected zombie processes
[2026-01-09 13:17:01] 2026-01-09 18:16:22,878 | INFO     | will attempt to kill all subprocesses of pid=1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:24,995 | INFO     | process IDs to be killed: [1157549] (in reverse order)
[2026-01-09 13:17:01] 2026-01-09 18:16:25,758 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:17:01] 2026-01-09 18:16:25,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:17:01] 2026-01-09 18:16:25,845 | INFO     | did not find any defunct processes belonging to 1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:25,905 | INFO     | did not find any defunct processes belonging to 1157549
[2026-01-09 13:17:01] 2026-01-09 18:16:25,906 | INFO     | ready for new job
[2026-01-09 13:17:01] 2026-01-09 18:16:25,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:17:01] 2026-01-09 18:16:25,928 | INFO     | ***************************************
[2026-01-09 13:17:01] 2026-01-09 18:16:25,928 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:17:01] 2026-01-09 18:16:25,928 | INFO     | ***************************************
[2026-01-09 13:17:01] 2026-01-09 18:16:25,928 | INFO     | 
[2026-01-09 13:17:01] 2026-01-09 18:16:25,977 | INFO     | architecture information:
[2026-01-09 13:17:01] 2026-01-09 18:16:25,980 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:17:01] 2026-01-09 18:16:26,051 | INFO     | cat /etc/os-release:
[2026-01-09 13:17:01] NAME="CentOS Linux"
[2026-01-09 13:17:01] VERSION="7 (Core)"
[2026-01-09 13:17:01] ID="centos"
[2026-01-09 13:17:01] ID_LIKE="rhel fedora"
[2026-01-09 13:17:01] VERSION_ID="7"
[2026-01-09 13:17:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:17:01] ANSI_COLOR="0;31"
[2026-01-09 13:17:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:17:01] HOME_URL="https://www.centos.org/"
[2026-01-09 13:17:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:17:01] 
[2026-01-09 13:17:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:17:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:17:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:17:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:17:01] 
[2026-01-09 13:17:01] 2026-01-09 18:16:26,052 | INFO     | ***************************************
[2026-01-09 13:17:01] 2026-01-09 18:16:26,555 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | INFO     | sufficient remaining disk space (75009884160 B)
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | INFO     | update_server=False
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:17:01] 2026-01-09 18:16:26,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:17:01] 2026-01-09 18:16:26,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:17:01] 2026-01-09 18:16:26,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:17:01] 2026-01-09 18:16:26,727 | INFO     | aborting loop
[2026-01-09 13:17:01] 2026-01-09 18:16:27,017 | INFO     | all data control threads have been joined
[2026-01-09 13:17:01] 2026-01-09 18:16:27,326 | INFO     | all job control threads have been joined
[2026-01-09 13:17:01] 2026-01-09 18:16:27,427 | INFO     | all payload control threads have been joined
[2026-01-09 13:17:01] 2026-01-09 18:16:27,689 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,710 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,733 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,751 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,780 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,915 | INFO     | [job] validate thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,916 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:27,921 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,023 | INFO     | [data] control thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:17:01] 2026-01-09 18:16:28,297 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,332 | INFO     | [job] control thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,417 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,433 | INFO     | [payload] control thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,672 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:28,690 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:32,181 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:17:01] 2026-01-09 18:16:53,452 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:17:01] 2026-01-09 18:16:54,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650192598848)>', '<ExcThread(monitor, started 140649567348480)>']
[2026-01-09 13:17:01] 2026-01-09 18:16:58,063 | INFO     | PID=1150731 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | INFO     | .. there are 16 such processes running
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:17:01] 2026-01-09 18:16:58,064 | INFO     | [monitor] control thread has ended
[2026-01-09 13:17:01] 2026-01-09 18:16:59,984 | INFO     | all workflow threads have been joined
[2026-01-09 13:17:01] 2026-01-09 18:16:59,984 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:17:01] 2026-01-09 18:16:59,985 | INFO     | traces error code: 0
[2026-01-09 13:17:01] 2026-01-09 18:16:59,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:17:01] 2026-01-09 18:17:00,810 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:17:01] 2026-01-09 18:17:00,828 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:17:01] 2026-01-09 18:17:00,853 [wrapper] pilotpid: 1150731
[2026-01-09 13:17:01] 2026-01-09 18:17:00,870 [wrapper] Pilot exit status: 0
[2026-01-09 13:17:01] 2026-01-09 18:17:00,999 [wrapper] pandaids: 6963189445
[2026-01-09 13:17:01] 2026-01-09 18:17:01,239 [wrapper] cleanup supervisor_pilot 2314576 1150732
[2026-01-09 13:17:01] 2026-01-09 18:17:01,265 [wrapper] Test setup, not cleaning
[2026-01-09 13:17:01] 2026-01-09 18:17:01,350 [wrapper] apfmon messages muted
[2026-01-09 13:17:01] 2026-01-09 18:17:01,381 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:17:01] 2026-01-09 18:17:01,400 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:17:01]  *** Error codes and diagnostics ***
[2026-01-09 13:17:01]     "exeErrorCode": 0,
[2026-01-09 13:17:01]     "exeErrorDiag": "",
[2026-01-09 13:17:01]     "pilotErrorCode": 0,
[2026-01-09 13:17:01]     "pilotErrorDiag": "",
[2026-01-09 13:17:01]  *** Listing of results directory ***
[2026-01-09 13:17:01] total 445532
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 13:17:01] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas       100 Jan  9 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:17:01] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 06:03 run_atlas
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas       105 Jan  9 06:03 job.xml
[2026-01-09 13:17:01] -rw-r--r-- 2 boincer umatlas 224809198 Jan  9 06:03 EVNT.47898824._001471.pool.root.1
[2026-01-09 13:17:01] drwxrwx--x 2 boincer umatlas      4096 Jan  9 06:03 shared
[2026-01-09 13:17:01] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 06:03 input.tar.gz
[2026-01-09 13:17:01] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 06:03 start_atlas.sh
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas         0 Jan  9 06:03 boinc_lockfile
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 06:03 pandaJob.out
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas        57 Jan  9 06:03 setup.sh.local
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas    989369 Jan  9 06:04 agis_schedconf.cvmfs.json
[2026-01-09 13:17:01] drwx------ 5 boincer umatlas      4096 Jan  9 06:04 pilot3
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas      6877 Jan  9 13:11 init_data.xml
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas 219381196 Jan  9 13:14 HITS.47898826._038314.pool.root.1
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas       531 Jan  9 13:14 boinc_task_state.xml
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas      1039 Jan  9 13:15 memory_monitor_summary.json
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas   1516240 Jan  9 13:15 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas    626053 Jan  9 13:15 log.47898826._038314.job.log.tgz.1
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas      7822 Jan  9 13:16 heartbeat.json
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas        95 Jan  9 13:16 pilot_heartbeat.json
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 13:16 boinc_mmap_file
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas        28 Jan  9 13:16 wrapper_checkpoint.txt
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas      4824 Jan  9 13:16 pilotlog.txt
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas   3434878 Jan  9 13:17 log.47898826._038314.job.log.1
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas       357 Jan  9 13:17 output.list
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas       620 Jan  9 13:17 runtime_log
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas   4075520 Jan  9 13:17 result.tar.gz
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 13:17 runtime_log.err
[2026-01-09 13:17:01] -rw------- 1 boincer umatlas       655 Jan  9 13:17 qQ7KDmeCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWCmKDmRz5UOn.diag
[2026-01-09 13:17:01] -rw-r--r-- 1 boincer umatlas     21250 Jan  9 13:17 stderr.txt
[2026-01-09 13:17:02] HITS file was successfully produced:
[2026-01-09 13:17:02] -rw------- 1 boincer umatlas 219381196 Jan  9 13:14 shared/HITS.pool.root.1
[2026-01-09 13:17:02]  *** Contents of shared directory: ***
[2026-01-09 13:17:02] total 438368
[2026-01-09 13:17:02] -rw-r--r-- 2 boincer umatlas 224809198 Jan  9 06:03 ATLAS.root_0
[2026-01-09 13:17:02] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 06:03 input.tar.gz
[2026-01-09 13:17:02] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 06:03 start_atlas.sh
[2026-01-09 13:17:02] -rw------- 1 boincer umatlas 219381196 Jan  9 13:14 HITS.pool.root.1
[2026-01-09 13:17:02] -rw------- 1 boincer umatlas   4075520 Jan  9 13:17 result.tar.gz
13:17:03 (1146253): run_atlas exited; CPU time 61268.215190
13:17:03 (1146253): called boinc_finish(0)

</stderr_txt>
]]>

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