Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:17:38 (149184): wrapper (7.7.26015): starting
02:17:38 (149184): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 02:17:38] Arguments: --nthreads 3
[2026-01-10 02:17:38] Threads: 3
[2026-01-10 02:17:38] Checking for CVMFS
[2026-01-10 02:17:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:17:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:17:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:17:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:17:38] 2.9.2.0 3607278 3073 84776 154963 2 56 16047872 36864001 0 130560 0 1876393 99.986 122247 7011 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 02:17:38] CVMFS is ok
[2026-01-10 02:17:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:17:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:17:38] Further information can be found at the LHC@home message board.
[2026-01-10 02:17:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:17:38] Checking for apptainer binary...
[2026-01-10 02:17:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:17:38] Running /usr/bin/apptainer --version
[2026-01-10 02:17:38] apptainer version 1.4.1-1.1
[2026-01-10 02:17:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:17:38] thA312
[2026-01-10 02:17:38] apptainer works
[2026-01-10 02:17:38] Set ATHENA_PROC_NUMBER=3
[2026-01-10 02:17:38] Set ATHENA_CORE_NUMBER=3
[2026-01-10 02:17:38] Starting ATLAS job with PandaID=6963190008
[2026-01-10 02:17:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:12:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:12:57] 2026-01-10 03:12:28,959 | INFO     | collected zombie processes
[2026-01-10 04:12:57] 2026-01-10 03:12:28,959 | INFO     | will attempt to kill all subprocesses of pid=159352
[2026-01-10 04:12:57] 2026-01-10 03:12:29,011 | INFO     | process IDs to be killed: [159352] (in reverse order)
[2026-01-10 04:12:57] 2026-01-10 03:12:29,037 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:12:57] 2026-01-10 03:12:29,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:12:57] 2026-01-10 03:12:29,039 | INFO     | did not find any defunct processes belonging to 159352
[2026-01-10 04:12:57] 2026-01-10 03:12:29,040 | INFO     | did not find any defunct processes belonging to 159352
[2026-01-10 04:12:57] 2026-01-10 03:12:29,040 | INFO     | ready for new job
[2026-01-10 04:12:57] 2026-01-10 03:12:29,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:12:57] 2026-01-10 03:12:29,041 | INFO     | ***************************************
[2026-01-10 04:12:57] 2026-01-10 03:12:29,041 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:12:57] 2026-01-10 03:12:29,041 | INFO     | ***************************************
[2026-01-10 04:12:57] 2026-01-10 03:12:29,041 | INFO     | 
[2026-01-10 04:12:57] 2026-01-10 03:12:29,042 | INFO     | architecture information:
[2026-01-10 04:12:57] 2026-01-10 03:12:29,042 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:12:57] 2026-01-10 03:12:29,051 | INFO     | cat /etc/os-release:
[2026-01-10 04:12:57] NAME="CentOS Linux"
[2026-01-10 04:12:57] VERSION="7 (Core)"
[2026-01-10 04:12:57] ID="centos"
[2026-01-10 04:12:57] ID_LIKE="rhel fedora"
[2026-01-10 04:12:57] VERSION_ID="7"
[2026-01-10 04:12:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:12:57] ANSI_COLOR="0;31"
[2026-01-10 04:12:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:12:57] HOME_URL="https://www.centos.org/"
[2026-01-10 04:12:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:12:57] 
[2026-01-10 04:12:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:12:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:12:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:12:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:12:57] 
[2026-01-10 04:12:57] 2026-01-10 03:12:29,051 | INFO     | ***************************************
[2026-01-10 04:12:57] 2026-01-10 03:12:29,554 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 04:12:57] 2026-01-10 03:12:29,567 | INFO     | sufficient remaining disk space (343686512640 B)
[2026-01-10 04:12:57] 2026-01-10 03:12:29,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:12:57] 2026-01-10 03:12:29,567 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | INFO     | update_server=False
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | INFO     | aborting loop
[2026-01-10 04:12:57] 2026-01-10 03:12:29,568 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:12:57] 2026-01-10 03:12:30,151 | INFO     | all job control threads have been joined
[2026-01-10 04:12:57] 2026-01-10 03:12:30,237 | INFO     | all data control threads have been joined
[2026-01-10 04:12:57] 2026-01-10 03:12:30,358 | INFO     | all payload control threads have been joined
[2026-01-10 04:12:57] 2026-01-10 03:12:30,569 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:30,574 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:30,574 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:30,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:12:57] 2026-01-10 03:12:30,733 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:30,822 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,157 | INFO     | [job] control thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,242 | INFO     | [data] control thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,300 | INFO     | [job] validate thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,323 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,364 | INFO     | [payload] control thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,435 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,526 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:31,842 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:32,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:12:57] 2026-01-10 03:12:32,672 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:36,428 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:40,180 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:12:57] 2026-01-10 03:12:41,186 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:12:57] 2026-01-10 03:12:52,057 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:12:57] 2026-01-10 03:12:52,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774003484480)>', '<ExcThread(monitor, started 139773486274304)>']
[2026-01-10 04:12:57] 2026-01-10 03:12:53,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:12:57] 2026-01-10 03:12:53,692 | INFO     | [monitor] control thread has ended
[2026-01-10 04:12:57] 2026-01-10 03:12:57,793 | INFO     | all workflow threads have been joined
[2026-01-10 04:12:57] 2026-01-10 03:12:57,793 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:12:57] 2026-01-10 03:12:57,794 | INFO     | traces error code: 0
[2026-01-10 04:12:57] 2026-01-10 03:12:57,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:12:57] 2026-01-10 03:12:57,846 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:12:57] 2026-01-10 03:12:57,848 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:12:57] 2026-01-10 03:12:57,850 [wrapper] pilotpid: 152907
[2026-01-10 04:12:57] 2026-01-10 03:12:57,852 [wrapper] Pilot exit status: 0
[2026-01-10 04:12:57] 2026-01-10 03:12:57,860 [wrapper] pandaids: 6963190008
[2026-01-10 04:12:57] 2026-01-10 03:12:57,877 [wrapper] cleanup supervisor_pilot  174414 152908
[2026-01-10 04:12:57] 2026-01-10 03:12:57,879 [wrapper] Test setup, not cleaning
[2026-01-10 04:12:57] 2026-01-10 03:12:57,881 [wrapper] apfmon messages muted
[2026-01-10 04:12:57] 2026-01-10 03:12:57,884 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:12:57] 2026-01-10 03:12:57,886 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:12:57]  *** Error codes and diagnostics ***
[2026-01-10 04:12:57]     "exeErrorCode": 0,
[2026-01-10 04:12:57]     "exeErrorDiag": "",
[2026-01-10 04:12:57]     "pilotErrorCode": 0,
[2026-01-10 04:12:57]     "pilotErrorDiag": "",
[2026-01-10 04:12:57]  *** Listing of results directory ***
[2026-01-10 04:12:57] total 437928
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 04:12:57] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc       100 Jan 10 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:12:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 02:17 run_atlas
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc       105 Jan 10 02:17 job.xml
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc 226007878 Jan 10 02:17 EVNT.47898824._001482.pool.root.1
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc    592400 Jan 10 02:17 input.tar.gz
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:17 start_atlas.sh
[2026-01-10 04:12:57] drwxrwx--x 2 boinc boinc      4096 Jan 10 02:17 shared
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:17 boinc_setup_complete
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc      6439 Jan 10 02:17 init_data.xml
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 02:17 boinc_lockfile
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc      2520 Jan 10 02:17 pandaJob.out
[2026-01-10 04:12:57] -rw------- 1 boinc boinc    989382 Jan 10 02:17 agis_schedconf.cvmfs.json
[2026-01-10 04:12:57] -rw------- 1 boinc boinc   1516240 Jan 10 02:17 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:12:57] drwx------ 5 boinc boinc      4096 Jan 10 02:17 pilot3
[2026-01-10 04:12:57] -rw------- 1 boinc boinc 215971703 Jan 10 04:12 HITS.47898826._038593.pool.root.1
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc       529 Jan 10 04:12 boinc_task_state.xml
[2026-01-10 04:12:57] -rw------- 1 boinc boinc      1020 Jan 10 04:12 memory_monitor_summary.json
[2026-01-10 04:12:57] -rw------- 1 boinc boinc    288740 Jan 10 04:12 log.47898826._038593.job.log.tgz.1
[2026-01-10 04:12:57] -rw------- 1 boinc boinc        95 Jan 10 04:12 pilot_heartbeat.json
[2026-01-10 04:12:57] -rw------- 1 boinc boinc      7765 Jan 10 04:12 heartbeat.json
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:12 boinc_mmap_file
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:12 wrapper_checkpoint.txt
[2026-01-10 04:12:57] -rw------- 1 boinc boinc      4628 Jan 10 04:12 pilotlog.txt
[2026-01-10 04:12:57] -rw------- 1 boinc boinc    991227 Jan 10 04:12 log.47898826._038593.job.log.1
[2026-01-10 04:12:57] -rw------- 1 boinc boinc       357 Jan 10 04:12 output.list
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:12 runtime_log
[2026-01-10 04:12:57] -rw------- 1 boinc boinc   1300480 Jan 10 04:12 result.tar.gz
[2026-01-10 04:12:57] -rw------- 1 boinc boinc       659 Jan 10 04:12 tuEMDmrCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBzgKDmPQ83Hn.diag
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc      8897 Jan 10 04:12 runtime_log.err
[2026-01-10 04:12:57] -rw-r--r-- 1 boinc boinc     10290 Jan 10 04:12 stderr.txt
[2026-01-10 04:12:57] HITS file was successfully produced:
[2026-01-10 04:12:57] -rw------- 1 boinc boinc 215971703 Jan 10 04:12 shared/HITS.pool.root.1
[2026-01-10 04:12:57]  *** Contents of shared directory: ***
[2026-01-10 04:12:57] total 433496
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc 226007878 Jan 10 02:17 ATLAS.root_0
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc    592400 Jan 10 02:17 input.tar.gz
[2026-01-10 04:12:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 02:17 start_atlas.sh
[2026-01-10 04:12:57] -rw------- 1 boinc boinc 215971703 Jan 10 04:12 HITS.pool.root.1
[2026-01-10 04:12:57] -rw------- 1 boinc boinc   1300480 Jan 10 04:12 result.tar.gz
04:12:59 (149184): run_atlas exited; CPU time 19964.881487
04:12:59 (149184): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN