Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:54:21 (31894): wrapper (7.7.26015): starting
05:54:21 (31894): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 05:54:21] Arguments: --nthreads 8
[2026-01-09 05:54:21] Threads: 8
[2026-01-09 05:54:21] Checking for CVMFS
[2026-01-09 05:54:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:54:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:54:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:54:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:54:21] 2.11.2.0 2795 110683 84932 154940 3 57 12059171 20275200 1 130560 0 22182600 99.765 7130515 29202 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 05:54:21] CVMFS is ok
[2026-01-09 05:54:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:54:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:54:21] Further information can be found at the LHC@home message board.
[2026-01-09 05:54:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:54:21] Checking for apptainer binary...
[2026-01-09 05:54:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:54:21] Running /usr/bin/apptainer --version
[2026-01-09 05:54:21] apptainer version 1.3.2-1.el7
[2026-01-09 05:54:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:54:23] c-204-18.aglt2.org
[2026-01-09 05:54:23] apptainer works
[2026-01-09 05:54:23] Set ATHENA_PROC_NUMBER=8
[2026-01-09 05:54:23] Set ATHENA_CORE_NUMBER=8
[2026-01-09 05:54:23] Starting ATLAS job with PandaID=6963189993
[2026-01-09 05:54:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:50:04]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:50:04] 2026-01-09 13:49:04,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:50:04] 2026-01-09 13:49:04,828 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:50:04] 2026-01-09 13:49:04,828 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:50:04] 2026-01-09 13:49:04,832 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:50:04] 2026-01-09 13:49:04,832 | INFO     | sum of square deviations: 1550429070.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,833 | INFO     | sum of deviations: 23852406049.999996
[2026-01-09 08:50:04] 2026-01-09 13:49:04,833 | INFO     | mean x: 1767961298.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,833 | INFO     | mean y: 2484156.2339181285
[2026-01-09 08:50:04] 2026-01-09 13:49:04,833 | INFO     | intersect: -27196522606.830097
[2026-01-09 08:50:04] 2026-01-09 13:49:04,834 | INFO     | chi2: 1.5435357903705034
[2026-01-09 08:50:04] 2026-01-09 13:49:04,834 | INFO     | sum of square deviations: 1418361477.5
[2026-01-09 08:50:04] 2026-01-09 13:49:04,835 | INFO     | sum of deviations: 23015233052.500004
[2026-01-09 08:50:04] 2026-01-09 13:49:04,835 | INFO     | mean x: 1767961145.5
[2026-01-09 08:50:04] 2026-01-09 13:49:04,835 | INFO     | mean y: 2483189.2710843375
[2026-01-09 08:50:04] 2026-01-09 13:49:04,835 | INFO     | intersect: -28685575840.058674
[2026-01-09 08:50:04] 2026-01-09 13:49:04,835 | INFO     | chi2: 1.544991961286266
[2026-01-09 08:50:04] 2026-01-09 13:49:04,836 | INFO     | current chi2=1.544991961286266 (change=-0.09433995148327744 %)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,836 | INFO     | right removable region: 165
[2026-01-09 08:50:04] 2026-01-09 13:49:04,836 | INFO     | sum of square deviations: 1418361477.5
[2026-01-09 08:50:04] 2026-01-09 13:49:04,837 | INFO     | sum of deviations: -3080256915.0000005
[2026-01-09 08:50:04] 2026-01-09 13:49:04,837 | INFO     | mean x: 1767961450.5
[2026-01-09 08:50:04] 2026-01-09 13:49:04,837 | INFO     | mean y: 2514869.3975903615
[2026-01-09 08:50:04] 2026-01-09 13:49:04,837 | INFO     | intersect: 3841998364.7860613
[2026-01-09 08:50:04] 2026-01-09 13:49:04,838 | INFO     | chi2: 0.06995973618553539
[2026-01-09 08:50:04] 2026-01-09 13:49:04,838 | INFO     | current chi2=0.06995973618553539 (change=95.46756630963883 %)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,838 | INFO     | sum of square deviations: 1294014960.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,839 | INFO     | sum of deviations: -1095437694.9999993
[2026-01-09 08:50:04] 2026-01-09 13:49:04,839 | INFO     | mean x: 1767961603.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,839 | INFO     | mean y: 2512365.6397515526
[2026-01-09 08:50:04] 2026-01-09 13:49:04,839 | INFO     | intersect: 1499165683.4953842
[2026-01-09 08:50:04] 2026-01-09 13:49:04,840 | INFO     | chi2: 0.049395124737056414
[2026-01-09 08:50:04] 2026-01-09 13:49:04,840 | INFO     | current chi2=0.049395124737056414 (change=29.39492423747995 %)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,840 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,841 | INFO     | sum of deviations: 4709921812.999999
[2026-01-09 08:50:04] 2026-01-09 13:49:04,841 | INFO     | mean x: 1767961755.5
[2026-01-09 08:50:04] 2026-01-09 13:49:04,841 | INFO     | mean y: 2504783.8974358975
[2026-01-09 08:50:04] 2026-01-09 13:49:04,841 | INFO     | intersect: -7071285674.894205
[2026-01-09 08:50:04] 2026-01-09 13:49:04,841 | INFO     | chi2: 0.0009433778926825587
[2026-01-09 08:50:04] 2026-01-09 13:49:04,842 | INFO     | current chi2=0.0009433778926825587 (change=98.09013966923979 %)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,842 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | sum of deviations: 3939338825.0000005
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | mean x: 1767961908.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | mean y: 2505853.536423841
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | intersect: -6521375012.267742
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | chi2: 0.0007467837568682223
[2026-01-09 08:50:04] 2026-01-09 13:49:04,843 | INFO     | current chi2=0.0007467837568682223 (change=20.8393833838217 %)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,844 | INFO     | left removable region: 40
[2026-01-09 08:50:04] 2026-01-09 13:49:04,844 | INFO     | sum of square deviations: 605592750.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,844 | INFO     | sum of deviations: 1575171280.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,845 | INFO     | mean x: 1767962335.0
[2026-01-09 08:50:04] 2026-01-09 13:49:04,845 | INFO     | mean y: 2509136.304
[2026-01-09 08:50:04] 2026-01-09 13:49:04,845 | INFO     | intersect: -4596032530.870415
[2026-01-09 08:50:04] 2026-01-09 13:49:04,845 | INFO     | chi2: 0.00026353123808180233
[2026-01-09 08:50:04] 2026-01-09 13:49:04,845 | INFO     | current memory leak: 2.60 B/s (using 125 data points, chi2=0.00)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | could have reported an average CPU frequency of 2030 MHz (9 samples)
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | ..............................
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . Timing measurements:
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . get job = 0 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . initial setup = 2 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . payload setup = 8 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . stage-in = 0 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,846 | INFO     | . payload execution = 10423 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,847 | INFO     | . stage-out = 0 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,847 | INFO     | . log creation = 0 s
[2026-01-09 08:50:04] 2026-01-09 13:49:04,847 | INFO     | ..............................
[2026-01-09 08:50:04] 2026-01-09 13:49:05,210 | INFO     | 
[2026-01-09 08:50:04] 2026-01-09 13:49:05,210 | INFO     | job summary report
[2026-01-09 08:50:04] 2026-01-09 13:49:05,210 | INFO     | --------------------------------------------------
[2026-01-09 08:50:04] 2026-01-09 13:49:05,211 | INFO     | PanDA job id: 6963189993
[2026-01-09 08:50:04] 2026-01-09 13:49:05,211 | INFO     | task id: 47898826
[2026-01-09 08:50:04] 2026-01-09 13:49:05,211 | INFO     | errors: (none)
[2026-01-09 08:50:04] 2026-01-09 13:49:05,211 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:50:04] 2026-01-09 13:49:05,211 | INFO     | pilot state: finished 
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | transexitcode: 0
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | exeerrorcode: 0
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | exeerrordiag: 
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | exitcode: 0
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | exitmsg: OK
[2026-01-09 08:50:04] 2026-01-09 13:49:05,212 | INFO     | cpuconsumptiontime: 78890 s
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | nevents: 400
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | neventsw: 0
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | pid: 9837
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | pgrp: 9837
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | corecount: 8
[2026-01-09 08:50:04] 2026-01-09 13:49:05,213 | INFO     | event service: False
[2026-01-09 08:50:04] 2026-01-09 13:49:05,214 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 10435: 2312961, 10437: 2322015, 10446: 2322217}
[2026-01-09 08:50:04] 2026-01-09 13:49:05,214 | INFO     | --------------------------------------------------
[2026-01-09 08:50:04] 2026-01-09 13:49:05,214 | INFO     | 
[2026-01-09 08:50:04] 2026-01-09 13:49:05,214 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 08:50:04] 2026-01-09 13:49:05,245 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,246 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,246 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,246 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,249 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:50:04] 2026-01-09 13:49:05,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,249 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:50:04] 2026-01-09 13:49:05,250 | INFO     | job 6963189993 has completed (purged errors)
[2026-01-09 08:50:04] 2026-01-09 13:49:05,250 | INFO     | overall cleanup function is called
[2026-01-09 08:50:04] 2026-01-09 13:49:06,258 | INFO     | --- collectZombieJob: --- 10, [9837]
[2026-01-09 08:50:04] 2026-01-09 13:49:06,258 | INFO     | zombie collector waiting for pid 9837
[2026-01-09 08:50:04] 2026-01-09 13:49:06,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:50:04] 2026-01-09 13:49:06,272 | INFO     | collected zombie processes
[2026-01-09 08:50:04] 2026-01-09 13:49:06,272 | INFO     | will attempt to kill all subprocesses of pid=9837
[2026-01-09 08:50:04] 2026-01-09 13:49:06,359 | INFO     | process IDs to be killed: [9837] (in reverse order)
[2026-01-09 08:50:04] 2026-01-09 13:49:06,417 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:50:04] 2026-01-09 13:49:06,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:50:04] 2026-01-09 13:49:06,422 | INFO     | did not find any defunct processes belonging to 9837
[2026-01-09 08:50:04] 2026-01-09 13:49:06,426 | INFO     | did not find any defunct processes belonging to 9837
[2026-01-09 08:50:04] 2026-01-09 13:49:06,426 | INFO     | ready for new job
[2026-01-09 08:50:04] 2026-01-09 13:49:06,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:50:04] 2026-01-09 13:49:06,427 | INFO     | ***************************************
[2026-01-09 08:50:04] 2026-01-09 13:49:06,428 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:50:04] 2026-01-09 13:49:06,428 | INFO     | ***************************************
[2026-01-09 08:50:04] 2026-01-09 13:49:06,428 | INFO     | 
[2026-01-09 08:50:04] 2026-01-09 13:49:06,429 | INFO     | architecture information:
[2026-01-09 08:50:04] 2026-01-09 13:49:06,429 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:50:04] 2026-01-09 13:49:06,448 | INFO     | cat /etc/os-release:
[2026-01-09 08:50:04] NAME="CentOS Linux"
[2026-01-09 08:50:04] VERSION="7 (Core)"
[2026-01-09 08:50:04] ID="centos"
[2026-01-09 08:50:04] ID_LIKE="rhel fedora"
[2026-01-09 08:50:04] VERSION_ID="7"
[2026-01-09 08:50:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:50:04] ANSI_COLOR="0;31"
[2026-01-09 08:50:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:50:04] HOME_URL="https://www.centos.org/"
[2026-01-09 08:50:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:50:04] 
[2026-01-09 08:50:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:50:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:50:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:50:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:50:04] 
[2026-01-09 08:50:04] 2026-01-09 13:49:06,449 | INFO     | ***************************************
[2026-01-09 08:50:04] 2026-01-09 13:49:06,952 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 08:50:04] 2026-01-09 13:49:06,973 | INFO     | sufficient remaining disk space (18493734912 B)
[2026-01-09 08:50:04] 2026-01-09 13:49:06,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:50:04] 2026-01-09 13:49:06,974 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:50:04] 2026-01-09 13:49:06,974 | INFO     | update_server=False
[2026-01-09 08:50:04] 2026-01-09 13:49:06,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:50:04] 2026-01-09 13:49:06,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:50:04] 2026-01-09 13:49:06,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:50:04] 2026-01-09 13:49:07,232 | INFO     | all data control threads have been joined
[2026-01-09 08:50:04] 2026-01-09 13:49:07,443 | INFO     | all payload control threads have been joined
[2026-01-09 08:50:04] 2026-01-09 13:49:07,503 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:50:04] 2026-01-09 13:49:07,504 | INFO     | aborting loop
[2026-01-09 08:50:04] 2026-01-09 13:49:07,978 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:07,997 | INFO     | [job] validate thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,184 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,235 | INFO     | [data] control thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,449 | INFO     | [payload] control thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,483 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,483 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,484 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,509 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,639 | INFO     | all job control threads have been joined
[2026-01-09 08:50:04] 2026-01-09 13:49:08,928 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:08,978 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:09,514 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:09,640 | INFO     | [job] control thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:09,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:50:04] 2026-01-09 13:49:10,946 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:10,981 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:17,513 | INFO     | job.realtimelogging is not enabled
[2026-01-09 08:50:04] 2026-01-09 13:49:18,519 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:50:04] 2026-01-09 13:49:36,502 | INFO     | PID=3298 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 08:50:04] 2026-01-09 13:49:36,503 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:50:04] 2026-01-09 13:49:36,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:50:04] 2026-01-09 13:49:36,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:50:04] 2026-01-09 13:49:57,880 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:50:04] 2026-01-09 13:49:58,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471574161216)>', '<ExcThread(monitor, started 140470839658240)>']
[2026-01-09 08:50:04] 2026-01-09 13:49:59,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:50:04] 2026-01-09 13:49:59,614 | INFO     | [monitor] control thread has ended
[2026-01-09 08:50:04] 2026-01-09 13:50:03,894 | INFO     | all workflow threads have been joined
[2026-01-09 08:50:04] 2026-01-09 13:50:03,894 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:50:04] 2026-01-09 13:50:03,895 | INFO     | traces error code: 0
[2026-01-09 08:50:04] 2026-01-09 13:50:03,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:50:04] 2026-01-09 13:50:04,006 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:50:04] 2026-01-09 13:50:04,010 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:50:04] 2026-01-09 13:50:04,014 [wrapper] pilotpid: 3298
[2026-01-09 08:50:04] 2026-01-09 13:50:04,019 [wrapper] Pilot exit status: 0
[2026-01-09 08:50:04] 2026-01-09 13:50:04,039 [wrapper] pandaids: 6963189993
[2026-01-09 08:50:04] 2026-01-09 13:50:04,089 [wrapper] cleanup supervisor_pilot 19788 3299
[2026-01-09 08:50:04] 2026-01-09 13:50:04,094 [wrapper] Test setup, not cleaning
[2026-01-09 08:50:04] 2026-01-09 13:50:04,099 [wrapper] apfmon messages muted
[2026-01-09 08:50:04] 2026-01-09 13:50:04,104 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:50:04] 2026-01-09 13:50:04,108 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:50:04]  *** Error codes and diagnostics ***
[2026-01-09 08:50:04]     "exeErrorCode": 0,
[2026-01-09 08:50:04]     "exeErrorDiag": "",
[2026-01-09 08:50:04]     "pilotErrorCode": 0,
[2026-01-09 08:50:04]     "pilotErrorDiag": "",
[2026-01-09 08:50:04]  *** Listing of results directory ***
[2026-01-09 08:50:04] total 445120
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 08:50:04] -rwx------ 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas       100 Jan  9 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:50:04] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 05:54 run_atlas
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas       105 Jan  9 05:54 job.xml
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas 226007878 Jan  9 05:54 EVNT.47898824._001482.pool.root.1
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 05:54 start_atlas.sh
[2026-01-09 08:50:04] drwxrwx--x 2 boincer umatlas      4096 Jan  9 05:54 shared
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 05:54 input.tar.gz
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas         0 Jan  9 05:54 boinc_lockfile
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 05:54 pandaJob.out
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas        57 Jan  9 05:54 setup.sh.local
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas    989369 Jan  9 05:54 agis_schedconf.cvmfs.json
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas   1516240 Jan  9 05:54 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:50:04] drwx------ 5 boincer umatlas      4096 Jan  9 05:54 pilot3
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas      5911 Jan  9 08:46 init_data.xml
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas 222187582 Jan  9 08:48 HITS.47898826._038578.pool.root.1
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas       530 Jan  9 08:48 boinc_task_state.xml
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas      1048 Jan  9 08:48 memory_monitor_summary.json
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas    396864 Jan  9 08:48 log.47898826._038578.job.log.tgz.1
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas      7846 Jan  9 08:49 heartbeat.json
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas        28 Jan  9 08:49 wrapper_checkpoint.txt
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 08:49 boinc_mmap_file
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas        95 Jan  9 08:49 pilot_heartbeat.json
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas      4817 Jan  9 08:50 pilotlog.txt
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas   1449813 Jan  9 08:50 log.47898826._038578.job.log.1
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas       357 Jan  9 08:50 output.list
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas       620 Jan  9 08:50 runtime_log
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas   1863680 Jan  9 08:50 result.tar.gz
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 08:50 runtime_log.err
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas       662 Jan  9 08:50 CrXLDmrCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5ygKDmR4bcPm.diag
[2026-01-09 08:50:04] -rw-r--r-- 1 boincer umatlas     20862 Jan  9 08:50 stderr.txt
[2026-01-09 08:50:04] HITS file was successfully produced:
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas 222187582 Jan  9 08:48 shared/HITS.pool.root.1
[2026-01-09 08:50:04]  *** Contents of shared directory: ***
[2026-01-09 08:50:04] total 440120
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas 226007878 Jan  9 05:54 ATLAS.root_0
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 05:54 start_atlas.sh
[2026-01-09 08:50:04] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 05:54 input.tar.gz
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas 222187582 Jan  9 08:48 HITS.pool.root.1
[2026-01-09 08:50:04] -rw------- 1 boincer umatlas   1863680 Jan  9 08:50 result.tar.gz
08:50:06 (31894): run_atlas exited; CPU time 78841.727426
08:50:06 (31894): called boinc_finish(0)

</stderr_txt>
]]>

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