Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:14:09 (84265): wrapper (7.7.26015): starting
06:14:09 (84265): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:14:09] Arguments: --nthreads 8
[2026-01-09 06:14:09] Threads: 8
[2026-01-09 06:14:09] Checking for CVMFS
[2026-01-09 06:14:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:14:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:14:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:14:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:14:10] 2.13.3.0 5782 20688 188476 154941 1 336 32840260 40960001 9474 16776704 0 22579759 99.690 16554804 39550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 06:14:10] CVMFS is ok
[2026-01-09 06:14:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:14:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:14:10] Further information can be found at the LHC@home message board.
[2026-01-09 06:14:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:14:10] Checking for apptainer binary...
[2026-01-09 06:14:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:14:10] Running /usr/bin/apptainer --version
[2026-01-09 06:14:10] apptainer version 1.4.5-2.el9
[2026-01-09 06:14:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:14:11] c-206-39.aglt2.org
[2026-01-09 06:14:11] apptainer works
[2026-01-09 06:14:11] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:14:11] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:14:11] Starting ATLAS job with PandaID=6963161466
[2026-01-09 06:14:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:22:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:22:35] 2026-01-09 20:21:37,528 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3236.6320312500006
[2026-01-09 15:22:35] 2026-01-09 20:21:37,538 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963161466/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,538 | INFO     | extracted standard info from prmon json
[2026-01-09 15:22:35] 2026-01-09 20:21:37,538 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:22:35] 2026-01-09 20:21:37,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:22:35] 2026-01-09 20:21:37,539 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:22:35] 2026-01-09 20:21:37,539 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:22:35] 2026-01-09 20:21:37,546 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:22:35] 2026-01-09 20:21:37,546 | INFO     | sum of square deviations: 48015820843.858376
[2026-01-09 15:22:35] 2026-01-09 20:21:37,551 | INFO     | sum of deviations: 19913838330.636856
[2026-01-09 15:22:35] 2026-01-09 20:21:37,552 | INFO     | mean x: 1767973719.8063314
[2026-01-09 15:22:35] 2026-01-09 20:21:37,552 | INFO     | mean y: 2545737.87150838
[2026-01-09 15:22:35] 2026-01-09 20:21:37,552 | INFO     | intersect: -730694727.6726985
[2026-01-09 15:22:35] 2026-01-09 20:21:37,552 | INFO     | chi2: 1.965196087467648
[2026-01-09 15:22:35] 2026-01-09 20:21:37,553 | INFO     | sum of square deviations: 46687127990.576965
[2026-01-09 15:22:35] 2026-01-09 20:21:37,558 | INFO     | sum of deviations: 53405435930.609024
[2026-01-09 15:22:35] 2026-01-09 20:21:37,558 | INFO     | mean x: 1767973567.3139098
[2026-01-09 15:22:35] 2026-01-09 20:21:37,558 | INFO     | mean y: 2549552.187969925
[2026-01-09 15:22:35] 2026-01-09 20:21:37,558 | INFO     | intersect: -2019836555.932673
[2026-01-09 15:22:35] 2026-01-09 20:21:37,559 | INFO     | chi2: 1.2780222277385123
[2026-01-09 15:22:35] 2026-01-09 20:21:37,559 | INFO     | current chi2=1.2780222277385123 (change=34.96719050640021 %)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,559 | INFO     | sum of square deviations: 45383179787.23335
[2026-01-09 15:22:35] 2026-01-09 20:21:37,564 | INFO     | sum of deviations: 51785935145.00755
[2026-01-09 15:22:35] 2026-01-09 20:21:37,564 | INFO     | mean x: 1767973414.821632
[2026-01-09 15:22:35] 2026-01-09 20:21:37,565 | INFO     | mean y: 2549362.5958254267
[2026-01-09 15:22:35] 2026-01-09 20:21:37,565 | INFO     | intersect: -2014853495.187314
[2026-01-09 15:22:35] 2026-01-09 20:21:37,565 | INFO     | chi2: 1.2779697749199004
[2026-01-09 15:22:35] 2026-01-09 20:21:37,565 | INFO     | current chi2=1.2779697749199004 (change=0.004104218023241857 %)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,565 | INFO     | right removable region: 526
[2026-01-09 15:22:35] 2026-01-09 20:21:37,566 | INFO     | sum of square deviations: 46686896374.202995
[2026-01-09 15:22:35] 2026-01-09 20:21:37,571 | INFO     | sum of deviations: -52192061941.56019
[2026-01-09 15:22:35] 2026-01-09 20:21:37,571 | INFO     | mean x: 1767973872.31203
[2026-01-09 15:22:35] 2026-01-09 20:21:37,571 | INFO     | mean y: 2553977.5093984962
[2026-01-09 15:22:35] 2026-01-09 20:21:37,571 | INFO     | intersect: 1979001525.3433113
[2026-01-09 15:22:35] 2026-01-09 20:21:37,572 | INFO     | chi2: 0.7671892717426663
[2026-01-09 15:22:35] 2026-01-09 20:21:37,572 | INFO     | current chi2=0.7671892717426663 (change=60.96118465555941 %)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,572 | INFO     | sum of square deviations: 45382684345.87477
[2026-01-09 15:22:35] 2026-01-09 20:21:37,578 | INFO     | sum of deviations: -52691608956.80649
[2026-01-09 15:22:35] 2026-01-09 20:21:37,578 | INFO     | mean x: 1767974024.8197343
[2026-01-09 15:22:35] 2026-01-09 20:21:37,578 | INFO     | mean y: 2554035.0967741935
[2026-01-09 15:22:35] 2026-01-09 20:21:37,578 | INFO     | intersect: 2055261963.3368237
[2026-01-09 15:22:35] 2026-01-09 20:21:37,579 | INFO     | chi2: 0.7667489909680394
[2026-01-09 15:22:35] 2026-01-09 20:21:37,579 | INFO     | current chi2=0.7667489909680394 (change=0.05738880753986332 %)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,579 | INFO     | left removable region: 20
[2026-01-09 15:22:35] 2026-01-09 20:21:37,579 | INFO     | sum of square deviations: 40170756097.53362
[2026-01-09 15:22:35] 2026-01-09 20:21:37,584 | INFO     | sum of deviations: -15295399144.837948
[2026-01-09 15:22:35] 2026-01-09 20:21:37,584 | INFO     | mean x: 1767973994.339921
[2026-01-09 15:22:35] 2026-01-09 20:21:37,584 | INFO     | mean y: 2557229.5513833994
[2026-01-09 15:22:35] 2026-01-09 20:21:37,584 | INFO     | intersect: 675730217.7686217
[2026-01-09 15:22:35] 2026-01-09 20:21:37,585 | INFO     | chi2: 0.07181745201282466
[2026-01-09 15:22:35] 2026-01-09 20:21:37,585 | INFO     | current memory leak: -0.38 B/s (using 506 data points, chi2=0.07)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,585 | INFO     | could have reported an average CPU frequency of 3245 MHz (21 samples)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,585 | INFO     | ..............................
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . Timing measurements:
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . get job = 0 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . initial setup = 2 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . payload setup = 32 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . stage-in = 0 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . payload execution = 32726 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . stage-out = 2 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | . log creation = 0 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,586 | INFO     | ..............................
[2026-01-09 15:22:35] 2026-01-09 20:21:37,659 | INFO     | 
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | job summary report
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | --------------------------------------------------
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | PanDA job id: 6963161466
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | task id: 47898826
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | errors: (none)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | pilot state: finished 
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | transexitcode: 0
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | exeerrorcode: 0
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | exeerrordiag: 
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | exitcode: 0
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | exitmsg: OK
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | cpuconsumptiontime: 47309 s
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | nevents: 400
[2026-01-09 15:22:35] 2026-01-09 20:21:37,660 | INFO     | neventsw: 0
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | pid: 98104
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | pgrp: 98104
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | corecount: 8
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | event service: False
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | sizes: {0: 2283800, 1: 2283999, 2: 2283999, 12: 2284027, 17: 2284317, 23: 2284345, 32762: 2324165, 32765: 2333219, 32772: 2333357}
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | --------------------------------------------------
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | 
[2026-01-09 15:22:35] 2026-01-09 20:21:37,661 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 15:22:35] 2026-01-09 20:21:37,683 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | job 6963161466 has completed (purged errors)
[2026-01-09 15:22:35] 2026-01-09 20:21:37,685 | INFO     | overall cleanup function is called
[2026-01-09 15:22:35] 2026-01-09 20:21:38,046 | INFO     | PID=91165 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 15:22:35] 2026-01-09 20:21:38,047 | INFO     | .. there are 10 such processes running
[2026-01-09 15:22:35] 2026-01-09 20:21:38,694 | INFO     | --- collectZombieJob: --- 10, [98104]
[2026-01-09 15:22:35] 2026-01-09 20:21:38,694 | INFO     | zombie collector waiting for pid 98104
[2026-01-09 15:22:35] 2026-01-09 20:21:38,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:22:35] 2026-01-09 20:21:38,694 | INFO     | collected zombie processes
[2026-01-09 15:22:35] 2026-01-09 20:21:38,694 | INFO     | will attempt to kill all subprocesses of pid=98104
[2026-01-09 15:22:35] 2026-01-09 20:21:38,967 | INFO     | process IDs to be killed: [98104] (in reverse order)
[2026-01-09 15:22:35] 2026-01-09 20:21:39,069 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:22:35] 2026-01-09 20:21:39,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:22:35] 2026-01-09 20:21:39,080 | INFO     | did not find any defunct processes belonging to 98104
[2026-01-09 15:22:35] 2026-01-09 20:21:39,099 | INFO     | did not find any defunct processes belonging to 98104
[2026-01-09 15:22:35] 2026-01-09 20:21:39,099 | INFO     | ready for new job
[2026-01-09 15:22:35] 2026-01-09 20:21:39,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:22:35] 2026-01-09 20:21:39,102 | INFO     | ***************************************
[2026-01-09 15:22:35] 2026-01-09 20:21:39,102 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:22:35] 2026-01-09 20:21:39,103 | INFO     | ***************************************
[2026-01-09 15:22:35] 2026-01-09 20:21:39,103 | INFO     | 
[2026-01-09 15:22:35] 2026-01-09 20:21:39,106 | INFO     | architecture information:
[2026-01-09 15:22:35] 2026-01-09 20:21:39,107 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:22:35] 2026-01-09 20:21:39,125 | INFO     | cat /etc/os-release:
[2026-01-09 15:22:35] NAME="CentOS Linux"
[2026-01-09 15:22:35] VERSION="7 (Core)"
[2026-01-09 15:22:35] ID="centos"
[2026-01-09 15:22:35] ID_LIKE="rhel fedora"
[2026-01-09 15:22:35] VERSION_ID="7"
[2026-01-09 15:22:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:22:35] ANSI_COLOR="0;31"
[2026-01-09 15:22:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:22:35] HOME_URL="https://www.centos.org/"
[2026-01-09 15:22:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:22:35] 
[2026-01-09 15:22:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:22:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:22:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:22:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:22:35] 
[2026-01-09 15:22:35] 2026-01-09 20:21:39,125 | INFO     | ***************************************
[2026-01-09 15:22:35] 2026-01-09 20:21:39,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 15:22:35] 2026-01-09 20:21:39,646 | INFO     | sufficient remaining disk space (84073775104 B)
[2026-01-09 15:22:35] 2026-01-09 20:21:39,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:22:35] 2026-01-09 20:21:39,646 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:22:35] 2026-01-09 20:21:39,646 | INFO     | update_server=False
[2026-01-09 15:22:35] 2026-01-09 20:21:39,647 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:22:35] 2026-01-09 20:21:39,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:22:35] 2026-01-09 20:21:39,648 | INFO     | aborting loop
[2026-01-09 15:22:35] 2026-01-09 20:21:39,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:22:35] 2026-01-09 20:21:40,123 | INFO     | all data control threads have been joined
[2026-01-09 15:22:35] 2026-01-09 20:21:40,456 | INFO     | all payload control threads have been joined
[2026-01-09 15:22:35] 2026-01-09 20:21:40,652 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:40,654 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:40,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:22:35] 2026-01-09 20:21:40,661 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:40,663 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:40,675 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:40,684 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,129 | INFO     | [data] control thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,132 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,287 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,299 | INFO     | all job control threads have been joined
[2026-01-09 15:22:35] 2026-01-09 20:21:41,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:22:35] 2026-01-09 20:21:41,367 | INFO     | [job] validate thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,462 | INFO     | [payload] control thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:41,581 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:42,305 | INFO     | [job] control thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:42,663 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:45,361 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:47,370 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:22:35] 2026-01-09 20:21:50,099 | INFO     | job.realtimelogging is not enabled
[2026-01-09 15:22:35] 2026-01-09 20:21:51,106 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:22:35] 2026-01-09 20:21:51,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631381534528)>', '<ExcThread(monitor, started 139631030941440)>']
[2026-01-09 15:22:35] 2026-01-09 20:21:56,171 | INFO     | all workflow threads have been joined
[2026-01-09 15:22:35] 2026-01-09 20:21:56,171 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:22:35] 2026-01-09 20:21:56,171 | INFO     | traces error code: 0
[2026-01-09 15:22:35] 2026-01-09 20:21:56,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:22:35] 2026-01-09 20:22:10,429 | INFO     | PID=91165 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | INFO     | .. there are 11 such processes running
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:22:35] 2026-01-09 20:22:10,430 | INFO     | [monitor] control thread has ended
[2026-01-09 15:22:35] 2026-01-09 20:22:10,534 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:22:35] 2026-01-09 20:22:10,537 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:22:35] 2026-01-09 20:22:10,539 [wrapper] pilotpid: 91165
[2026-01-09 15:22:35] 2026-01-09 20:22:10,546 [wrapper] Pilot exit status: 0
[2026-01-09 15:22:35] 2026-01-09 20:22:10,556 [wrapper] pandaids: 6963161466
[2026-01-09 15:22:35] 2026-01-09 20:22:10,621 [wrapper] cleanup supervisor_pilot 1068195 91166
[2026-01-09 15:22:35] 2026-01-09 20:22:10,624 [wrapper] Test setup, not cleaning
[2026-01-09 15:22:35] 2026-01-09 20:22:10,627 [wrapper] apfmon messages muted
[2026-01-09 15:22:35] 2026-01-09 20:22:10,629 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:22:35] 2026-01-09 20:22:10,631 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:22:35]  *** Error codes and diagnostics ***
[2026-01-09 15:22:35]     "exeErrorCode": 0,
[2026-01-09 15:22:35]     "exeErrorDiag": "",
[2026-01-09 15:22:35]     "pilotErrorCode": 0,
[2026-01-09 15:22:35]     "pilotErrorDiag": "",
[2026-01-09 15:22:35]  *** Listing of results directory ***
[2026-01-09 15:22:35] total 446360
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 15:22:35] -rwx------. 1 boincer umatlas     36322 Jan  8 16:46 runpilot2-wrapper.sh
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:47 queuedata.json
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas       100 Jan  9 06:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:22:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 06:14 run_atlas
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas       105 Jan  9 06:14 job.xml
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas 223485414 Jan  9 06:14 EVNT.47898824._001281.pool.root.1
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:14 start_atlas.sh
[2026-01-09 15:22:35] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 06:14 shared
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 06:14 input.tar.gz
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas         0 Jan  9 06:14 boinc_lockfile
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 06:14 pandaJob.out
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas        57 Jan  9 06:14 setup.sh.local
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas    989369 Jan  9 06:14 agis_schedconf.cvmfs.json
[2026-01-09 15:22:35] drwx------. 5 boincer umatlas      4096 Jan  9 06:14 pilot3
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas      6905 Jan  9 15:20 init_data.xml
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas       531 Jan  9 15:20 boinc_task_state.xml
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas 219944800 Jan  9 15:20 HITS.47898826._033128.pool.root.1
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas      1032 Jan  9 15:21 memory_monitor_summary.json
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas   1516240 Jan  9 15:21 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas    681187 Jan  9 15:21 log.47898826._033128.job.log.tgz.1
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas        95 Jan  9 15:21 pilot_heartbeat.json
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas      7769 Jan  9 15:21 heartbeat.json
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas       821 Jan  9 15:22 pilotlog.txt
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas   4181112 Jan  9 15:22 log.47898826._033128.job.log.1
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas       357 Jan  9 15:22 output.list
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas       620 Jan  9 15:22 runtime_log
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas   4884480 Jan  9 15:22 result.tar.gz
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 15:22 runtime_log.err
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas       657 Jan  9 15:22 GHUNDmF1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6HgKDmiC8mXn.diag
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 15:22 boinc_mmap_file
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas        28 Jan  9 15:22 wrapper_checkpoint.txt
[2026-01-09 15:22:35] -rw-r--r--. 1 boincer umatlas     21251 Jan  9 15:22 stderr.txt
[2026-01-09 15:22:35] HITS file was successfully produced:
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas 219944800 Jan  9 15:20 shared/HITS.pool.root.1
[2026-01-09 15:22:35]  *** Contents of shared directory: ***
[2026-01-09 15:22:35] total 438416
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas 223485414 Jan  9 06:14 ATLAS.root_0
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:14 start_atlas.sh
[2026-01-09 15:22:35] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 06:14 input.tar.gz
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas 219944800 Jan  9 15:20 HITS.pool.root.1
[2026-01-09 15:22:35] -rw-------. 1 boincer umatlas   4884480 Jan  9 15:22 result.tar.gz
15:22:37 (84265): run_atlas exited; CPU time 47931.779428
15:22:37 (84265): called boinc_finish(0)

</stderr_txt>
]]>

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