Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:54:40 (3741464): wrapper (7.7.26015): starting
23:54:40 (3741464): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 23:54:40] Arguments: --nthreads 3
[2026-01-09 23:54:40] Threads: 3
[2026-01-09 23:54:40] Checking for CVMFS
[2026-01-09 23:54:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:54:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:54:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:54:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:54:41] 2.9.2.0 2993219 3001 80132 154959 0 57 22071274 36864000 0 130560 0 1931849 99.988 111309 5341 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 23:54:41] CVMFS is ok
[2026-01-09 23:54:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:54:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:54:41] Further information can be found at the LHC@home message board.
[2026-01-09 23:54:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:54:41] Checking for apptainer binary...
[2026-01-09 23:54:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:54:41] Running /usr/bin/apptainer --version
[2026-01-09 23:54:41] apptainer version 1.4.1-1.1
[2026-01-09 23:54:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:54:41] magicA161
[2026-01-09 23:54:41] apptainer works
[2026-01-09 23:54:41] Set ATHENA_PROC_NUMBER=3
[2026-01-09 23:54:41] Set ATHENA_CORE_NUMBER=3
[2026-01-09 23:54:41] Starting ATLAS job with PandaID=6963192084
[2026-01-09 23:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:44:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | job 6963192084 has completed (purged errors)
[2026-01-10 01:44:59] 2026-01-10 00:43:53,399 | INFO     | overall cleanup function is called
[2026-01-10 01:44:59] 2026-01-10 00:43:53,431 | INFO     | number of running child processes to parent process 3751622: 1
[2026-01-10 01:44:59] 2026-01-10 00:43:53,431 | INFO     | maximum number of monitored processes: 6
[2026-01-10 01:44:59] 2026-01-10 00:43:53,431 | INFO     | aborting job monitoring since job object (job id=6963192084) has expired
[2026-01-10 01:44:59] 2026-01-10 00:43:54,406 | INFO     | --- collectZombieJob: --- 10, [3751622]
[2026-01-10 01:44:59] 2026-01-10 00:43:54,406 | INFO     | zombie collector waiting for pid 3751622
[2026-01-10 01:44:59] 2026-01-10 00:43:54,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:44:59] 2026-01-10 00:43:54,406 | INFO     | collected zombie processes
[2026-01-10 01:44:59] 2026-01-10 00:43:54,406 | INFO     | will attempt to kill all subprocesses of pid=3751622
[2026-01-10 01:44:59] 2026-01-10 00:43:54,446 | INFO     | process IDs to be killed: [3751622] (in reverse order)
[2026-01-10 01:44:59] 2026-01-10 00:43:54,470 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:44:59] 2026-01-10 00:43:54,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:44:59] 2026-01-10 00:43:54,471 | INFO     | did not find any defunct processes belonging to 3751622
[2026-01-10 01:44:59] 2026-01-10 00:43:54,472 | INFO     | did not find any defunct processes belonging to 3751622
[2026-01-10 01:44:59] 2026-01-10 00:43:54,472 | INFO     | ready for new job
[2026-01-10 01:44:59] 2026-01-10 00:43:54,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | ***************************************
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | ***************************************
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | 
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | architecture information:
[2026-01-10 01:44:59] 2026-01-10 00:43:54,473 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:44:59] 2026-01-10 00:43:54,481 | INFO     | cat /etc/os-release:
[2026-01-10 01:44:59] NAME="CentOS Linux"
[2026-01-10 01:44:59] VERSION="7 (Core)"
[2026-01-10 01:44:59] ID="centos"
[2026-01-10 01:44:59] ID_LIKE="rhel fedora"
[2026-01-10 01:44:59] VERSION_ID="7"
[2026-01-10 01:44:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:44:59] ANSI_COLOR="0;31"
[2026-01-10 01:44:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:44:59] HOME_URL="https://www.centos.org/"
[2026-01-10 01:44:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:44:59] 
[2026-01-10 01:44:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:44:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:44:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:44:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:44:59] 
[2026-01-10 01:44:59] 2026-01-10 00:43:54,481 | INFO     | ***************************************
[2026-01-10 01:44:59] 2026-01-10 00:43:54,985 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | INFO     | sufficient remaining disk space (382744920064 B)
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | INFO     | update_server=False
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:44:59] 2026-01-10 00:43:54,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:44:59] 2026-01-10 00:43:54,998 | INFO     | aborting loop
[2026-01-10 01:44:59] 2026-01-10 00:43:55,298 | INFO     | all payload control threads have been joined
[2026-01-10 01:44:59] 2026-01-10 00:43:55,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:44:59] 2026-01-10 00:43:55,828 | INFO     | all data control threads have been joined
[2026-01-10 01:44:59] 2026-01-10 00:43:56,003 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,003 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,003 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,007 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,019 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,236 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,249 | INFO     | all job control threads have been joined
[2026-01-10 01:44:59] 2026-01-10 00:43:56,304 | INFO     | [payload] control thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,434 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,834 | INFO     | [data] control thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,856 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:56,966 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:57,254 | INFO     | [job] control thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:57,278 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:57,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:44:59] 2026-01-10 00:43:57,411 | INFO     | [job] validate thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:43:57,556 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:44:01,347 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:44:59] 2026-01-10 00:44:25,410 | INFO     | PID=3745182 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 01:44:59] 2026-01-10 00:44:25,410 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:44:59] 2026-01-10 00:44:25,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:44:59] 2026-01-10 00:44:25,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:44:59] 2026-01-10 00:44:53,917 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:44:59] 2026-01-10 00:44:54,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074943964992)>', '<ExcThread(monitor, started 140074318558976)>']
[2026-01-10 01:44:59] 2026-01-10 00:44:54,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:44:59] 2026-01-10 00:44:54,559 | INFO     | [monitor] control thread has ended
[2026-01-10 01:44:59] 2026-01-10 00:44:59,252 | INFO     | all workflow threads have been joined
[2026-01-10 01:44:59] 2026-01-10 00:44:59,252 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:44:59] 2026-01-10 00:44:59,253 | INFO     | traces error code: 0
[2026-01-10 01:44:59] 2026-01-10 00:44:59,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:44:59] 2026-01-10 00:44:59,303 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:44:59] 2026-01-10 00:44:59,305 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:44:59] 2026-01-10 00:44:59,307 [wrapper] pilotpid: 3745182
[2026-01-10 01:44:59] 2026-01-10 00:44:59,310 [wrapper] Pilot exit status: 0
[2026-01-10 01:44:59] 2026-01-10 00:44:59,317 [wrapper] pandaids: 6963192084
[2026-01-10 01:44:59] 2026-01-10 00:44:59,333 [wrapper] cleanup supervisor_pilot 3766230 3745183
[2026-01-10 01:44:59] 2026-01-10 00:44:59,335 [wrapper] Test setup, not cleaning
[2026-01-10 01:44:59] 2026-01-10 00:44:59,337 [wrapper] apfmon messages muted
[2026-01-10 01:44:59] 2026-01-10 00:44:59,340 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:44:59] 2026-01-10 00:44:59,342 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:44:59]  *** Error codes and diagnostics ***
[2026-01-10 01:44:59]     "exeErrorCode": 0,
[2026-01-10 01:44:59]     "exeErrorDiag": "",
[2026-01-10 01:44:59]     "pilotErrorCode": 0,
[2026-01-10 01:44:59]     "pilotErrorDiag": "",
[2026-01-10 01:44:59]  *** Listing of results directory ***
[2026-01-10 01:44:59] total 436436
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 01:44:59] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc       100 Jan  9 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:44:59] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 23:54 run_atlas
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc       105 Jan  9 23:54 job.xml
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc 224710881 Jan  9 23:54 EVNT.47898824._001497.pool.root.1
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc    592402 Jan  9 23:54 input.tar.gz
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:54 start_atlas.sh
[2026-01-10 01:44:59] drwxrwx--x 2 boinc boinc      4096 Jan  9 23:54 shared
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:54 boinc_setup_complete
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc      6448 Jan  9 23:54 init_data.xml
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:54 boinc_lockfile
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc      2519 Jan  9 23:54 pandaJob.out
[2026-01-10 01:44:59] -rw------- 1 boinc boinc    989375 Jan  9 23:54 agis_schedconf.cvmfs.json
[2026-01-10 01:44:59] -rw------- 1 boinc boinc   1516240 Jan  9 23:54 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:44:59] drwx------ 5 boinc boinc      4096 Jan  9 23:54 pilot3
[2026-01-10 01:44:59] -rw------- 1 boinc boinc 215874057 Jan 10 01:43 HITS.47898826._038952.pool.root.1
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc       529 Jan 10 01:43 boinc_task_state.xml
[2026-01-10 01:44:59] -rw------- 1 boinc boinc      1016 Jan 10 01:43 memory_monitor_summary.json
[2026-01-10 01:44:59] -rw------- 1 boinc boinc    263185 Jan 10 01:43 log.47898826._038952.job.log.tgz.1
[2026-01-10 01:44:59] -rw------- 1 boinc boinc      7748 Jan 10 01:43 heartbeat.json
[2026-01-10 01:44:59] -rw------- 1 boinc boinc        95 Jan 10 01:44 pilot_heartbeat.json
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc        27 Jan 10 01:44 wrapper_checkpoint.txt
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc      8192 Jan 10 01:44 boinc_mmap_file
[2026-01-10 01:44:59] -rw------- 1 boinc boinc      4752 Jan 10 01:44 pilotlog.txt
[2026-01-10 01:44:59] -rw------- 1 boinc boinc    949223 Jan 10 01:44 log.47898826._038952.job.log.1
[2026-01-10 01:44:59] -rw------- 1 boinc boinc       357 Jan 10 01:44 output.list
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc       620 Jan 10 01:44 runtime_log
[2026-01-10 01:44:59] -rw------- 1 boinc boinc   1228800 Jan 10 01:44 result.tar.gz
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc      8912 Jan 10 01:44 runtime_log.err
[2026-01-10 01:44:59] -rw------- 1 boinc boinc       662 Jan 10 01:44 7k7LDmdCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFBmKDm0DCwwn.diag
[2026-01-10 01:44:59] -rw-r--r-- 1 boinc boinc     12082 Jan 10 01:44 stderr.txt
[2026-01-10 01:44:59] HITS file was successfully produced:
[2026-01-10 01:44:59] -rw------- 1 boinc boinc 215874057 Jan 10 01:43 shared/HITS.pool.root.1
[2026-01-10 01:44:59]  *** Contents of shared directory: ***
[2026-01-10 01:44:59] total 432068
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc 224710881 Jan  9 23:54 ATLAS.root_0
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc    592402 Jan  9 23:54 input.tar.gz
[2026-01-10 01:44:59] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:54 start_atlas.sh
[2026-01-10 01:44:59] -rw------- 1 boinc boinc 215874057 Jan 10 01:43 HITS.pool.root.1
[2026-01-10 01:44:59] -rw------- 1 boinc boinc   1228800 Jan 10 01:44 result.tar.gz
01:45:00 (3741464): run_atlas exited; CPU time 18979.153114
01:45:00 (3741464): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN