Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:45:52 (3787865): wrapper (7.7.26015): starting
00:45:52 (3787865): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 00:45:52] Arguments: --nthreads 3
[2026-01-10 00:45:52] Threads: 3
[2026-01-10 00:45:52] Checking for CVMFS
[2026-01-10 00:45:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:45:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:45:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:45:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:45:52] 2.9.2.0 3098039 2837 83988 154961 0 57 20353496 36864001 0 130560 0 1755043 99.987 108508 5447 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:45:52] CVMFS is ok
[2026-01-10 00:45:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:45:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:45:52] Further information can be found at the LHC@home message board.
[2026-01-10 00:45:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:45:52] Checking for apptainer binary...
[2026-01-10 00:45:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:45:52] Running /usr/bin/apptainer --version
[2026-01-10 00:45:52] apptainer version 1.4.1-1.1
[2026-01-10 00:45:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:45:52] atlasA223b
[2026-01-10 00:45:52] apptainer works
[2026-01-10 00:45:52] Set ATHENA_PROC_NUMBER=3
[2026-01-10 00:45:52] Set ATHENA_CORE_NUMBER=3
[2026-01-10 00:45:52] Starting ATLAS job with PandaID=6963189557
[2026-01-10 00:45:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:46:14]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:46:14] 2026-01-10 01:45:13,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:46:14] 2026-01-10 01:45:13,249 | INFO     | all data control threads have been joined
[2026-01-10 02:46:14] 2026-01-10 01:45:13,498 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 02:46:14] 2026-01-10 01:45:13,498 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 02:46:14] 2026-01-10 01:45:13,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:46:14] 2026-01-10 01:45:13,498 | INFO     | will abort loop
[2026-01-10 02:46:14] 2026-01-10 01:45:14,013 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,014 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,168 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,254 | INFO     | [data] control thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,454 | INFO     | all job control threads have been joined
[2026-01-10 02:46:14] 2026-01-10 01:45:14,463 | INFO     | all payload control threads have been joined
[2026-01-10 02:46:14] 2026-01-10 01:45:14,503 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,513 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,545 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,713 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,920 | INFO     | [job] validate thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:14,977 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:15,035 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:15,076 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:15,264 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:15,459 | INFO     | [job] control thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:15,468 | INFO     | [payload] control thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:17,014 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:46:14] 2026-01-10 01:45:57,254 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-01-10 02:46:14] 2026-01-10 01:46:07,048 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:46:14] 2026-01-10 01:46:08,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986103277376)>', '<ExcThread(monitor, started 139985365743360)>']
[2026-01-10 02:46:14] 2026-01-10 01:46:09,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:46:14] 2026-01-10 01:46:09,284 | INFO     | [monitor] control thread has ended
[2026-01-10 02:46:14] 2026-01-10 01:46:13,971 | INFO     | all workflow threads have been joined
[2026-01-10 02:46:14] 2026-01-10 01:46:13,971 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:46:14] 2026-01-10 01:46:13,971 | INFO     | traces error code: 0
[2026-01-10 02:46:14] 2026-01-10 01:46:13,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:46:14] 2026-01-10 01:46:14,022 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:46:14] 2026-01-10 01:46:14,024 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:46:14] 2026-01-10 01:46:14,027 [wrapper] pilotpid: 3791585
[2026-01-10 02:46:14] 2026-01-10 01:46:14,029 [wrapper] Pilot exit status: 0
[2026-01-10 02:46:14] 2026-01-10 01:46:14,037 [wrapper] pandaids: 6963189557
[2026-01-10 02:46:14] 2026-01-10 01:46:14,058 [wrapper] cleanup supervisor_pilot 3815754 3791586
[2026-01-10 02:46:14] 2026-01-10 01:46:14,061 [wrapper] Test setup, not cleaning
[2026-01-10 02:46:14] 2026-01-10 01:46:14,063 [wrapper] apfmon messages muted
[2026-01-10 02:46:14] 2026-01-10 01:46:14,066 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:46:14] 2026-01-10 01:46:14,068 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:46:14]  *** Error codes and diagnostics ***
[2026-01-10 02:46:14]     "exeErrorCode": 0,
[2026-01-10 02:46:14]     "exeErrorDiag": "",
[2026-01-10 02:46:14]     "pilotErrorCode": 0,
[2026-01-10 02:46:14]     "pilotErrorDiag": "",
[2026-01-10 02:46:14]  *** Listing of results directory ***
[2026-01-10 02:46:14] total 439224
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 02:46:14] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:46:14] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:45 run_atlas
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:45 job.xml
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc 222437430 Jan 10 00:45 EVNT.47898824._001476.pool.root.1
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:45 input.tar.gz
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:45 start_atlas.sh
[2026-01-10 02:46:14] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:45 shared
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:45 boinc_setup_complete
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      6449 Jan 10 00:45 init_data.xml
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:45 boinc_lockfile
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      2519 Jan 10 00:45 pandaJob.out
[2026-01-10 02:46:14] -rw------- 1 boinc boinc    989374 Jan 10 00:45 agis_schedconf.cvmfs.json
[2026-01-10 02:46:14] -rw------- 1 boinc boinc   1516240 Jan 10 00:45 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:46:14] drwx------ 5 boinc boinc      4096 Jan 10 00:45 pilot3
[2026-01-10 02:46:14] -rw------- 1 boinc boinc        95 Jan 10 02:44 pilot_heartbeat.json
[2026-01-10 02:46:14] -rw------- 1 boinc boinc 220827811 Jan 10 02:44 HITS.47898826._038426.pool.root.1
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc       529 Jan 10 02:44 boinc_task_state.xml
[2026-01-10 02:46:14] -rw------- 1 boinc boinc      1012 Jan 10 02:44 memory_monitor_summary.json
[2026-01-10 02:46:14] -rw------- 1 boinc boinc    269739 Jan 10 02:45 log.47898826._038426.job.log.tgz.1
[2026-01-10 02:46:14] -rw------- 1 boinc boinc      7754 Jan 10 02:45 heartbeat.json
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      8192 Jan 10 02:45 boinc_mmap_file
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc        27 Jan 10 02:45 wrapper_checkpoint.txt
[2026-01-10 02:46:14] -rw------- 1 boinc boinc      4742 Jan 10 02:46 pilotlog.txt
[2026-01-10 02:46:14] -rw------- 1 boinc boinc   1027333 Jan 10 02:46 log.47898826._038426.job.log.1
[2026-01-10 02:46:14] -rw------- 1 boinc boinc       357 Jan 10 02:46 output.list
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc       620 Jan 10 02:46 runtime_log
[2026-01-10 02:46:14] -rw------- 1 boinc boinc   1320960 Jan 10 02:46 result.tar.gz
[2026-01-10 02:46:14] -rw------- 1 boinc boinc       663 Jan 10 02:46 yhTMDmeCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7xgKDmvW9syn.diag
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      8917 Jan 10 02:46 runtime_log.err
[2026-01-10 02:46:14] -rw-r--r-- 1 boinc boinc      6712 Jan 10 02:46 stderr.txt
[2026-01-10 02:46:14] HITS file was successfully produced:
[2026-01-10 02:46:14] -rw------- 1 boinc boinc 220827811 Jan 10 02:44 shared/HITS.pool.root.1
[2026-01-10 02:46:14]  *** Contents of shared directory: ***
[2026-01-10 02:46:14] total 434780
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc 222437430 Jan 10 00:45 ATLAS.root_0
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:45 input.tar.gz
[2026-01-10 02:46:14] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:45 start_atlas.sh
[2026-01-10 02:46:14] -rw------- 1 boinc boinc 220827811 Jan 10 02:44 HITS.pool.root.1
[2026-01-10 02:46:14] -rw------- 1 boinc boinc   1320960 Jan 10 02:46 result.tar.gz
02:46:15 (3787865): run_atlas exited; CPU time 20719.191258
02:46:15 (3787865): called boinc_finish(0)

</stderr_txt>
]]>

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