Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:07:39 (661051): wrapper (7.7.26015): starting
03:07:39 (661051): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 03:07:39] Arguments: --nthreads 12
[2026-01-09 03:07:39] Threads: 12
[2026-01-09 03:07:39] Checking for CVMFS
[2026-01-09 03:07:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:07:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:07:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:07:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:07:40] 2.11.5.0 886365 56470 216472 154940 1 850 24750900 45568000 14525 130560 0 384172250 99.796 235399457 22608 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-09 03:07:40] CVMFS is ok
[2026-01-09 03:07:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:07:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:07:40] Further information can be found at the LHC@home message board.
[2026-01-09 03:07:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:07:40] Checking for apptainer binary...
[2026-01-09 03:07:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:07:40] Running /usr/bin/apptainer --version
[2026-01-09 03:07:40] apptainer version 1.4.1-1.el9
[2026-01-09 03:07:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:07:41] wns0063.triumf.lcg
[2026-01-09 03:07:41] apptainer works
[2026-01-09 03:07:41] Set ATHENA_PROC_NUMBER=12
[2026-01-09 03:07:41] Set ATHENA_CORE_NUMBER=12
[2026-01-09 03:07:41] Starting ATLAS job with PandaID=6963189519
[2026-01-09 03:07:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 03:12:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | wrong length of table data, x=[1767956943.0], y=[2238.0] (must be same and length>=4)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | INFO     | could have reported an average CPU frequency of 2681 MHz (4 samples)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . Timing measurements:
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . get job = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . initial setup = 3 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload setup = 13 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-in = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload execution = 38 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-out = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . log creation = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963189519/pilotlog.txt
[2026-01-09 03:12:26] 2026-01-09 11:11:52,152 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-09 03:12:26] - Log from pilotlog.txt -
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963189519/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | extracted standard info from prmon json
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | wrong length of table data, x=[1767956943.0], y=[2238.0] (must be same and length>=4)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | INFO     | could have reported an average CPU frequency of 2681 MHz (4 samples)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . Timing measurements:
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . get job = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . initial setup = 3 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload setup = 13 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-in = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload execution = 38 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-out = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . log creation = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963189519/pilotlog.txt
[2026-01-09 03:12:26] 2026-01-09 11:11:52,152 | WARNING  | 
[2026-01-09 03:12:26] [begin log extracts]
[2026-01-09 03:12:26] - Log from pilotlog.txt -
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963189519/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | extracted standard info from prmon json
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 03:12:26] 2026-01-09 11:11:52,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | WARNING  | wrong length of table data, x=[1767956943.0], y=[2238.0] (must be same and length>=4)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,082 | INFO     | could have reported an average CPU frequency of 2681 MHz (4 samples)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . Timing measurements:
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . get job = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . initial setup = 3 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload setup = 13 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-in = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . payload execution = 38 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . stage-out = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | . log creation = 0 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | ..............................
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 03:12:26] 2026-01-09 11:11:52,104 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963189519/pilotlog.txt
[2026-01-09 03:12:26] [end log extracts]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,152 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,153 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | 
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | job summary report
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | --------------------------------------------------
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | PanDA job id: 6963189519
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | task id: 47898826
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-09 03:09:23,686 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | pilot state: failed 
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | transexitcode: 65
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | exeerrorcode: 65
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | exitcode: 65
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | cpuconsumptiontime: 18 s
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | nevents: 0
[2026-01-09 03:12:26] 2026-01-09 11:11:52,475 | INFO     | neventsw: 0
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | pid: 676073
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | pgrp: 676073
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | corecount: 12
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | event service: False
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | sizes: {0: 2283797, 1: 2283996, 12: 2283996, 14: 2284286, 22: 2284314, 55: 2307834, 57: 2312186, 60: 2312214, 195: 2312380}
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | --------------------------------------------------
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | 
[2026-01-09 03:12:26] 2026-01-09 11:11:52,476 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | job 6963189519 has completed (purged errors)
[2026-01-09 03:12:26] 2026-01-09 11:11:52,634 | INFO     | overall cleanup function is called
[2026-01-09 03:12:26] 2026-01-09 11:11:53,641 | INFO     | --- collectZombieJob: --- 10, [676073]
[2026-01-09 03:12:26] 2026-01-09 11:11:53,641 | INFO     | zombie collector waiting for pid 676073
[2026-01-09 03:12:26] 2026-01-09 11:11:53,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 03:12:26] 2026-01-09 11:11:53,641 | INFO     | collected zombie processes
[2026-01-09 03:12:26] 2026-01-09 11:11:53,641 | INFO     | will attempt to kill all subprocesses of pid=676073
[2026-01-09 03:12:26] 2026-01-09 11:11:54,693 | INFO     | process IDs to be killed: [676073] (in reverse order)
[2026-01-09 03:12:26] 2026-01-09 11:11:54,765 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 03:12:26] 2026-01-09 11:11:54,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 03:12:26] 2026-01-09 11:11:54,776 | INFO     | did not find any defunct processes belonging to 676073
[2026-01-09 03:12:26] 2026-01-09 11:11:54,784 | INFO     | did not find any defunct processes belonging to 676073
[2026-01-09 03:12:26] 2026-01-09 11:11:54,784 | INFO     | ready for new job
[2026-01-09 03:12:26] 2026-01-09 11:11:54,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 03:12:26] 2026-01-09 11:11:54,785 | INFO     | ***************************************
[2026-01-09 03:12:26] 2026-01-09 11:11:54,785 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 03:12:26] 2026-01-09 11:11:54,786 | INFO     | ***************************************
[2026-01-09 03:12:26] 2026-01-09 11:11:54,786 | INFO     | 
[2026-01-09 03:12:26] 2026-01-09 11:11:54,788 | INFO     | architecture information:
[2026-01-09 03:12:26] 2026-01-09 11:11:54,788 | INFO     | executing command: cat /etc/os-release
[2026-01-09 03:12:26] 2026-01-09 11:11:54,809 | INFO     | cat /etc/os-release:
[2026-01-09 03:12:26] NAME="CentOS Linux"
[2026-01-09 03:12:26] VERSION="7 (Core)"
[2026-01-09 03:12:26] ID="centos"
[2026-01-09 03:12:26] ID_LIKE="rhel fedora"
[2026-01-09 03:12:26] VERSION_ID="7"
[2026-01-09 03:12:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 03:12:26] ANSI_COLOR="0;31"
[2026-01-09 03:12:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 03:12:26] HOME_URL="https://www.centos.org/"
[2026-01-09 03:12:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 03:12:26] 
[2026-01-09 03:12:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 03:12:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 03:12:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 03:12:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 03:12:26] 
[2026-01-09 03:12:26] 2026-01-09 11:11:54,809 | INFO     | ***************************************
[2026-01-09 03:12:26] 2026-01-09 11:11:55,313 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-09 03:12:26] 2026-01-09 11:11:55,384 | INFO     | sufficient remaining disk space (1659816116224 B)
[2026-01-09 03:12:26] 2026-01-09 11:11:55,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 03:12:26] 2026-01-09 11:11:55,384 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 03:12:26] 2026-01-09 11:11:55,384 | INFO     | update_server=False
[2026-01-09 03:12:26] 2026-01-09 11:11:55,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 03:12:26] 2026-01-09 11:11:55,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 03:12:26] 2026-01-09 11:11:55,467 | INFO     | all data control threads have been joined
[2026-01-09 03:12:26] 2026-01-09 11:11:56,132 | INFO     | all payload control threads have been joined
[2026-01-09 03:12:26] 2026-01-09 11:11:56,298 | INFO     | all job control threads have been joined
[2026-01-09 03:12:26] 2026-01-09 11:11:56,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:12:26] 2026-01-09 11:11:56,359 | INFO     | aborting loop
[2026-01-09 03:12:26] 2026-01-09 11:11:56,391 | INFO     | [job] retrieve thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,473 | INFO     | [data] control thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,486 | INFO     | [payload] failed_post thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,593 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,711 | INFO     | [data] copytool_in thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,766 | INFO     | [job] validate thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,949 | INFO     | [payload] validate_post thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,954 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:56,991 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:57,138 | INFO     | [payload] control thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:57,304 | INFO     | [job] control thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:57,365 | INFO     | [job] job monitor thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:57,392 | INFO     | [data] copytool_out thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:57,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:12:26] 2026-01-09 11:11:57,731 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:58,408 | INFO     | [job] queue monitor thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:11:58,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 03:12:26] 2026-01-09 11:12:02,429 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 03:12:26] 2026-01-09 11:12:04,589 | INFO     | [monitor] cgroup control has ended
[2026-01-09 03:12:26] 2026-01-09 11:12:06,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139877262640960)>', '<ExcThread(monitor, started 139876716492544)>']
[2026-01-09 03:12:26] 2026-01-09 11:12:11,559 | INFO     | all workflow threads have been joined
[2026-01-09 03:12:26] 2026-01-09 11:12:11,559 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 03:12:26] 2026-01-09 11:12:11,559 | INFO     | traces error code: 0
[2026-01-09 03:12:26] 2026-01-09 11:12:11,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 03:12:26] 2026-01-09 11:12:24,887 | INFO     | PID=667466 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 03:12:26] 2026-01-09 11:12:24,887 | INFO     | .. there are 28 such processes running
[2026-01-09 03:12:26] 2026-01-09 11:12:24,888 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 03:12:26] 2026-01-09 11:12:24,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 03:12:26] 2026-01-09 11:12:24,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 03:12:26] 2026-01-09 11:12:24,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 03:12:26] 2026-01-09 11:12:24,889 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 03:12:26] 2026-01-09 11:12:24,889 | INFO     | [monitor] control thread has ended
[2026-01-09 03:12:26] 2026-01-09 11:12:25,030 [wrapper] ==== pilot stdout END ====
[2026-01-09 03:12:26] 2026-01-09 11:12:25,071 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 03:12:26] 2026-01-09 11:12:25,083 [wrapper] pilotpid: 667466
[2026-01-09 03:12:26] 2026-01-09 11:12:25,104 [wrapper] Pilot exit status: 0
[2026-01-09 03:12:26] 2026-01-09 11:12:25,217 [wrapper] pandaids: 6963189519
[2026-01-09 03:12:26] 2026-01-09 11:12:25,569 [wrapper] cleanup supervisor_pilot  667472 667467
[2026-01-09 03:12:26] 2026-01-09 11:12:25,589 [wrapper] Test setup, not cleaning
[2026-01-09 03:12:26] 2026-01-09 11:12:25,604 [wrapper] apfmon messages muted
[2026-01-09 03:12:26] 2026-01-09 11:12:25,611 [wrapper] ==== wrapper stdout END ====
[2026-01-09 03:12:26] 2026-01-09 11:12:25,613 [wrapper] ==== wrapper stderr END ====
[2026-01-09 03:12:26]  *** Error codes and diagnostics ***
[2026-01-09 03:12:26]     "exeErrorCode": 65,
[2026-01-09 03:12:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-09 03:12:26]     "pilotErrorCode": 1305,
[2026-01-09 03:12:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-09 03:12:26]  *** Listing of results directory ***
[2026-01-09 03:12:26] total 222524
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc    579449 Jan  8 20:21 pilot3.tar.gz
[2026-01-09 03:12:26] -rwx------. 1 boinc boinc     36322 Jan  8 20:22 runpilot2-wrapper.sh
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc      5112 Jan  8 20:24 queuedata.json
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc       100 Jan  9 03:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 03:12:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 03:07 run_atlas
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc       105 Jan  9 03:07 job.xml
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc      6595 Jan  9 03:07 init_data.xml
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc 223725975 Jan  9 03:07 EVNT.47898824._001474.pool.root.1
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc     15847 Jan  9 03:07 start_atlas.sh
[2026-01-09 03:12:26] drwxrwx--x. 2 boinc boinc      4096 Jan  9 03:07 shared
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc    592398 Jan  9 03:07 input.tar.gz
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc         0 Jan  9 03:07 boinc_lockfile
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc      2520 Jan  9 03:07 pandaJob.out
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc    989369 Jan  9 03:08 agis_schedconf.cvmfs.json
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc   1516240 Jan  9 03:08 agis_ddmendpoints.agis.ALL.json
[2026-01-09 03:12:26] drwx------. 5 boinc boinc      4096 Jan  9 03:08 pilot3
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc       523 Jan  9 03:09 boinc_task_state.xml
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc       982 Jan  9 03:09 memory_monitor_summary.json
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc     21607 Jan  9 03:09 log.47898826._038388.job.log.tgz.1
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc      8433 Jan  9 03:11 heartbeat.json
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc      8192 Jan  9 03:12 boinc_mmap_file
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc        95 Jan  9 03:12 pilot_heartbeat.json
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc       892 Jan  9 03:12 pilotlog.txt
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc        22 Jan  9 03:12 wrapper_checkpoint.txt
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc     90987 Jan  9 03:12 log.47898826._038388.job.log.1
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc       188 Jan  9 03:12 output.list
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc       620 Jan  9 03:12 runtime_log
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc    133120 Jan  9 03:12 result.tar.gz
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc      8636 Jan  9 03:12 runtime_log.err
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc       644 Jan  9 03:12 hRjLDmeCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsxgKDmMkOnLm.diag
[2026-01-09 03:12:26] -rw-r--r--. 1 boinc boinc     21330 Jan  9 03:12 stderr.txt
[2026-01-09 03:12:26] No HITS result produced
[2026-01-09 03:12:26]  *** Contents of shared directory: ***
[2026-01-09 03:12:26] total 219216
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc 223725975 Jan  9 03:07 ATLAS.root_0
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc     15847 Jan  9 03:07 start_atlas.sh
[2026-01-09 03:12:26] -rw-r--r--. 2 boinc boinc    592398 Jan  9 03:07 input.tar.gz
[2026-01-09 03:12:26] -rw-------. 1 boinc boinc    133120 Jan  9 03:12 result.tar.gz
03:12:27 (661051): run_atlas exited; CPU time 26.461950
03:12:27 (661051): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN