Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:27:53 (49506): wrapper (7.7.26015): starting
20:27:53 (49506): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 20:27:53] Arguments: --nthreads 4
[2026-01-09 20:27:53] Threads: 4
[2026-01-09 20:27:53] Checking for CVMFS
[2026-01-09 20:27:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:27:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:27:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:27:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:27:53] 2.9.2.0 3660082 2116 94400 154955 0 57 18484721 36864001 0 130560 0 1490657 99.989 80998 5503 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:27:53] CVMFS is ok
[2026-01-09 20:27:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:27:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:27:53] Further information can be found at the LHC@home message board.
[2026-01-09 20:27:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:27:53] Checking for apptainer binary...
[2026-01-09 20:27:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:27:53] Running /usr/bin/apptainer --version
[2026-01-09 20:27:53] apptainer version 1.4.1-1.1
[2026-01-09 20:27:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:27:54] madmaxA277
[2026-01-09 20:27:54] apptainer works
[2026-01-09 20:27:54] Set ATHENA_PROC_NUMBER=4
[2026-01-09 20:27:54] Set ATHENA_CORE_NUMBER=4
[2026-01-09 20:27:54] Starting ATLAS job with PandaID=6963189997
[2026-01-09 20:27:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:07:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | job 6963189997 has completed (purged errors)
[2026-01-09 22:07:22] 2026-01-09 21:06:50,832 | INFO     | overall cleanup function is called
[2026-01-09 22:07:22] 2026-01-09 21:06:51,834 | INFO     | --- collectZombieJob: --- 10, [59881]
[2026-01-09 22:07:22] 2026-01-09 21:06:51,834 | INFO     | zombie collector waiting for pid 59881
[2026-01-09 22:07:22] 2026-01-09 21:06:51,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:07:22] 2026-01-09 21:06:51,834 | INFO     | collected zombie processes
[2026-01-09 22:07:22] 2026-01-09 21:06:51,834 | INFO     | will attempt to kill all subprocesses of pid=59881
[2026-01-09 22:07:22] 2026-01-09 21:06:51,881 | INFO     | process IDs to be killed: [59881] (in reverse order)
[2026-01-09 22:07:22] 2026-01-09 21:06:51,914 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:07:22] 2026-01-09 21:06:51,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:07:22] 2026-01-09 21:06:51,916 | INFO     | did not find any defunct processes belonging to 59881
[2026-01-09 22:07:22] 2026-01-09 21:06:51,917 | INFO     | did not find any defunct processes belonging to 59881
[2026-01-09 22:07:22] 2026-01-09 21:06:51,917 | INFO     | ready for new job
[2026-01-09 22:07:22] 2026-01-09 21:06:51,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:07:22] 2026-01-09 21:06:51,918 | INFO     | ***************************************
[2026-01-09 22:07:22] 2026-01-09 21:06:51,918 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:07:22] 2026-01-09 21:06:51,918 | INFO     | ***************************************
[2026-01-09 22:07:22] 2026-01-09 21:06:51,918 | INFO     | 
[2026-01-09 22:07:22] 2026-01-09 21:06:51,919 | INFO     | architecture information:
[2026-01-09 22:07:22] 2026-01-09 21:06:51,919 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:07:22] 2026-01-09 21:06:51,932 | INFO     | cat /etc/os-release:
[2026-01-09 22:07:22] NAME="CentOS Linux"
[2026-01-09 22:07:22] VERSION="7 (Core)"
[2026-01-09 22:07:22] ID="centos"
[2026-01-09 22:07:22] ID_LIKE="rhel fedora"
[2026-01-09 22:07:22] VERSION_ID="7"
[2026-01-09 22:07:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:07:22] ANSI_COLOR="0;31"
[2026-01-09 22:07:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:07:22] HOME_URL="https://www.centos.org/"
[2026-01-09 22:07:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:07:22] 
[2026-01-09 22:07:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:07:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:07:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:07:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:07:22] 
[2026-01-09 22:07:22] 2026-01-09 21:06:51,932 | INFO     | ***************************************
[2026-01-09 22:07:22] 2026-01-09 21:06:52,435 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | INFO     | sufficient remaining disk space (341291565056 B)
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | INFO     | update_server=False
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:07:22] 2026-01-09 21:06:52,452 | INFO     | aborting loop
[2026-01-09 22:07:22] 2026-01-09 21:06:52,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:07:22] 2026-01-09 21:06:52,715 | INFO     | all payload control threads have been joined
[2026-01-09 22:07:22] 2026-01-09 21:06:53,007 | INFO     | all job control threads have been joined
[2026-01-09 22:07:22] 2026-01-09 21:06:53,378 | INFO     | all data control threads have been joined
[2026-01-09 22:07:22] 2026-01-09 21:06:53,458 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,458 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,458 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,501 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,512 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,701 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:53,720 | INFO     | [payload] control thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,012 | INFO     | [job] control thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,266 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,383 | INFO     | [data] control thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,602 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,681 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,861 | INFO     | [job] validate thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,899 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:54,933 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:06:55,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:07:22] 2026-01-09 21:06:59,286 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:07:22] 2026-01-09 21:07:08,033 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:07:22] 2026-01-09 21:07:08,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140578274694976)>', '<ExcThread(monitor, started 140577567930112)>']
[2026-01-09 22:07:22] 2026-01-09 21:07:13,040 | INFO     | all workflow threads have been joined
[2026-01-09 22:07:22] 2026-01-09 21:07:13,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:07:22] 2026-01-09 21:07:13,041 | INFO     | traces error code: 0
[2026-01-09 22:07:22] 2026-01-09 21:07:13,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | INFO     | PID=53294 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:07:22] 2026-01-09 21:07:22,663 | INFO     | [monitor] control thread has ended
[2026-01-09 22:07:22] 2026-01-09 21:07:22,739 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:07:22] 2026-01-09 21:07:22,743 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:07:22] 2026-01-09 21:07:22,746 [wrapper] pilotpid: 53294
[2026-01-09 22:07:22] 2026-01-09 21:07:22,750 [wrapper] Pilot exit status: 0
[2026-01-09 22:07:22] 2026-01-09 21:07:22,761 [wrapper] pandaids: 6963189997
[2026-01-09 22:07:22] 2026-01-09 21:07:22,782 [wrapper] cleanup supervisor_pilot   72586 53295
[2026-01-09 22:07:22] 2026-01-09 21:07:22,786 [wrapper] Test setup, not cleaning
[2026-01-09 22:07:22] 2026-01-09 21:07:22,790 [wrapper] apfmon messages muted
[2026-01-09 22:07:22] 2026-01-09 21:07:22,793 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:07:22] 2026-01-09 21:07:22,797 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:07:22]  *** Error codes and diagnostics ***
[2026-01-09 22:07:22]     "exeErrorCode": 0,
[2026-01-09 22:07:22]     "exeErrorDiag": "",
[2026-01-09 22:07:22]     "pilotErrorCode": 0,
[2026-01-09 22:07:22]     "pilotErrorDiag": "",
[2026-01-09 22:07:22]  *** Listing of results directory ***
[2026-01-09 22:07:22] total 442020
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 22:07:22] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:07:22] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:27 run_atlas
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:27 job.xml
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc 226007878 Jan  9 20:27 EVNT.47898824._001482.pool.root.1
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc    592395 Jan  9 20:27 input.tar.gz
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:27 start_atlas.sh
[2026-01-09 22:07:22] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:27 shared
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:27 boinc_setup_complete
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc      6372 Jan  9 20:27 init_data.xml
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:27 boinc_lockfile
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc      2520 Jan  9 20:27 pandaJob.out
[2026-01-09 22:07:22] -rw------- 1 boinc boinc    989364 Jan  9 20:28 agis_schedconf.cvmfs.json
[2026-01-09 22:07:22] -rw------- 1 boinc boinc   1516240 Jan  9 20:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:07:22] drwx------ 5 boinc boinc      4096 Jan  9 20:28 pilot3
[2026-01-09 22:07:22] -rw------- 1 boinc boinc 220450007 Jan  9 22:06 HITS.47898826._038582.pool.root.1
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc       529 Jan  9 22:06 boinc_task_state.xml
[2026-01-09 22:07:22] -rw------- 1 boinc boinc        95 Jan  9 22:06 pilot_heartbeat.json
[2026-01-09 22:07:22] -rw------- 1 boinc boinc      1019 Jan  9 22:06 memory_monitor_summary.json
[2026-01-09 22:07:22] -rw------- 1 boinc boinc    277339 Jan  9 22:06 log.47898826._038582.job.log.tgz.1
[2026-01-09 22:07:22] -rw------- 1 boinc boinc      7783 Jan  9 22:06 heartbeat.json
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc      8192 Jan  9 22:07 boinc_mmap_file
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc        27 Jan  9 22:07 wrapper_checkpoint.txt
[2026-01-09 22:07:22] -rw------- 1 boinc boinc       745 Jan  9 22:07 pilotlog.txt
[2026-01-09 22:07:22] -rw------- 1 boinc boinc    859305 Jan  9 22:07 log.47898826._038582.job.log.1
[2026-01-09 22:07:22] -rw------- 1 boinc boinc       357 Jan  9 22:07 output.list
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc       620 Jan  9 22:07 runtime_log
[2026-01-09 22:07:22] -rw------- 1 boinc boinc   1157120 Jan  9 22:07 result.tar.gz
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc      8917 Jan  9 22:07 runtime_log.err
[2026-01-09 22:07:22] -rw------- 1 boinc boinc       663 Jan  9 22:07 YbELDmRCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZAmKDmeNt0mn.diag
[2026-01-09 22:07:22] -rw-r--r-- 1 boinc boinc     11708 Jan  9 22:07 stderr.txt
[2026-01-09 22:07:22] HITS file was successfully produced:
[2026-01-09 22:07:22] -rw------- 1 boinc boinc 220450007 Jan  9 22:06 shared/HITS.pool.root.1
[2026-01-09 22:07:22]  *** Contents of shared directory: ***
[2026-01-09 22:07:22] total 437732
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc 226007878 Jan  9 20:27 ATLAS.root_0
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc    592395 Jan  9 20:27 input.tar.gz
[2026-01-09 22:07:22] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:27 start_atlas.sh
[2026-01-09 22:07:22] -rw------- 1 boinc boinc 220450007 Jan  9 22:06 HITS.pool.root.1
[2026-01-09 22:07:22] -rw------- 1 boinc boinc   1157120 Jan  9 22:07 result.tar.gz
22:07:24 (49506): run_atlas exited; CPU time 22675.294700
22:07:24 (49506): called boinc_finish(0)

</stderr_txt>
]]>

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