Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:12:49 (22642): wrapper (7.7.26015): starting
14:12:49 (22642): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:12:49] Arguments: --nthreads 8
[2026-01-09 14:12:49] Threads: 8
[2026-01-09 14:12:49] Checking for CVMFS
[2026-01-09 14:12:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:12:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:12:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:12:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:12:49] 2.11.2.0 22677 35458 97240 154944 3 57 22065899 25165824 0 130560 0 7025811 99.703 8847235 2572 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 14:12:49] CVMFS is ok
[2026-01-09 14:12:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:12:49] Checking for apptainer binary...
[2026-01-09 14:12:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:12:49] Running /usr/bin/apptainer --version
[2026-01-09 14:12:49] apptainer version 1.3.2-1.el7
[2026-01-09 14:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:12:51] cg-vwn370.simple-grid.lan
[2026-01-09 14:12:51] apptainer works
[2026-01-09 14:12:51] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:12:51] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:12:51] Starting ATLAS job with PandaID=6963191959
[2026-01-09 14:12:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:03:28]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:03:28] 2026-01-09 16:02:30,402 | INFO     | monitor loop #697: job 0:6963191959 is in state 'finished'
[2026-01-09 17:03:28] 2026-01-09 16:02:30,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:03:28] 2026-01-09 16:02:30,988 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 17:03:28] 2026-01-09 16:02:30,989 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 17:03:28] 2026-01-09 16:02:30,991 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6963191959/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:03:28] 2026-01-09 16:02:30,992 | INFO     | extracted standard info from prmon json
[2026-01-09 17:03:28] 2026-01-09 16:02:30,992 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:03:28] 2026-01-09 16:02:30,992 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:03:28] 2026-01-09 16:02:30,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:03:28] 2026-01-09 16:02:30,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:03:28] 2026-01-09 16:02:30,997 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:03:28] 2026-01-09 16:02:30,997 | INFO     | sum of square deviations: 1418361477.5
[2026-01-09 17:03:28] 2026-01-09 16:02:30,998 | INFO     | sum of deviations: 22501893164.500015
[2026-01-09 17:03:28] 2026-01-09 16:02:30,999 | INFO     | mean x: 1767969450.5
[2026-01-09 17:03:28] 2026-01-09 16:02:30,999 | INFO     | mean y: 2488648.7409638553
[2026-01-09 17:03:28] 2026-01-09 16:02:30,999 | INFO     | intersect: -28045833534.52335
[2026-01-09 17:03:28] 2026-01-09 16:02:30,999 | INFO     | chi2: 1.571475899706209
[2026-01-09 17:03:28] 2026-01-09 16:02:31,000 | INFO     | sum of square deviations: 1294014960.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,001 | INFO     | sum of deviations: 21979143813.000004
[2026-01-09 17:03:28] 2026-01-09 16:02:31,001 | INFO     | mean x: 1767969298.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,001 | INFO     | mean y: 2488007.465838509
[2026-01-09 17:03:28] 2026-01-09 16:02:31,001 | INFO     | intersect: -30026880012.909023
[2026-01-09 17:03:28] 2026-01-09 16:02:31,002 | INFO     | chi2: 1.5725491883668816
[2026-01-09 17:03:28] 2026-01-09 16:02:31,002 | INFO     | current chi2=1.5725491883668816 (change=-0.06829813049460266 %)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,002 | INFO     | right removable region: 160
[2026-01-09 17:03:28] 2026-01-09 16:02:31,002 | INFO     | sum of square deviations: 1294014960.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,003 | INFO     | sum of deviations: -4628208409.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,003 | INFO     | mean x: 1767969603.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,004 | INFO     | mean y: 2521546.416149068
[2026-01-09 17:03:28] 2026-01-09 16:02:31,004 | INFO     | intersect: 6325888768.894776
[2026-01-09 17:03:28] 2026-01-09 16:02:31,004 | INFO     | chi2: 0.0771498683852411
[2026-01-09 17:03:28] 2026-01-09 16:02:31,004 | INFO     | current chi2=0.0771498683852411 (change=95.09061078189843 %)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,005 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,006 | INFO     | sum of deviations: -9957766971.499998
[2026-01-09 17:03:28] 2026-01-09 16:02:31,006 | INFO     | mean x: 1767969755.5
[2026-01-09 17:03:28] 2026-01-09 16:02:31,006 | INFO     | mean y: 2528432.032051282
[2026-01-09 17:03:28] 2026-01-09 16:02:31,006 | INFO     | intersect: 14958079400.109055
[2026-01-09 17:03:28] 2026-01-09 16:02:31,006 | INFO     | chi2: 0.013187301276976302
[2026-01-09 17:03:28] 2026-01-09 16:02:31,007 | INFO     | current chi2=0.013187301276976302 (change=82.90690372778516 %)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,007 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,008 | INFO     | sum of deviations: -10016562705.999998
[2026-01-09 17:03:28] 2026-01-09 16:02:31,008 | INFO     | mean x: 1767969908.0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,008 | INFO     | mean y: 2528508.19205298
[2026-01-09 17:03:28] 2026-01-09 16:02:31,008 | INFO     | intersect: 16590885178.001772
[2026-01-09 17:03:28] 2026-01-09 16:02:31,009 | INFO     | chi2: 0.011631303339037615
[2026-01-09 17:03:28] 2026-01-09 16:02:31,009 | INFO     | current chi2=0.011631303339037615 (change=11.79921429910229 %)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,009 | INFO     | left removable region: 30
[2026-01-09 17:03:28] 2026-01-09 16:02:31,009 | INFO     | sum of square deviations: 681212772.5
[2026-01-09 17:03:28] 2026-01-09 16:02:31,010 | INFO     | sum of deviations: -7197514256.999999
[2026-01-09 17:03:28] 2026-01-09 16:02:31,010 | INFO     | mean x: 1767970182.5
[2026-01-09 17:03:28] 2026-01-09 16:02:31,010 | INFO     | mean y: 2525286.3384615383
[2026-01-09 17:03:28] 2026-01-09 16:02:31,011 | INFO     | intersect: 18682431342.407955
[2026-01-09 17:03:28] 2026-01-09 16:02:31,011 | INFO     | chi2: 0.010825163393257462
[2026-01-09 17:03:28] 2026-01-09 16:02:31,011 | INFO     | current memory leak: -10.57 B/s (using 130 data points, chi2=0.01)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | ..............................
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | . Timing measurements:
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | . get job = 0 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | . initial setup = 2 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | . payload setup = 7 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,012 | INFO     | . stage-in = 0 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,013 | INFO     | . payload execution = 10128 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,013 | INFO     | . stage-out = 1 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,013 | INFO     | . log creation = 0 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,013 | INFO     | ..............................
[2026-01-09 17:03:28] 2026-01-09 16:02:31,128 | INFO     | 
[2026-01-09 17:03:28] 2026-01-09 16:02:31,128 | INFO     | job summary report
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | --------------------------------------------------
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | PanDA job id: 6963191959
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | task id: 47898826
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | errors: (none)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | pilot state: finished 
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | transexitcode: 0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | exeerrorcode: 0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,129 | INFO     | exeerrordiag: 
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | exitcode: 0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | exitmsg: OK
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | cpuconsumptiontime: 75876 s
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | nevents: 400
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | neventsw: 0
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | pid: 358
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | pgrp: 358
[2026-01-09 17:03:28] 2026-01-09 16:02:31,130 | INFO     | corecount: 8
[2026-01-09 17:03:28] 2026-01-09 16:02:31,131 | INFO     | event service: False
[2026-01-09 17:03:28] 2026-01-09 16:02:31,131 | INFO     | sizes: {0: 2283969, 6: 2284231, 11: 2284259, 10140: 2312683, 10141: 2321737, 10148: 2321939}
[2026-01-09 17:03:28] 2026-01-09 16:02:31,131 | INFO     | --------------------------------------------------
[2026-01-09 17:03:28] 2026-01-09 16:02:31,131 | INFO     | 
[2026-01-09 17:03:28] 2026-01-09 16:02:31,131 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-09 17:03:28] 2026-01-09 16:02:31,171 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | job 6963191959 has completed (purged errors)
[2026-01-09 17:03:28] 2026-01-09 16:02:31,174 | INFO     | overall cleanup function is called
[2026-01-09 17:03:28] 2026-01-09 16:02:32,183 | INFO     | --- collectZombieJob: --- 10, [358]
[2026-01-09 17:03:28] 2026-01-09 16:02:32,183 | INFO     | zombie collector waiting for pid 358
[2026-01-09 17:03:28] 2026-01-09 16:02:32,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:03:28] 2026-01-09 16:02:32,183 | INFO     | collected zombie processes
[2026-01-09 17:03:28] 2026-01-09 16:02:32,184 | INFO     | will attempt to kill all subprocesses of pid=358
[2026-01-09 17:03:28] 2026-01-09 16:02:32,262 | INFO     | process IDs to be killed: [358] (in reverse order)
[2026-01-09 17:03:28] 2026-01-09 16:02:32,338 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:03:28] 2026-01-09 16:02:32,338 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:03:28] 2026-01-09 16:02:32,340 | INFO     | did not find any defunct processes belonging to 358
[2026-01-09 17:03:28] 2026-01-09 16:02:32,342 | INFO     | did not find any defunct processes belonging to 358
[2026-01-09 17:03:28] 2026-01-09 16:02:32,342 | INFO     | ready for new job
[2026-01-09 17:03:28] 2026-01-09 16:02:32,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:03:28] 2026-01-09 16:02:32,344 | INFO     | ***************************************
[2026-01-09 17:03:28] 2026-01-09 16:02:32,344 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:03:28] 2026-01-09 16:02:32,344 | INFO     | ***************************************
[2026-01-09 17:03:28] 2026-01-09 16:02:32,344 | INFO     | 
[2026-01-09 17:03:28] 2026-01-09 16:02:32,345 | INFO     | pilot is running in a VM
[2026-01-09 17:03:28] 2026-01-09 16:02:32,345 | INFO     | architecture information:
[2026-01-09 17:03:28] 2026-01-09 16:02:32,346 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:03:28] 2026-01-09 16:02:32,375 | INFO     | cat /etc/os-release:
[2026-01-09 17:03:28] NAME="CentOS Linux"
[2026-01-09 17:03:28] VERSION="7 (Core)"
[2026-01-09 17:03:28] ID="centos"
[2026-01-09 17:03:28] ID_LIKE="rhel fedora"
[2026-01-09 17:03:28] VERSION_ID="7"
[2026-01-09 17:03:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:03:28] ANSI_COLOR="0;31"
[2026-01-09 17:03:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:03:28] HOME_URL="https://www.centos.org/"
[2026-01-09 17:03:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:03:28] 
[2026-01-09 17:03:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:03:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:03:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:03:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:03:28] 
[2026-01-09 17:03:28] 2026-01-09 16:02:32,376 | INFO     | ***************************************
[2026-01-09 17:03:28] 2026-01-09 16:02:32,879 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-09 17:03:28] 2026-01-09 16:02:32,908 | INFO     | sufficient remaining disk space (498122883072 B)
[2026-01-09 17:03:28] 2026-01-09 16:02:32,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:03:28] 2026-01-09 16:02:32,909 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:03:28] 2026-01-09 16:02:32,909 | INFO     | update_server=False
[2026-01-09 17:03:28] 2026-01-09 16:02:32,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:03:28] 2026-01-09 16:02:32,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:03:28] 2026-01-09 16:02:32,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:03:28] 2026-01-09 16:02:33,545 | INFO     | all data control threads have been joined
[2026-01-09 17:03:28] 2026-01-09 16:02:33,582 | INFO     | all job control threads have been joined
[2026-01-09 17:03:28] 2026-01-09 16:02:33,857 | INFO     | all payload control threads have been joined
[2026-01-09 17:03:28] 2026-01-09 16:02:33,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:03:28] 2026-01-09 16:02:33,912 | INFO     | aborting loop
[2026-01-09 17:03:28] 2026-01-09 16:02:33,915 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:33,916 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,305 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,550 | INFO     | [data] control thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,588 | INFO     | [job] control thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,652 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,769 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,822 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,863 | INFO     | [payload] control thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,875 | INFO     | [job] validate thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,916 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:34,917 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:35,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:03:28] 2026-01-09 16:02:35,266 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:35,466 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:35,467 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:02:39,007 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:03:28] 2026-01-09 16:03:02,406 | INFO     | PID=26382 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 17:03:28] 2026-01-09 16:03:02,406 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:03:28] 2026-01-09 16:03:02,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:03:28] 2026-01-09 16:03:02,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:03:28] 2026-01-09 16:03:23,375 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:03:28] 2026-01-09 16:03:23,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140540414367552)>', '<ExcThread(monitor, started 140539819177728)>']
[2026-01-09 17:03:28] 2026-01-09 16:03:23,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:03:28] 2026-01-09 16:03:23,510 | INFO     | [monitor] control thread has ended
[2026-01-09 17:03:28] 2026-01-09 16:03:28,457 | INFO     | all workflow threads have been joined
[2026-01-09 17:03:28] 2026-01-09 16:03:28,457 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:03:28] 2026-01-09 16:03:28,457 | INFO     | traces error code: 0
[2026-01-09 17:03:28] 2026-01-09 16:03:28,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:03:28] 2026-01-09 16:03:28,603 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:03:28] 2026-01-09 16:03:28,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:03:28] 2026-01-09 16:03:28,616 [wrapper] pilotpid: 26382
[2026-01-09 17:03:28] 2026-01-09 16:03:28,625 [wrapper] Pilot exit status: 0
[2026-01-09 17:03:28] 2026-01-09 16:03:28,647 [wrapper] pandaids: 6963191959
[2026-01-09 17:03:28] 2026-01-09 16:03:28,700 [wrapper] cleanup supervisor_pilot 19285 26383
[2026-01-09 17:03:28] 2026-01-09 16:03:28,705 [wrapper] Test setup, not cleaning
[2026-01-09 17:03:28] 2026-01-09 16:03:28,718 [wrapper] apfmon messages muted
[2026-01-09 17:03:28] 2026-01-09 16:03:28,724 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:03:28] 2026-01-09 16:03:28,729 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:03:28]  *** Error codes and diagnostics ***
[2026-01-09 17:03:28]     "exeErrorCode": 0,
[2026-01-09 17:03:28]     "exeErrorDiag": "",
[2026-01-09 17:03:28]     "pilotErrorCode": 0,
[2026-01-09 17:03:28]     "pilotErrorDiag": "",
[2026-01-09 17:03:28]  *** Listing of results directory ***
[2026-01-09 17:03:28] total 440600
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 17:03:28] -rwx------. 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc       100 Jan  9 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:03:28] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 14:12 run_atlas
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc       105 Jan  9 14:12 job.xml
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc      6390 Jan  9 14:12 init_data.xml
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc 222704907 Jan  9 14:12 EVNT.47898824._001492.pool.root.1
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:12 start_atlas.sh
[2026-01-09 17:03:28] drwxrwx--x. 2 boinc boinc        68 Jan  9 14:12 shared
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc    592398 Jan  9 14:12 input.tar.gz
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc         0 Jan  9 14:12 boinc_lockfile
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc      2519 Jan  9 14:12 pandaJob.out
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc    989377 Jan  9 14:13 agis_schedconf.cvmfs.json
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc   1516240 Jan  9 14:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:03:28] drwx------. 5 boinc boinc      4096 Jan  9 14:13 pilot3
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc 221065207 Jan  9 17:01 HITS.47898826._038827.pool.root.1
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc       531 Jan  9 17:01 boinc_task_state.xml
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc        95 Jan  9 17:02 pilot_heartbeat.json
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc      1012 Jan  9 17:02 memory_monitor_summary.json
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc    385784 Jan  9 17:02 log.47898826._038827.job.log.tgz.1
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc      7774 Jan  9 17:02 heartbeat.json
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc        28 Jan  9 17:02 wrapper_checkpoint.txt
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc      8192 Jan  9 17:02 boinc_mmap_file
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc      4809 Jan  9 17:03 pilotlog.txt
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc   1365525 Jan  9 17:03 log.47898826._038827.job.log.1
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc       357 Jan  9 17:03 output.list
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc       620 Jan  9 17:03 runtime_log
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc   1771520 Jan  9 17:03 result.tar.gz
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc      8817 Jan  9 17:03 runtime_log.err
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc       655 Jan  9 17:03 CTLKDmSCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1wgKDmGjJYan.diag
[2026-01-09 17:03:28] -rw-r--r--. 1 boinc boinc     20735 Jan  9 17:03 stderr.txt
[2026-01-09 17:03:28] HITS file was successfully produced:
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc 221065207 Jan  9 17:01 shared/HITS.pool.root.1
[2026-01-09 17:03:28]  *** Contents of shared directory: ***
[2026-01-09 17:03:28] total 435700
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc 222704907 Jan  9 14:12 ATLAS.root_0
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:12 start_atlas.sh
[2026-01-09 17:03:28] -rw-r--r--. 2 boinc boinc    592398 Jan  9 14:12 input.tar.gz
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc 221065207 Jan  9 17:01 HITS.pool.root.1
[2026-01-09 17:03:28] -rw-------. 1 boinc boinc   1771520 Jan  9 17:03 result.tar.gz
17:03:30 (22642): run_atlas exited; CPU time 75946.381430
17:03:30 (22642): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN