Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:14:15 (1075505): wrapper (7.7.26015): starting
18:14:15 (1075505): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 18:14:15] Arguments: --nthreads 3
[2026-01-09 18:14:15] Threads: 3
[2026-01-09 18:14:15] Checking for CVMFS
[2026-01-09 18:14:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:14:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:14:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:14:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:14:15] 2.9.2.0 474489 2524 89088 154951 1 56 16276700 36864000 0 130560 0 1617848 99.989 94691 3725 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:14:15] CVMFS is ok
[2026-01-09 18:14:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:14:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:14:15] Further information can be found at the LHC@home message board.
[2026-01-09 18:14:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:14:15] Checking for apptainer binary...
[2026-01-09 18:14:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:14:15] Running /usr/bin/apptainer --version
[2026-01-09 18:14:15] apptainer version 1.4.1-1.1
[2026-01-09 18:14:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:14:15] thA371
[2026-01-09 18:14:15] apptainer works
[2026-01-09 18:14:15] Set ATHENA_PROC_NUMBER=3
[2026-01-09 18:14:15] Set ATHENA_CORE_NUMBER=3
[2026-01-09 18:14:15] Starting ATLAS job with PandaID=6963190125
[2026-01-09 18:14:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:07:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | job 6963190125 has completed (purged errors)
[2026-01-09 20:07:35] 2026-01-09 19:06:45,250 | INFO     | overall cleanup function is called
[2026-01-09 20:07:35] 2026-01-09 19:06:46,257 | INFO     | --- collectZombieJob: --- 10, [1085663]
[2026-01-09 20:07:35] 2026-01-09 19:06:46,257 | INFO     | zombie collector waiting for pid 1085663
[2026-01-09 20:07:35] 2026-01-09 19:06:46,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:07:35] 2026-01-09 19:06:46,257 | INFO     | collected zombie processes
[2026-01-09 20:07:35] 2026-01-09 19:06:46,257 | INFO     | will attempt to kill all subprocesses of pid=1085663
[2026-01-09 20:07:35] 2026-01-09 19:06:46,300 | INFO     | process IDs to be killed: [1085663] (in reverse order)
[2026-01-09 20:07:35] 2026-01-09 19:06:46,324 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:07:35] 2026-01-09 19:06:46,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:07:35] 2026-01-09 19:06:46,325 | INFO     | did not find any defunct processes belonging to 1085663
[2026-01-09 20:07:35] 2026-01-09 19:06:46,326 | INFO     | did not find any defunct processes belonging to 1085663
[2026-01-09 20:07:35] 2026-01-09 19:06:46,326 | INFO     | ready for new job
[2026-01-09 20:07:35] 2026-01-09 19:06:46,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:07:35] 2026-01-09 19:06:46,327 | INFO     | ***************************************
[2026-01-09 20:07:35] 2026-01-09 19:06:46,327 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:07:35] 2026-01-09 19:06:46,327 | INFO     | ***************************************
[2026-01-09 20:07:35] 2026-01-09 19:06:46,327 | INFO     | 
[2026-01-09 20:07:35] 2026-01-09 19:06:46,328 | INFO     | architecture information:
[2026-01-09 20:07:35] 2026-01-09 19:06:46,328 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:07:35] 2026-01-09 19:06:46,336 | INFO     | cat /etc/os-release:
[2026-01-09 20:07:35] NAME="CentOS Linux"
[2026-01-09 20:07:35] VERSION="7 (Core)"
[2026-01-09 20:07:35] ID="centos"
[2026-01-09 20:07:35] ID_LIKE="rhel fedora"
[2026-01-09 20:07:35] VERSION_ID="7"
[2026-01-09 20:07:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:07:35] ANSI_COLOR="0;31"
[2026-01-09 20:07:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:07:35] HOME_URL="https://www.centos.org/"
[2026-01-09 20:07:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:07:35] 
[2026-01-09 20:07:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:07:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:07:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:07:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:07:35] 
[2026-01-09 20:07:35] 2026-01-09 19:06:46,336 | INFO     | ***************************************
[2026-01-09 20:07:35] 2026-01-09 19:06:46,840 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 20:07:35] 2026-01-09 19:06:46,852 | INFO     | sufficient remaining disk space (344247500800 B)
[2026-01-09 20:07:35] 2026-01-09 19:06:46,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | INFO     | update_server=False
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | INFO     | aborting loop
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:07:35] 2026-01-09 19:06:46,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:07:35] 2026-01-09 19:06:47,610 | INFO     | all data control threads have been joined
[2026-01-09 20:07:35] 2026-01-09 19:06:47,783 | INFO     | all job control threads have been joined
[2026-01-09 20:07:35] 2026-01-09 19:06:47,846 | INFO     | all payload control threads have been joined
[2026-01-09 20:07:35] 2026-01-09 19:06:47,858 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:47,859 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:47,859 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:48,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:07:35] 2026-01-09 19:06:48,401 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:48,615 | INFO     | [data] control thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:48,742 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:48,788 | INFO     | [job] control thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:48,852 | INFO     | [payload] control thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:49,233 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:49,269 | INFO     | [job] validate thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:49,300 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:49,301 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:49,435 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:50,100 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:50,859 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:06:57,603 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:07:35] 2026-01-09 19:06:58,608 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:07:35] 2026-01-09 19:07:16,397 | INFO     | PID=1079223 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:07:35] 2026-01-09 19:07:16,398 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:07:35] 2026-01-09 19:07:16,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:07:35] 2026-01-09 19:07:16,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:07:35] 2026-01-09 19:07:28,858 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:07:35] 2026-01-09 19:07:29,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140426456667968)>', '<ExcThread(monitor, started 140426182891264)>']
[2026-01-09 20:07:35] 2026-01-09 19:07:30,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:07:35] 2026-01-09 19:07:30,464 | INFO     | [monitor] control thread has ended
[2026-01-09 20:07:35] 2026-01-09 19:07:34,890 | INFO     | all workflow threads have been joined
[2026-01-09 20:07:35] 2026-01-09 19:07:34,890 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:07:35] 2026-01-09 19:07:34,890 | INFO     | traces error code: 0
[2026-01-09 20:07:35] 2026-01-09 19:07:34,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:07:35] 2026-01-09 19:07:34,940 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:07:35] 2026-01-09 19:07:34,942 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:07:35] 2026-01-09 19:07:34,945 [wrapper] pilotpid: 1079223
[2026-01-09 20:07:35] 2026-01-09 19:07:34,947 [wrapper] Pilot exit status: 0
[2026-01-09 20:07:35] 2026-01-09 19:07:34,954 [wrapper] pandaids: 6963190125
[2026-01-09 20:07:35] 2026-01-09 19:07:34,970 [wrapper] cleanup supervisor_pilot 1100058 1079224
[2026-01-09 20:07:35] 2026-01-09 19:07:34,972 [wrapper] Test setup, not cleaning
[2026-01-09 20:07:35] 2026-01-09 19:07:34,975 [wrapper] apfmon messages muted
[2026-01-09 20:07:35] 2026-01-09 19:07:34,977 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:07:35] 2026-01-09 19:07:34,979 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:07:35]  *** Error codes and diagnostics ***
[2026-01-09 20:07:35]     "exeErrorCode": 0,
[2026-01-09 20:07:35]     "exeErrorDiag": "",
[2026-01-09 20:07:35]     "pilotErrorCode": 0,
[2026-01-09 20:07:35]     "pilotErrorDiag": "",
[2026-01-09 20:07:35]  *** Listing of results directory ***
[2026-01-09 20:07:35] total 442616
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 20:07:35] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:07:35] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:14 run_atlas
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:14 job.xml
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc 224857037 Jan  9 18:14 EVNT.47898824._001487.pool.root.1
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc    592398 Jan  9 18:14 input.tar.gz
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:14 start_atlas.sh
[2026-01-09 20:07:35] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:14 shared
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:14 boinc_setup_complete
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc      6439 Jan  9 18:14 init_data.xml
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:14 boinc_lockfile
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc      2520 Jan  9 18:14 pandaJob.out
[2026-01-09 20:07:35] -rw------- 1 boinc boinc    989356 Jan  9 18:14 agis_schedconf.cvmfs.json
[2026-01-09 20:07:35] -rw------- 1 boinc boinc   1516240 Jan  9 18:14 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:07:35] drwx------ 5 boinc boinc      4096 Jan  9 18:14 pilot3
[2026-01-09 20:07:35] -rw------- 1 boinc boinc 221979076 Jan  9 20:06 HITS.47898826._038710.pool.root.1
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc       529 Jan  9 20:06 boinc_task_state.xml
[2026-01-09 20:07:35] -rw------- 1 boinc boinc      1018 Jan  9 20:06 memory_monitor_summary.json
[2026-01-09 20:07:35] -rw------- 1 boinc boinc    276533 Jan  9 20:06 log.47898826._038710.job.log.tgz.1
[2026-01-09 20:07:35] -rw------- 1 boinc boinc      7760 Jan  9 20:06 heartbeat.json
[2026-01-09 20:07:35] -rw------- 1 boinc boinc        95 Jan  9 20:07 pilot_heartbeat.json
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc        27 Jan  9 20:07 wrapper_checkpoint.txt
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:07 boinc_mmap_file
[2026-01-09 20:07:35] -rw------- 1 boinc boinc      4824 Jan  9 20:07 pilotlog.txt
[2026-01-09 20:07:35] -rw------- 1 boinc boinc    974311 Jan  9 20:07 log.47898826._038710.job.log.1
[2026-01-09 20:07:35] -rw------- 1 boinc boinc       357 Jan  9 20:07 output.list
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:07 runtime_log
[2026-01-09 20:07:35] -rw------- 1 boinc boinc   1269760 Jan  9 20:07 result.tar.gz
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc      8897 Jan  9 20:07 runtime_log.err
[2026-01-09 20:07:35] -rw------- 1 boinc boinc       659 Jan  9 20:07 XjKNDmRCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGwgKDms8m9lm.diag
[2026-01-09 20:07:35] -rw-r--r-- 1 boinc boinc     11305 Jan  9 20:07 stderr.txt
[2026-01-09 20:07:35] HITS file was successfully produced:
[2026-01-09 20:07:35] -rw------- 1 boinc boinc 221979076 Jan  9 20:06 shared/HITS.pool.root.1
[2026-01-09 20:07:35]  *** Contents of shared directory: ***
[2026-01-09 20:07:35] total 438212
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc 224857037 Jan  9 18:14 ATLAS.root_0
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc    592398 Jan  9 18:14 input.tar.gz
[2026-01-09 20:07:35] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:14 start_atlas.sh
[2026-01-09 20:07:35] -rw------- 1 boinc boinc 221979076 Jan  9 20:06 HITS.pool.root.1
[2026-01-09 20:07:35] -rw------- 1 boinc boinc   1269760 Jan  9 20:07 result.tar.gz
20:07:36 (1075505): run_atlas exited; CPU time 19594.713412
20:07:36 (1075505): called boinc_finish(0)

</stderr_txt>
]]>

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