Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:07 (7822): wrapper (7.7.26015): starting
14:22:07 (7822): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:22:07] Arguments: --nthreads 8
[2026-01-09 14:22:07] Threads: 8
[2026-01-09 14:22:07] Checking for CVMFS
[2026-01-09 14:22:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:22:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:22:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:22:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:22:08] 2.11.2.0 24663 35471 90460 154945 2 56 17211555 25165824 0 130560 0 16226321 99.814 11207046 2782 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 14:22:08] CVMFS is ok
[2026-01-09 14:22:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:22:08] Checking for apptainer binary...
[2026-01-09 14:22:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:22:08] Running /usr/bin/apptainer --version
[2026-01-09 14:22:08] apptainer version 1.3.2-1.el7
[2026-01-09 14:22:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:22:09] cg-vwn475.simple-grid.lan
[2026-01-09 14:22:09] apptainer works
[2026-01-09 14:22:09] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:22:09] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:22:09] Starting ATLAS job with PandaID=6963189267
[2026-01-09 14:22:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:54:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:54:45] 2026-01-09 15:54:04,686 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 16:54:45] 2026-01-09 15:54:04,687 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 16:54:45] 2026-01-09 15:54:04,689 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6963189267/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,690 | INFO     | extracted standard info from prmon json
[2026-01-09 16:54:45] 2026-01-09 15:54:04,690 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 16:54:45] 2026-01-09 15:54:04,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 16:54:45] 2026-01-09 15:54:04,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 16:54:45] 2026-01-09 15:54:04,691 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 16:54:45] 2026-01-09 15:54:04,694 | INFO     | fitting pss+swap vs Time
[2026-01-09 16:54:45] 2026-01-09 15:54:04,694 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,695 | INFO     | sum of deviations: -19820981990.999992
[2026-01-09 16:54:45] 2026-01-09 15:54:04,695 | INFO     | mean x: 1767969494.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,696 | INFO     | mean y: 2537925.9932885906
[2026-01-09 16:54:45] 2026-01-09 15:54:04,696 | INFO     | intersect: 34167604172.831585
[2026-01-09 16:54:45] 2026-01-09 15:54:04,696 | INFO     | chi2: 2.4967709386617214
[2026-01-09 16:54:45] 2026-01-09 15:54:04,696 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,697 | INFO     | sum of deviations: -8804491852.000002
[2026-01-09 16:54:45] 2026-01-09 15:54:04,697 | INFO     | mean x: 1767969341.5
[2026-01-09 16:54:45] 2026-01-09 15:54:04,698 | INFO     | mean y: 2554347.1805555555
[2026-01-09 16:54:45] 2026-01-09 15:54:04,698 | INFO     | intersect: 16815122959.741934
[2026-01-09 16:54:45] 2026-01-09 15:54:04,698 | INFO     | chi2: 1.733766580762754
[2026-01-09 16:54:45] 2026-01-09 15:54:04,698 | INFO     | current chi2=1.733766580762754 (change=30.559645904399247 %)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,698 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,699 | INFO     | sum of deviations: -7777569479.000005
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | mean x: 1767969189.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | mean y: 2556029.338129496
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | intersect: 16515261904.386852
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | chi2: 1.734299258234518
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | current chi2=1.734299258234518 (change=-0.030723713196135767 %)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,700 | INFO     | right removable region: 138
[2026-01-09 16:54:45] 2026-01-09 15:54:04,701 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,701 | INFO     | sum of deviations: -42872787075.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,702 | INFO     | mean x: 1767969646.5
[2026-01-09 16:54:45] 2026-01-09 15:54:04,702 | INFO     | mean y: 2572598.888888889
[2026-01-09 16:54:45] 2026-01-09 15:54:04,702 | INFO     | intersect: 81870079636.79204
[2026-01-09 16:54:45] 2026-01-09 15:54:04,702 | INFO     | chi2: 0.9756116485636818
[2026-01-09 16:54:45] 2026-01-09 15:54:04,702 | INFO     | current chi2=0.9756116485636818 (change=60.92506391128482 %)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,703 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,703 | INFO     | sum of deviations: -43751532579.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | mean x: 1767969799.0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | mean y: 2573950.18705036
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | intersect: 92892318012.05595
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | chi2: 0.9318595522328361
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | current chi2=0.9318595522328361 (change=4.484581174820791 %)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,704 | INFO     | left removable region: 20
[2026-01-09 16:54:45] 2026-01-09 15:54:04,705 | INFO     | sum of square deviations: 509440249.5
[2026-01-09 16:54:45] 2026-01-09 15:54:04,705 | INFO     | sum of deviations: -24196237887.500004
[2026-01-09 16:54:45] 2026-01-09 15:54:04,706 | INFO     | mean x: 1767969768.5
[2026-01-09 16:54:45] 2026-01-09 15:54:04,706 | INFO     | mean y: 2582990.4491525423
[2026-01-09 16:54:45] 2026-01-09 15:54:04,706 | INFO     | intersect: 83973602434.86845
[2026-01-09 16:54:45] 2026-01-09 15:54:04,706 | INFO     | chi2: 0.1218075135287927
[2026-01-09 16:54:45] 2026-01-09 15:54:04,707 | INFO     | current memory leak: -47.50 B/s (using 118 data points, chi2=0.12)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,707 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,707 | INFO     | ..............................
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . Timing measurements:
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . get job = 0 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . initial setup = 2 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . payload setup = 8 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . stage-in = 0 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . payload execution = 9063 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . stage-out = 1 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,708 | INFO     | . log creation = 0 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,709 | INFO     | ..............................
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | 
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | job summary report
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | --------------------------------------------------
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | PanDA job id: 6963189267
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | task id: 47898826
[2026-01-09 16:54:45] 2026-01-09 15:54:04,820 | INFO     | errors: (none)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | pilot state: finished 
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | transexitcode: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | exeerrorcode: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | exeerrordiag: 
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | exitcode: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | exitmsg: OK
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | cpuconsumptiontime: 68429 s
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | nevents: 400
[2026-01-09 16:54:45] 2026-01-09 15:54:04,821 | INFO     | neventsw: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | pid: 17975
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | pgrp: 17975
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | corecount: 8
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | event service: False
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | sizes: {0: 2283745, 1: 2284000, 7: 2284262, 12: 2284290, 9075: 2312142, 9076: 2321326, 9082: 2321464}
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | --------------------------------------------------
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | 
[2026-01-09 16:54:45] 2026-01-09 15:54:04,822 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-01-09 16:54:45] 2026-01-09 15:54:04,849 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,850 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,851 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,852 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:54:45] 2026-01-09 15:54:04,852 | INFO     | job 6963189267 has completed (purged errors)
[2026-01-09 16:54:45] 2026-01-09 15:54:04,852 | INFO     | overall cleanup function is called
[2026-01-09 16:54:45] 2026-01-09 15:54:05,860 | INFO     | --- collectZombieJob: --- 10, [17975]
[2026-01-09 16:54:45] 2026-01-09 15:54:05,860 | INFO     | zombie collector waiting for pid 17975
[2026-01-09 16:54:45] 2026-01-09 15:54:05,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:54:45] 2026-01-09 15:54:05,861 | INFO     | collected zombie processes
[2026-01-09 16:54:45] 2026-01-09 15:54:05,861 | INFO     | will attempt to kill all subprocesses of pid=17975
[2026-01-09 16:54:45] 2026-01-09 15:54:05,924 | INFO     | process IDs to be killed: [17975] (in reverse order)
[2026-01-09 16:54:45] 2026-01-09 15:54:05,971 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:54:45] 2026-01-09 15:54:05,971 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:54:45] 2026-01-09 15:54:05,973 | INFO     | did not find any defunct processes belonging to 17975
[2026-01-09 16:54:45] 2026-01-09 15:54:05,974 | INFO     | did not find any defunct processes belonging to 17975
[2026-01-09 16:54:45] 2026-01-09 15:54:05,975 | INFO     | ready for new job
[2026-01-09 16:54:45] 2026-01-09 15:54:05,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:54:45] 2026-01-09 15:54:05,976 | INFO     | ***************************************
[2026-01-09 16:54:45] 2026-01-09 15:54:05,977 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:54:45] 2026-01-09 15:54:05,977 | INFO     | ***************************************
[2026-01-09 16:54:45] 2026-01-09 15:54:05,977 | INFO     | 
[2026-01-09 16:54:45] 2026-01-09 15:54:05,977 | INFO     | pilot is running in a VM
[2026-01-09 16:54:45] 2026-01-09 15:54:05,978 | INFO     | architecture information:
[2026-01-09 16:54:45] 2026-01-09 15:54:05,978 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:54:45] 2026-01-09 15:54:05,998 | INFO     | cat /etc/os-release:
[2026-01-09 16:54:45] NAME="CentOS Linux"
[2026-01-09 16:54:45] VERSION="7 (Core)"
[2026-01-09 16:54:45] ID="centos"
[2026-01-09 16:54:45] ID_LIKE="rhel fedora"
[2026-01-09 16:54:45] VERSION_ID="7"
[2026-01-09 16:54:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:54:45] ANSI_COLOR="0;31"
[2026-01-09 16:54:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:54:45] HOME_URL="https://www.centos.org/"
[2026-01-09 16:54:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:54:45] 
[2026-01-09 16:54:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:54:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:54:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:54:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:54:45] 
[2026-01-09 16:54:45] 2026-01-09 15:54:05,999 | INFO     | ***************************************
[2026-01-09 16:54:45] 2026-01-09 15:54:06,502 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-01-09 16:54:45] 2026-01-09 15:54:06,527 | INFO     | sufficient remaining disk space (498281218048 B)
[2026-01-09 16:54:45] 2026-01-09 15:54:06,528 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:54:45] 2026-01-09 15:54:06,528 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:54:45] 2026-01-09 15:54:06,528 | INFO     | update_server=False
[2026-01-09 16:54:45] 2026-01-09 15:54:06,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:54:45] 2026-01-09 15:54:06,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:54:45] 2026-01-09 15:54:06,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:54:45] 2026-01-09 15:54:06,802 | INFO     | all job control threads have been joined
[2026-01-09 16:54:45] 2026-01-09 15:54:06,953 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 16:54:45] 2026-01-09 15:54:06,953 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 16:54:45] 2026-01-09 15:54:06,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:54:45] 2026-01-09 15:54:06,953 | INFO     | will abort loop
[2026-01-09 16:54:45] 2026-01-09 15:54:07,528 | INFO     | all data control threads have been joined
[2026-01-09 16:54:45] 2026-01-09 15:54:07,531 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,534 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,766 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,795 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,807 | INFO     | [job] control thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,904 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:07,936 | INFO     | all payload control threads have been joined
[2026-01-09 16:54:45] 2026-01-09 15:54:07,959 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,200 | INFO     | [job] validate thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,305 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,532 | INFO     | [data] control thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,535 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,569 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,721 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:08,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:54:45] 2026-01-09 15:54:08,942 | INFO     | [payload] control thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:09,128 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:12,880 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:54:45] 2026-01-09 15:54:37,041 | INFO     | PID=11541 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 16:54:45] 2026-01-09 15:54:37,042 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:54:45] 2026-01-09 15:54:37,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:54:45] 2026-01-09 15:54:37,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:54:45] 2026-01-09 15:54:40,054 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:54:45] 2026-01-09 15:54:40,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359127938880)>', '<ExcThread(monitor, started 140358683961088)>']
[2026-01-09 16:54:45] 2026-01-09 15:54:41,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:54:45] 2026-01-09 15:54:41,056 | INFO     | [monitor] control thread has ended
[2026-01-09 16:54:45] 2026-01-09 15:54:45,263 | INFO     | all workflow threads have been joined
[2026-01-09 16:54:45] 2026-01-09 15:54:45,264 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:54:45] 2026-01-09 15:54:45,264 | INFO     | traces error code: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:45,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:54:45] 2026-01-09 15:54:45,430 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:54:45] 2026-01-09 15:54:45,442 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:54:45] 2026-01-09 15:54:45,450 [wrapper] pilotpid: 11541
[2026-01-09 16:54:45] 2026-01-09 15:54:45,453 [wrapper] Pilot exit status: 0
[2026-01-09 16:54:45] 2026-01-09 15:54:45,475 [wrapper] pandaids: 6963189267
[2026-01-09 16:54:45] 2026-01-09 15:54:45,506 [wrapper] cleanup supervisor_pilot  2082 11542
[2026-01-09 16:54:45] 2026-01-09 15:54:45,513 [wrapper] Test setup, not cleaning
[2026-01-09 16:54:45] 2026-01-09 15:54:45,520 [wrapper] apfmon messages muted
[2026-01-09 16:54:45] 2026-01-09 15:54:45,524 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:54:45] 2026-01-09 15:54:45,527 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:54:45]  *** Error codes and diagnostics ***
[2026-01-09 16:54:45]     "exeErrorCode": 0,
[2026-01-09 16:54:45]     "exeErrorDiag": "",
[2026-01-09 16:54:45]     "pilotErrorCode": 0,
[2026-01-09 16:54:45]     "pilotErrorDiag": "",
[2026-01-09 16:54:45]  *** Listing of results directory ***
[2026-01-09 16:54:45] total 437356
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 16:54:45] -rwx------. 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc       100 Jan  9 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:54:45] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 14:22 run_atlas
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc       105 Jan  9 14:22 job.xml
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc 222234258 Jan  9 14:22 EVNT.47898824._001464.pool.root.1
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:22 start_atlas.sh
[2026-01-09 16:54:45] drwxrwx--x. 2 boinc boinc        68 Jan  9 14:22 shared
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc    592402 Jan  9 14:22 input.tar.gz
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc      6390 Jan  9 14:22 init_data.xml
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc         0 Jan  9 14:22 boinc_lockfile
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc      2520 Jan  9 14:22 pandaJob.out
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc    989377 Jan  9 14:22 agis_schedconf.cvmfs.json
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc   1516240 Jan  9 14:22 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:54:45] drwx------. 5 boinc boinc      4096 Jan  9 14:22 pilot3
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc 218478698 Jan  9 16:53 HITS.47898826._038149.pool.root.1
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc       529 Jan  9 16:53 boinc_task_state.xml
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc      1015 Jan  9 16:53 memory_monitor_summary.json
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc    399480 Jan  9 16:53 log.47898826._038149.job.log.tgz.1
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc      7772 Jan  9 16:54 heartbeat.json
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc        27 Jan  9 16:54 wrapper_checkpoint.txt
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc      8192 Jan  9 16:54 boinc_mmap_file
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc        95 Jan  9 16:54 pilot_heartbeat.json
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc      4996 Jan  9 16:54 pilotlog.txt
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc   1224151 Jan  9 16:54 log.47898826._038149.job.log.1
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc       357 Jan  9 16:54 output.list
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc       620 Jan  9 16:54 runtime_log
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc   1638400 Jan  9 16:54 result.tar.gz
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc      8832 Jan  9 16:54 runtime_log.err
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc       652 Jan  9 16:54 ILyMDmECJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG9lKDmUSKaRo.diag
[2026-01-09 16:54:45] -rw-r--r--. 1 boinc boinc     20717 Jan  9 16:54 stderr.txt
[2026-01-09 16:54:45] HITS file was successfully produced:
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc 218478698 Jan  9 16:53 shared/HITS.pool.root.1
[2026-01-09 16:54:45]  *** Contents of shared directory: ***
[2026-01-09 16:54:45] total 432584
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc 222234258 Jan  9 14:22 ATLAS.root_0
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:22 start_atlas.sh
[2026-01-09 16:54:45] -rw-r--r--. 2 boinc boinc    592402 Jan  9 14:22 input.tar.gz
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc 218478698 Jan  9 16:53 HITS.pool.root.1
[2026-01-09 16:54:45] -rw-------. 1 boinc boinc   1638400 Jan  9 16:54 result.tar.gz
16:54:46 (7822): run_atlas exited; CPU time 68483.445229
16:54:46 (7822): called boinc_finish(0)

</stderr_txt>
]]>

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