Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:21:02 (1059310): wrapper (7.7.26015): starting
05:21:02 (1059310): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 05:21:02] Arguments: --nthreads 9
[2026-01-09 05:21:02] Threads: 9
[2026-01-09 05:21:02] Checking for CVMFS
[2026-01-09 05:21:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:21:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:21:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:21:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:21:04] 2.13.3.0 7542 22750 155444 154940 3 61 28027104 40960001 15552 16776704 0 36902889 99.780 23956312 44869 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 05:21:04] CVMFS is ok
[2026-01-09 05:21:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:21:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:21:04] Further information can be found at the LHC@home message board.
[2026-01-09 05:21:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:21:04] Checking for apptainer binary...
[2026-01-09 05:21:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:21:04] Running /usr/bin/apptainer --version
[2026-01-09 05:21:04] apptainer version 1.4.5-2.el9
[2026-01-09 05:21:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:21:05] c-212-6.aglt2.org
[2026-01-09 05:21:05] apptainer works
[2026-01-09 05:21:05] Set ATHENA_PROC_NUMBER=9
[2026-01-09 05:21:05] Set ATHENA_CORE_NUMBER=9
[2026-01-09 05:21:06] Starting ATLAS job with PandaID=6963149051
[2026-01-09 05:21:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:07:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:07:32] 2026-01-09 18:06:21,132 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963149051/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,133 | INFO     | extracted standard info from prmon json
[2026-01-09 13:07:32] 2026-01-09 18:06:21,133 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:07:32] 2026-01-09 18:06:21,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:07:32] 2026-01-09 18:06:21,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:07:32] 2026-01-09 18:06:21,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:07:32] 2026-01-09 18:06:21,192 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:07:32] 2026-01-09 18:06:21,193 | INFO     | sum of square deviations: 29208761406.628483
[2026-01-09 13:07:32] 2026-01-09 18:06:21,218 | INFO     | sum of deviations: 86189857235.59996
[2026-01-09 13:07:32] 2026-01-09 18:06:21,219 | INFO     | mean x: 1767968093.0285714
[2026-01-09 13:07:32] 2026-01-09 18:06:21,219 | INFO     | mean y: 2514429.5692307693
[2026-01-09 13:07:32] 2026-01-09 18:06:21,219 | INFO     | intersect: -5214444804.472372
[2026-01-09 13:07:32] 2026-01-09 18:06:21,231 | INFO     | chi2: 6.29192300175189
[2026-01-09 13:07:32] 2026-01-09 18:06:21,232 | INFO     | sum of square deviations: 28256384724.124397
[2026-01-09 13:07:32] 2026-01-09 18:06:21,293 | INFO     | sum of deviations: 201535999564.7333
[2026-01-09 13:07:32] 2026-01-09 18:06:21,294 | INFO     | mean x: 1767967940.528889
[2026-01-09 13:07:32] 2026-01-09 18:06:21,294 | INFO     | mean y: 2532858.3666666667
[2026-01-09 13:07:32] 2026-01-09 18:06:21,294 | INFO     | intersect: -12607331764.147736
[2026-01-09 13:07:32] 2026-01-09 18:06:21,294 | INFO     | chi2: 3.511080866640063
[2026-01-09 13:07:32] 2026-01-09 18:06:21,294 | INFO     | current chi2=3.511080866640063 (change=44.19701471771895 %)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,295 | INFO     | sum of square deviations: 27324911459.67649
[2026-01-09 13:07:32] 2026-01-09 18:06:21,362 | INFO     | sum of deviations: 198848993915.84952
[2026-01-09 13:07:32] 2026-01-09 18:06:21,363 | INFO     | mean x: 1767967788.0269663
[2026-01-09 13:07:32] 2026-01-09 18:06:21,424 | INFO     | mean y: 2532418.4292134834
[2026-01-09 13:07:32] 2026-01-09 18:06:21,424 | INFO     | intersect: -12863332360.07479
[2026-01-09 13:07:32] 2026-01-09 18:06:21,425 | INFO     | chi2: 3.511714528949282
[2026-01-09 13:07:32] 2026-01-09 18:06:21,425 | INFO     | current chi2=3.511714528949282 (change=-0.01804749970984047 %)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,425 | INFO     | right removable region: 444
[2026-01-09 13:07:32] 2026-01-09 18:06:21,425 | INFO     | sum of square deviations: 28256376794.124405
[2026-01-09 13:07:32] 2026-01-09 18:06:21,507 | INFO     | sum of deviations: -46316908406.96889
[2026-01-09 13:07:32] 2026-01-09 18:06:21,507 | INFO     | mean x: 1767968245.528889
[2026-01-09 13:07:32] 2026-01-09 18:06:21,507 | INFO     | mean y: 2535623.382222222
[2026-01-09 13:07:32] 2026-01-09 18:06:21,507 | INFO     | intersect: 2900530079.3316655
[2026-01-09 13:07:32] 2026-01-09 18:06:21,508 | INFO     | chi2: 3.274598673110951
[2026-01-09 13:07:32] 2026-01-09 18:06:21,508 | INFO     | current chi2=3.274598673110951 (change=47.95551896933276 %)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,508 | INFO     | sum of square deviations: 27324922806.62009
[2026-01-09 13:07:32] 2026-01-09 18:06:21,517 | INFO     | sum of deviations: -86894829742.66965
[2026-01-09 13:07:32] 2026-01-09 18:06:21,517 | INFO     | mean x: 1767968398.0292134
[2026-01-09 13:07:32] 2026-01-09 18:06:21,517 | INFO     | mean y: 2542249.743820225
[2026-01-09 13:07:32] 2026-01-09 18:06:21,518 | INFO     | intersect: 5624783674.702179
[2026-01-09 13:07:32] 2026-01-09 18:06:21,540 | INFO     | chi2: 2.9445622921608963
[2026-01-09 13:07:32] 2026-01-09 18:06:21,540 | INFO     | current chi2=2.9445622921608963 (change=10.078681814053017 %)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,540 | INFO     | left removable region: 20
[2026-01-09 13:07:32] 2026-01-09 18:06:21,541 | INFO     | sum of square deviations: 23636121411.660404
[2026-01-09 13:07:32] 2026-01-09 18:06:21,563 | INFO     | sum of deviations: 2454775659.433964
[2026-01-09 13:07:32] 2026-01-09 18:06:21,563 | INFO     | mean x: 1767968367.528302
[2026-01-09 13:07:32] 2026-01-09 18:06:21,563 | INFO     | mean y: 2565620.047169811
[2026-01-09 13:07:32] 2026-01-09 18:06:21,563 | INFO     | intersect: -181050195.7489295
[2026-01-09 13:07:32] 2026-01-09 18:06:21,564 | INFO     | chi2: 0.03383893430420846
[2026-01-09 13:07:32] 2026-01-09 18:06:21,564 | INFO     | current memory leak: 0.10 B/s (using 424 data points, chi2=0.03)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,564 | INFO     | could have reported an average CPU frequency of 3161 MHz (19 samples)
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | ..............................
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . Timing measurements:
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . get job = 0 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . initial setup = 7 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . payload setup = 35 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . stage-in = 0 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . payload execution = 27719 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . stage-out = 4 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | . log creation = 0 s
[2026-01-09 13:07:32] 2026-01-09 18:06:21,565 | INFO     | ..............................
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | 
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | job summary report
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | --------------------------------------------------
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | PanDA job id: 6963149051
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | task id: 47898826
[2026-01-09 13:07:32] 2026-01-09 18:06:22,047 | INFO     | errors: (none)
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | pilot state: finished 
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | transexitcode: 0
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | exeerrorcode: 0
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | exeerrordiag: 
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | exitcode: 0
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | exitmsg: OK
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | cpuconsumptiontime: 43999 s
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | nevents: 400
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | neventsw: 0
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | pid: 1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | pgrp: 1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | corecount: 9
[2026-01-09 13:07:32] 2026-01-09 18:06:22,048 | INFO     | event service: False
[2026-01-09 13:07:32] 2026-01-09 18:06:22,049 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 13: 2284025, 24: 2284081, 27: 2284371, 35: 2284527, 27760: 2321325, 27761: 2321324, 27767: 2330434, 27794: 2330572}
[2026-01-09 13:07:32] 2026-01-09 18:06:22,049 | INFO     | --------------------------------------------------
[2026-01-09 13:07:32] 2026-01-09 18:06:22,049 | INFO     | 
[2026-01-09 13:07:32] 2026-01-09 18:06:22,049 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 13:07:32] 2026-01-09 18:06:22,136 | INFO     | time since job start (27846s) is within the limit (349056.0s)
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,195 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:07:32] 2026-01-09 18:06:22,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,196 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:07:32] 2026-01-09 18:06:22,196 | INFO     | job 6963149051 has completed (purged errors)
[2026-01-09 13:07:32] 2026-01-09 18:06:22,196 | INFO     | overall cleanup function is called
[2026-01-09 13:07:32] 2026-01-09 18:06:23,208 | INFO     | --- collectZombieJob: --- 10, [1073347]
[2026-01-09 13:07:32] 2026-01-09 18:06:23,208 | INFO     | zombie collector waiting for pid 1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:23,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:07:32] 2026-01-09 18:06:23,208 | INFO     | collected zombie processes
[2026-01-09 13:07:32] 2026-01-09 18:06:23,208 | INFO     | will attempt to kill all subprocesses of pid=1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:24,200 | INFO     | process IDs to be killed: [1073347] (in reverse order)
[2026-01-09 13:07:32] 2026-01-09 18:06:24,866 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:07:32] 2026-01-09 18:06:24,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:07:32] 2026-01-09 18:06:24,940 | INFO     | did not find any defunct processes belonging to 1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:25,019 | INFO     | did not find any defunct processes belonging to 1073347
[2026-01-09 13:07:32] 2026-01-09 18:06:25,019 | INFO     | ready for new job
[2026-01-09 13:07:32] 2026-01-09 18:06:25,019 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:07:32] 2026-01-09 18:06:25,022 | INFO     | ***************************************
[2026-01-09 13:07:32] 2026-01-09 18:06:25,037 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:07:32] 2026-01-09 18:06:25,037 | INFO     | ***************************************
[2026-01-09 13:07:32] 2026-01-09 18:06:25,037 | INFO     | 
[2026-01-09 13:07:32] 2026-01-09 18:06:25,062 | INFO     | architecture information:
[2026-01-09 13:07:32] 2026-01-09 18:06:25,070 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:07:32] 2026-01-09 18:06:25,258 | INFO     | cat /etc/os-release:
[2026-01-09 13:07:32] NAME="CentOS Linux"
[2026-01-09 13:07:32] VERSION="7 (Core)"
[2026-01-09 13:07:32] ID="centos"
[2026-01-09 13:07:32] ID_LIKE="rhel fedora"
[2026-01-09 13:07:32] VERSION_ID="7"
[2026-01-09 13:07:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:07:32] ANSI_COLOR="0;31"
[2026-01-09 13:07:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:07:32] HOME_URL="https://www.centos.org/"
[2026-01-09 13:07:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:07:32] 
[2026-01-09 13:07:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:07:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:07:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:07:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:07:32] 
[2026-01-09 13:07:32] 2026-01-09 18:06:25,258 | INFO     | ***************************************
[2026-01-09 13:07:32] 2026-01-09 18:06:25,768 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 13:07:32] 2026-01-09 18:06:25,854 | INFO     | sufficient remaining disk space (127092654080 B)
[2026-01-09 13:07:32] 2026-01-09 18:06:25,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:07:32] 2026-01-09 18:06:25,855 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:07:32] 2026-01-09 18:06:25,855 | INFO     | update_server=False
[2026-01-09 13:07:32] 2026-01-09 18:06:25,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:07:32] 2026-01-09 18:06:25,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:07:32] 2026-01-09 18:06:26,147 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 13:07:32] 2026-01-09 18:06:26,147 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 13:07:32] 2026-01-09 18:06:26,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:07:32] 2026-01-09 18:06:26,147 | INFO     | will abort loop
[2026-01-09 13:07:32] 2026-01-09 18:06:26,626 | INFO     | all payload control threads have been joined
[2026-01-09 13:07:32] 2026-01-09 18:06:26,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:07:32] 2026-01-09 18:06:26,861 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:26,865 | INFO     | all data control threads have been joined
[2026-01-09 13:07:32] 2026-01-09 18:06:26,937 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,009 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,030 | INFO     | all job control threads have been joined
[2026-01-09 13:07:32] 2026-01-09 18:06:27,153 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,157 | INFO     | [job] validate thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,191 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,253 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,394 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,632 | INFO     | [payload] control thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,829 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,867 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,871 | INFO     | [data] control thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:27,897 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:28,036 | INFO     | [job] control thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:28,052 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:28,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:07:32] 2026-01-09 18:06:32,472 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:07:32] 2026-01-09 18:06:56,630 | INFO     | PID=1064773 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:07:32] 2026-01-09 18:06:56,630 | INFO     | .. there are 17 such processes running
[2026-01-09 13:07:32] 2026-01-09 18:06:56,631 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:07:32] 2026-01-09 18:06:56,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:07:32] 2026-01-09 18:06:56,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:07:32] 2026-01-09 18:07:03,925 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:07:32] 2026-01-09 18:07:04,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043299727168)>', '<ExcThread(monitor, started 140042953541376)>']
[2026-01-09 13:07:32] 2026-01-09 18:07:05,159 [wrapper] supervise_pilot (15 min periods counter: 32)
[2026-01-09 13:07:32] 2026-01-09 18:07:05,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:07:32] 2026-01-09 18:07:05,704 | INFO     | [monitor] control thread has ended
[2026-01-09 13:07:32] 2026-01-09 18:07:09,977 | INFO     | all workflow threads have been joined
[2026-01-09 13:07:32] 2026-01-09 18:07:09,977 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:07:32] 2026-01-09 18:07:09,977 | INFO     | traces error code: 0
[2026-01-09 13:07:32] 2026-01-09 18:07:09,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:07:32] 2026-01-09 18:07:10,314 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:07:32] 2026-01-09 18:07:10,316 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:07:32] 2026-01-09 18:07:10,319 [wrapper] pilotpid: 1064773
[2026-01-09 13:07:32] 2026-01-09 18:07:10,321 [wrapper] Pilot exit status: 0
[2026-01-09 13:07:32] 2026-01-09 18:07:10,456 [wrapper] pandaids: 6963149051
[2026-01-09 13:07:32] 2026-01-09 18:07:11,254 [wrapper] cleanup supervisor_pilot 2039445 1064774
[2026-01-09 13:07:32] 2026-01-09 18:07:11,408 [wrapper] Test setup, not cleaning
[2026-01-09 13:07:32] 2026-01-09 18:07:11,425 [wrapper] apfmon messages muted
[2026-01-09 13:07:32] 2026-01-09 18:07:11,437 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:07:32] 2026-01-09 18:07:11,444 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:07:32]  *** Error codes and diagnostics ***
[2026-01-09 13:07:32]     "exeErrorCode": 0,
[2026-01-09 13:07:32]     "exeErrorDiag": "",
[2026-01-09 13:07:32]     "pilotErrorCode": 0,
[2026-01-09 13:07:32]     "pilotErrorDiag": "",
[2026-01-09 13:07:32]  *** Listing of results directory ***
[2026-01-09 13:07:32] total 449432
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:02 queuedata.json
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 13:07:32] -rwx------. 1 boincer umatlas     36322 Jan  8 11:02 runpilot2-wrapper.sh
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas       100 Jan  9 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:07:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 05:21 run_atlas
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas       105 Jan  9 05:21 job.xml
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas 225528431 Jan  9 05:21 EVNT.47898824._001121.pool.root.1
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 05:21 start_atlas.sh
[2026-01-09 13:07:32] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 05:21 shared
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 05:21 input.tar.gz
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas         0 Jan  9 05:21 boinc_lockfile
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 05:21 pandaJob.out
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas        57 Jan  9 05:21 setup.sh.local
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas    989369 Jan  9 05:22 agis_schedconf.cvmfs.json
[2026-01-09 13:07:32] drwx------. 5 boincer umatlas      4096 Jan  9 05:22 pilot3
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas 222350903 Jan  9 13:01 HITS.47898826._028399.pool.root.1
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas       530 Jan  9 13:02 boinc_task_state.xml
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas      6956 Jan  9 13:03 init_data.xml
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas      1055 Jan  9 13:05 memory_monitor_summary.json
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:05 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas    637577 Jan  9 13:05 log.47898826._028399.job.log.tgz.1
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas      7794 Jan  9 13:06 heartbeat.json
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas        95 Jan  9 13:06 pilot_heartbeat.json
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas      5011 Jan  9 13:07 pilotlog.txt
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas   3572044 Jan  9 13:07 log.47898826._028399.job.log.1
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas       357 Jan  9 13:07 output.list
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:07 runtime_log
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas   4229120 Jan  9 13:07 result.tar.gz
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 13:07 runtime_log.err
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas       659 Jan  9 13:07 QI4MDm5d7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsdfKDmid1UXo.diag
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:07 boinc_mmap_file
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas        28 Jan  9 13:07 wrapper_checkpoint.txt
[2026-01-09 13:07:32] -rw-r--r--. 1 boincer umatlas     21193 Jan  9 13:07 stderr.txt
[2026-01-09 13:07:32] HITS file was successfully produced:
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas 222350903 Jan  9 13:01 shared/HITS.pool.root.1
[2026-01-09 13:07:32]  *** Contents of shared directory: ***
[2026-01-09 13:07:32] total 442120
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas 225528431 Jan  9 05:21 ATLAS.root_0
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 05:21 start_atlas.sh
[2026-01-09 13:07:32] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 05:21 input.tar.gz
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas 222350903 Jan  9 13:01 HITS.pool.root.1
[2026-01-09 13:07:32] -rw-------. 1 boincer umatlas   4229120 Jan  9 13:07 result.tar.gz
13:07:34 (1059310): run_atlas exited; CPU time 44928.103223
13:07:34 (1059310): called boinc_finish(0)

</stderr_txt>
]]>

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