Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:54:02 (18232): wrapper (7.7.26015): starting
04:54:02 (18232): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 04:54:02] Arguments: --nthreads 8
[2026-01-09 04:54:02] Threads: 8
[2026-01-09 04:54:02] Checking for CVMFS
[2026-01-09 04:54:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:54:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:54:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:54:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:54:02] 2.11.2.0 4697 180870 138100 154938 3 59 16427211 18432001 1833 130560 0 121502738 99.979 7057948 34187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 04:54:02] CVMFS is ok
[2026-01-09 04:54:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:54:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:54:02] Further information can be found at the LHC@home message board.
[2026-01-09 04:54:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:54:02] Checking for apptainer binary...
[2026-01-09 04:54:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:54:02] Running /usr/bin/apptainer --version
[2026-01-09 04:54:03] apptainer version 1.3.2-1.el7
[2026-01-09 04:54:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:54:03] c-206-21.aglt2.org
[2026-01-09 04:54:03] apptainer works
[2026-01-09 04:54:03] Set ATHENA_PROC_NUMBER=8
[2026-01-09 04:54:03] Set ATHENA_CORE_NUMBER=8
[2026-01-09 04:54:03] Starting ATLAS job with PandaID=6963188486
[2026-01-09 04:54:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:00:02 (18232): BOINC client no longer exists - exiting
05:00:02 (18232): timer handler: client dead, exiting
05:12:09 (10381): wrapper (7.7.26015): starting
05:12:09 (10381): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 05:12:09] Arguments: --nthreads 8
[2026-01-09 05:12:09] Threads: 8
[2026-01-09 05:12:09] This job has been restarted, cleaning up previous attempt
[2026-01-09 05:12:09] Checking for CVMFS
[2026-01-09 05:12:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:12:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:12:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:12:09] 2.11.2.0 4697 180888 135832 154938 1 188 16432750 18432001 1 130560 0 121569055 99.979 7058019 34187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 05:12:09] CVMFS is ok
[2026-01-09 05:12:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:12:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:12:09] Further information can be found at the LHC@home message board.
[2026-01-09 05:12:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:12:09] Checking for apptainer binary...
[2026-01-09 05:12:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:12:09] Running /usr/bin/apptainer --version
[2026-01-09 05:12:09] apptainer version 1.3.2-1.el7
[2026-01-09 05:12:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:12:10] c-206-21.aglt2.org
[2026-01-09 05:12:10] apptainer works
[2026-01-09 05:12:10] Set ATHENA_PROC_NUMBER=8
[2026-01-09 05:12:10] Set ATHENA_CORE_NUMBER=8
[2026-01-09 05:12:10] Starting ATLAS job with PandaID=6963188486
[2026-01-09 05:12:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:42:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:42:55] 2026-01-09 14:42:13,214 | INFO     | chi2: 1.2586387755472863
[2026-01-09 09:42:55] 2026-01-09 14:42:13,214 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,216 | INFO     | sum of deviations: 51380820909.49999
[2026-01-09 09:42:55] 2026-01-09 14:42:13,216 | INFO     | mean x: 1767961468.5
[2026-01-09 09:42:55] 2026-01-09 14:42:13,216 | INFO     | mean y: 2470786.6807692307
[2026-01-09 09:42:55] 2026-01-09 14:42:13,216 | INFO     | intersect: -16665463936.65548
[2026-01-09 09:42:55] 2026-01-09 14:42:13,217 | INFO     | chi2: 1.2586757096135985
[2026-01-09 09:42:55] 2026-01-09 14:42:13,217 | INFO     | current chi2=1.2586757096135985 (change=-0.0029344452935801332 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,217 | INFO     | right removable region: 259
[2026-01-09 09:42:55] 2026-01-09 14:42:13,217 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,219 | INFO     | sum of deviations: 15932989885.500002
[2026-01-09 09:42:55] 2026-01-09 14:42:13,219 | INFO     | mean x: 1767961773.5
[2026-01-09 09:42:55] 2026-01-09 14:42:13,219 | INFO     | mean y: 2488687.5115384613
[2026-01-09 09:42:55] 2026-01-09 14:42:13,219 | INFO     | intersect: -5166173012.963984
[2026-01-09 09:42:55] 2026-01-09 14:42:13,220 | INFO     | chi2: 0.025018503013029287
[2026-01-09 09:42:55] 2026-01-09 14:42:13,220 | INFO     | current chi2=0.025018503013029287 (change=98.0122570908281 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,220 | INFO     | sum of square deviations: 5141528960.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,222 | INFO     | sum of deviations: 10781299637.000002
[2026-01-09 09:42:55] 2026-01-09 14:42:13,222 | INFO     | mean x: 1767961926.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,222 | INFO     | mean y: 2491214.9921568627
[2026-01-09 09:42:55] 2026-01-09 14:42:13,222 | INFO     | intersect: -3704757624.663046
[2026-01-09 09:42:55] 2026-01-09 14:42:13,222 | INFO     | chi2: 0.002005203679191383
[2026-01-09 09:42:55] 2026-01-09 14:42:13,223 | INFO     | current chi2=0.002005203679191383 (change=91.98511726242332 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,223 | INFO     | sum of square deviations: 4844974562.5
[2026-01-09 09:42:55] 2026-01-09 14:42:13,224 | INFO     | sum of deviations: 8914367675.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,224 | INFO     | mean x: 1767962078.5
[2026-01-09 09:42:55] 2026-01-09 14:42:13,225 | INFO     | mean y: 2492174.264
[2026-01-09 09:42:55] 2026-01-09 14:42:13,225 | INFO     | intersect: -3250417371.4723845
[2026-01-09 09:42:55] 2026-01-09 14:42:13,225 | INFO     | chi2: 0.0010860203954789296
[2026-01-09 09:42:55] 2026-01-09 14:42:13,225 | INFO     | current chi2=0.0010860203954789296 (change=45.83989612881234 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,226 | INFO     | sum of square deviations: 4560048290.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,227 | INFO     | sum of deviations: 7559920076.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,227 | INFO     | mean x: 1767962231.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,227 | INFO     | mean y: 2492897.5918367347
[2026-01-09 09:42:55] 2026-01-09 14:42:13,227 | INFO     | intersect: -2928540353.318462
[2026-01-09 09:42:55] 2026-01-09 14:42:13,228 | INFO     | chi2: 0.000623417705514916
[2026-01-09 09:42:55] 2026-01-09 14:42:13,228 | INFO     | current chi2=0.000623417705514916 (change=42.59613280651217 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,228 | INFO     | sum of square deviations: 4286517580.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | sum of deviations: 6784187345.999999
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | mean x: 1767962383.5
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | mean y: 2493329.6333333333
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | intersect: -2795626077.6699486
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | chi2: 0.0005539794657089024
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | current chi2=0.0005539794657089024 (change=11.138316924871521 %)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,230 | INFO     | left removable region: 50
[2026-01-09 09:42:55] 2026-01-09 14:42:13,231 | INFO     | sum of square deviations: 2830787960.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,232 | INFO     | sum of deviations: 5515791715.000001
[2026-01-09 09:42:55] 2026-01-09 14:42:13,232 | INFO     | mean x: 1767962963.0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,232 | INFO     | mean y: 2493677.588516746
[2026-01-09 09:42:55] 2026-01-09 14:42:13,232 | INFO     | intersect: -3442383014.533013
[2026-01-09 09:42:55] 2026-01-09 14:42:13,233 | INFO     | chi2: 0.00032310957565495494
[2026-01-09 09:42:55] 2026-01-09 14:42:13,233 | INFO     | current memory leak: 1.95 B/s (using 209 data points, chi2=0.00)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,233 | INFO     | could have reported an average CPU frequency of 2379 MHz (12 samples)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,233 | INFO     | ..............................
[2026-01-09 09:42:55] 2026-01-09 14:42:13,233 | INFO     | . Timing measurements:
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . get job = 0 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . initial setup = 1 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . payload setup = 6 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . stage-in = 0 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . payload execution = 16154 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . stage-out = 2 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | . log creation = 0 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,234 | INFO     | ..............................
[2026-01-09 09:42:55] 2026-01-09 14:42:13,319 | INFO     | 
[2026-01-09 09:42:55] 2026-01-09 14:42:13,319 | INFO     | job summary report
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | --------------------------------------------------
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | PanDA job id: 6963188486
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | task id: 47898826
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | errors: (none)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:42:55] 2026-01-09 14:42:13,320 | INFO     | pilot state: finished 
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | transexitcode: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | exeerrorcode: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | exeerrordiag: 
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | exitcode: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | exitmsg: OK
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | cpuconsumptiontime: 124448 s
[2026-01-09 09:42:55] 2026-01-09 14:42:13,321 | INFO     | nevents: 400
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | neventsw: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | pid: 8178
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | pgrp: 8178
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | corecount: 8
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | event service: False
[2026-01-09 09:42:55] 2026-01-09 14:42:13,322 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 16165: 2315665, 16167: 2324663, 16170: 2324719, 16175: 2325041}
[2026-01-09 09:42:55] 2026-01-09 14:42:13,323 | INFO     | --------------------------------------------------
[2026-01-09 09:42:55] 2026-01-09 14:42:13,323 | INFO     | 
[2026-01-09 09:42:55] 2026-01-09 14:42:13,323 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 09:42:55] 2026-01-09 14:42:13,343 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,343 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,343 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,346 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,346 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:42:55] 2026-01-09 14:42:13,347 | INFO     | job 6963188486 has completed (purged errors)
[2026-01-09 09:42:55] 2026-01-09 14:42:13,347 | INFO     | overall cleanup function is called
[2026-01-09 09:42:55] 2026-01-09 14:42:14,354 | INFO     | --- collectZombieJob: --- 10, [8178]
[2026-01-09 09:42:55] 2026-01-09 14:42:14,355 | INFO     | zombie collector waiting for pid 8178
[2026-01-09 09:42:55] 2026-01-09 14:42:14,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:42:55] 2026-01-09 14:42:14,355 | INFO     | collected zombie processes
[2026-01-09 09:42:55] 2026-01-09 14:42:14,355 | INFO     | will attempt to kill all subprocesses of pid=8178
[2026-01-09 09:42:55] 2026-01-09 14:42:14,478 | INFO     | process IDs to be killed: [8178] (in reverse order)
[2026-01-09 09:42:55] 2026-01-09 14:42:14,527 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:42:55] 2026-01-09 14:42:14,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:42:55] 2026-01-09 14:42:14,532 | INFO     | did not find any defunct processes belonging to 8178
[2026-01-09 09:42:55] 2026-01-09 14:42:14,535 | INFO     | did not find any defunct processes belonging to 8178
[2026-01-09 09:42:55] 2026-01-09 14:42:14,535 | INFO     | ready for new job
[2026-01-09 09:42:55] 2026-01-09 14:42:14,535 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:42:55] 2026-01-09 14:42:14,537 | INFO     | ***************************************
[2026-01-09 09:42:55] 2026-01-09 14:42:14,537 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:42:55] 2026-01-09 14:42:14,537 | INFO     | ***************************************
[2026-01-09 09:42:55] 2026-01-09 14:42:14,537 | INFO     | 
[2026-01-09 09:42:55] 2026-01-09 14:42:14,538 | INFO     | architecture information:
[2026-01-09 09:42:55] 2026-01-09 14:42:14,538 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:42:55] 2026-01-09 14:42:14,551 | INFO     | cat /etc/os-release:
[2026-01-09 09:42:55] NAME="CentOS Linux"
[2026-01-09 09:42:55] VERSION="7 (Core)"
[2026-01-09 09:42:55] ID="centos"
[2026-01-09 09:42:55] ID_LIKE="rhel fedora"
[2026-01-09 09:42:55] VERSION_ID="7"
[2026-01-09 09:42:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:42:55] ANSI_COLOR="0;31"
[2026-01-09 09:42:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:42:55] HOME_URL="https://www.centos.org/"
[2026-01-09 09:42:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:42:55] 
[2026-01-09 09:42:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:42:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:42:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:42:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:42:55] 
[2026-01-09 09:42:55] 2026-01-09 14:42:14,551 | INFO     | ***************************************
[2026-01-09 09:42:55] 2026-01-09 14:42:15,054 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 09:42:55] 2026-01-09 14:42:15,070 | INFO     | sufficient remaining disk space (27626831872 B)
[2026-01-09 09:42:55] 2026-01-09 14:42:15,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:42:55] 2026-01-09 14:42:15,071 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:42:55] 2026-01-09 14:42:15,071 | INFO     | update_server=False
[2026-01-09 09:42:55] 2026-01-09 14:42:15,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:42:55] 2026-01-09 14:42:15,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:42:55] 2026-01-09 14:42:15,072 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:42:55] 2026-01-09 14:42:15,609 | INFO     | all payload control threads have been joined
[2026-01-09 09:42:55] 2026-01-09 14:42:15,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:42:55] 2026-01-09 14:42:15,740 | INFO     | aborting loop
[2026-01-09 09:42:55] 2026-01-09 14:42:15,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:42:55] 2026-01-09 14:42:15,829 | INFO     | all data control threads have been joined
[2026-01-09 09:42:55] 2026-01-09 14:42:16,076 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,077 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,180 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,226 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,440 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,452 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,457 | INFO     | [job] validate thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,604 | INFO     | all job control threads have been joined
[2026-01-09 09:42:55] 2026-01-09 14:42:16,614 | INFO     | [payload] control thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,738 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,746 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:16,834 | INFO     | [data] control thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:17,367 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:17,609 | INFO     | [job] control thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:17,764 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:19,077 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:23,214 [wrapper] supervise_pilot (15 min periods counter: 19)
[2026-01-09 09:42:55] 2026-01-09 14:42:25,610 | INFO     | job.realtimelogging is not enabled
[2026-01-09 09:42:55] 2026-01-09 14:42:26,615 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:42:55] 2026-01-09 14:42:44,754 | INFO     | PID=21486 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:42:55] 2026-01-09 14:42:44,754 | INFO     | .. there are 3 such processes running
[2026-01-09 09:42:55] 2026-01-09 14:42:44,755 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:42:55] 2026-01-09 14:42:44,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:42:55] 2026-01-09 14:42:44,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:42:55] 2026-01-09 14:42:49,114 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:42:55] 2026-01-09 14:42:49,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431430711104)>', '<ExcThread(monitor, started 140430322689792)>']
[2026-01-09 09:42:55] 2026-01-09 14:42:50,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:42:55] 2026-01-09 14:42:50,778 | INFO     | [monitor] control thread has ended
[2026-01-09 09:42:55] 2026-01-09 14:42:54,859 | INFO     | all workflow threads have been joined
[2026-01-09 09:42:55] 2026-01-09 14:42:54,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:42:55] 2026-01-09 14:42:54,860 | INFO     | traces error code: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:54,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:42:55] 2026-01-09 14:42:54,943 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:42:55] 2026-01-09 14:42:54,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:42:55] 2026-01-09 14:42:54,950 [wrapper] pilotpid: 21486
[2026-01-09 09:42:55] 2026-01-09 14:42:54,953 [wrapper] Pilot exit status: 0
[2026-01-09 09:42:55] 2026-01-09 14:42:54,965 [wrapper] pandaids: 6963188486 6963188486
[2026-01-09 09:42:55] 2026-01-09 14:42:55,003 [wrapper] cleanup supervisor_pilot 11557 21487
[2026-01-09 09:42:55] 2026-01-09 14:42:55,006 [wrapper] Test setup, not cleaning
[2026-01-09 09:42:55] 2026-01-09 14:42:55,009 [wrapper] apfmon messages muted
[2026-01-09 09:42:55] 2026-01-09 14:42:55,012 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:42:55] 2026-01-09 14:42:55,015 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:42:55]  *** Error codes and diagnostics ***
[2026-01-09 09:42:55]     "exeErrorCode": 0,
[2026-01-09 09:42:55]     "exeErrorDiag": "",
[2026-01-09 09:42:55]     "pilotErrorCode": 0,
[2026-01-09 09:42:55]     "pilotErrorDiag": "",
[2026-01-09 09:42:55]  *** Listing of results directory ***
[2026-01-09 09:42:55] total 673956
[2026-01-09 09:42:55] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 09:42:55] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas       100 Jan  9 04:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:42:55] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 04:54 run_atlas
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas       105 Jan  9 04:54 job.xml
[2026-01-09 09:42:55] -rw-r--r-- 3 boincer umatlas 227403271 Jan  9 04:54 EVNT.47898824._001441.pool.root.1
[2026-01-09 09:42:55] -rw-r--r-- 3 boincer umatlas 227403271 Jan  9 04:54 ATLAS.root_0
[2026-01-09 09:42:55] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:54 start_atlas.sh
[2026-01-09 09:42:55] drwxrwx--x 2 boincer umatlas      4096 Jan  9 04:54 shared
[2026-01-09 09:42:55] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 04:54 input.tar.gz
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas         0 Jan  9 04:54 boinc_lockfile
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 05:12 pandaJob.out
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas        57 Jan  9 05:12 setup.sh.local
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas    989751 Jan  9 05:12 agis_schedconf.cvmfs.json
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 09:39 init_data.xml
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas 225910791 Jan  9 09:41 HITS.47898826._037573.pool.root.1
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas       531 Jan  9 09:41 boinc_task_state.xml
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas      1048 Jan  9 09:41 memory_monitor_summary.json
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas   1516240 Jan  9 09:42 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas    504693 Jan  9 09:42 log.47898826._037573.job.log.tgz.1
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas      7858 Jan  9 09:42 heartbeat.json
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 09:42 boinc_mmap_file
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas        29 Jan  9 09:42 wrapper_checkpoint.txt
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas        96 Jan  9 09:42 pilot_heartbeat.json
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas      4893 Jan  9 09:42 pilotlog.txt
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas   2243609 Jan  9 09:42 log.47898826._037573.job.log.1
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas       357 Jan  9 09:42 output.list
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas       620 Jan  9 09:42 runtime_log
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas   2764800 Jan  9 09:42 result.tar.gz
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas      9428 Jan  9 09:42 runtime_log.err
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas       788 Jan  9 09:42 HeRKDmoBJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqrgKDmk3qcyn.diag
[2026-01-09 09:42:55] -rw-r--r-- 1 boincer umatlas     23173 Jan  9 09:42 stderr.txt
[2026-01-09 09:42:55] HITS file was successfully produced:
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas 225910791 Jan  9 09:41 shared/HITS.pool.root.1
[2026-01-09 09:42:55]  *** Contents of shared directory: ***
[2026-01-09 09:42:55] total 445996
[2026-01-09 09:42:55] -rw-r--r-- 3 boincer umatlas 227403271 Jan  9 04:54 ATLAS.root_0
[2026-01-09 09:42:55] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:54 start_atlas.sh
[2026-01-09 09:42:55] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 04:54 input.tar.gz
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas 225910791 Jan  9 09:41 HITS.pool.root.1
[2026-01-09 09:42:55] -rw------- 1 boincer umatlas   2764800 Jan  9 09:42 result.tar.gz
09:42:56 (10381): run_atlas exited; CPU time 124689.651629
09:42:56 (10381): called boinc_finish(0)

</stderr_txt>
]]>

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