Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:23:19 (754): wrapper (7.7.26015): starting
14:23:19 (754): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:23:19] Arguments: --nthreads 8
[2026-01-09 14:23:19] Threads: 8
[2026-01-09 14:23:19] Checking for CVMFS
[2026-01-09 14:23:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:23:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:23:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:23:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:23:20] 2.11.2.0 1091 35469 95444 154945 2 56 19864483 25165824 0 130560 0 17753637 99.831 9664554 3449 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 14:23:20] CVMFS is ok
[2026-01-09 14:23:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:23:20] Checking for apptainer binary...
[2026-01-09 14:23:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:23:20] Running /usr/bin/apptainer --version
[2026-01-09 14:23:20] apptainer version 1.3.2-1.el7
[2026-01-09 14:23:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:23:21] cg-vwn498.simple-grid.lan
[2026-01-09 14:23:21] apptainer works
[2026-01-09 14:23:21] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:23:21] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:23:21] Starting ATLAS job with PandaID=6963161742
[2026-01-09 14:23:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:48:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:48:55] 2026-01-09 15:48:03,232 | INFO     | time since job start (8668s) is within the limit (349056.0s)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,586 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 16:48:55] 2026-01-09 15:48:04,587 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 16:48:55] 2026-01-09 15:48:04,589 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963161742/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,589 | INFO     | extracted standard info from prmon json
[2026-01-09 16:48:55] 2026-01-09 15:48:04,589 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 16:48:55] 2026-01-09 15:48:04,589 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 16:48:55] 2026-01-09 15:48:04,590 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 16:48:55] 2026-01-09 15:48:04,590 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 16:48:55] 2026-01-09 15:48:04,593 | INFO     | fitting pss+swap vs Time
[2026-01-09 16:48:55] 2026-01-09 15:48:04,593 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 16:48:55] 2026-01-09 15:48:04,594 | INFO     | sum of deviations: -19290059219.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,594 | INFO     | mean x: 1767969345.5
[2026-01-09 16:48:55] 2026-01-09 15:48:04,595 | INFO     | mean y: 2540042.6619718308
[2026-01-09 16:48:55] 2026-01-09 15:48:04,595 | INFO     | intersect: 38416260622.48421
[2026-01-09 16:48:55] 2026-01-09 15:48:04,595 | INFO     | chi2: 2.4471849825564895
[2026-01-09 16:48:55] 2026-01-09 15:48:04,595 | INFO     | sum of square deviations: 797291228.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,596 | INFO     | sum of deviations: -8726150101.000004
[2026-01-09 16:48:55] 2026-01-09 15:48:04,596 | INFO     | mean x: 1767969193.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,596 | INFO     | mean y: 2557389.890510949
[2026-01-09 16:48:55] 2026-01-09 15:48:04,596 | INFO     | intersect: 19352531414.76696
[2026-01-09 16:48:55] 2026-01-09 15:48:04,597 | INFO     | chi2: 1.6835666074551976
[2026-01-09 16:48:55] 2026-01-09 15:48:04,597 | INFO     | current chi2=1.6835666074551976 (change=31.20394986665725 %)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,597 | INFO     | sum of square deviations: 713140813.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,598 | INFO     | sum of deviations: -7716291715.500006
[2026-01-09 16:48:55] 2026-01-09 15:48:04,598 | INFO     | mean x: 1767969040.5
[2026-01-09 16:48:55] 2026-01-09 15:48:04,598 | INFO     | mean y: 2559220.8106060605
[2026-01-09 16:48:55] 2026-01-09 15:48:04,598 | INFO     | intersect: 19132252279.71936
[2026-01-09 16:48:55] 2026-01-09 15:48:04,599 | INFO     | chi2: 1.6839393488752448
[2026-01-09 16:48:55] 2026-01-09 15:48:04,599 | INFO     | current chi2=1.6839393488752448 (change=-0.02213998652602123 %)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,599 | INFO     | right removable region: 131
[2026-01-09 16:48:55] 2026-01-09 15:48:04,599 | INFO     | sum of square deviations: 797291228.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,600 | INFO     | sum of deviations: -41142356704.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,600 | INFO     | mean x: 1767969498.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,600 | INFO     | mean y: 2576265.897810219
[2026-01-09 16:48:55] 2026-01-09 15:48:04,600 | INFO     | intersect: 91234524108.8105
[2026-01-09 16:48:55] 2026-01-09 15:48:04,601 | INFO     | chi2: 0.9428608995717445
[2026-01-09 16:48:55] 2026-01-09 15:48:04,601 | INFO     | current chi2=0.9428608995717445 (change=61.47161304550135 %)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,601 | INFO     | sum of square deviations: 713140813.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,602 | INFO     | sum of deviations: -39443601497.999985
[2026-01-09 16:48:55] 2026-01-09 15:48:04,602 | INFO     | mean x: 1767969650.5
[2026-01-09 16:48:55] 2026-01-09 15:48:04,602 | INFO     | mean y: 2573110.3333333335
[2026-01-09 16:48:55] 2026-01-09 15:48:04,602 | INFO     | intersect: 97788436832.70636
[2026-01-09 16:48:55] 2026-01-09 15:48:04,602 | INFO     | chi2: 0.9274608495096267
[2026-01-09 16:48:55] 2026-01-09 15:48:04,603 | INFO     | current chi2=0.9274608495096267 (change=1.6333321351126757 %)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,603 | INFO     | left removable region: 20
[2026-01-09 16:48:55] 2026-01-09 15:48:04,603 | INFO     | sum of square deviations: 424045160.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,603 | INFO     | sum of deviations: -20933616318.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,604 | INFO     | mean x: 1767969620.0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,604 | INFO     | mean y: 2582477.756756757
[2026-01-09 16:48:55] 2026-01-09 15:48:04,604 | INFO     | intersect: 87281016894.88408
[2026-01-09 16:48:55] 2026-01-09 15:48:04,604 | INFO     | chi2: 0.11630825941073368
[2026-01-09 16:48:55] 2026-01-09 15:48:04,604 | INFO     | current memory leak: -49.37 B/s (using 111 data points, chi2=0.12)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | ..............................
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | . Timing measurements:
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | . get job = 0 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | . initial setup = 1 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | . payload setup = 6 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,605 | INFO     | . stage-in = 0 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,606 | INFO     | . payload execution = 8636 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,606 | INFO     | . stage-out = 0 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,606 | INFO     | . log creation = 0 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,606 | INFO     | ..............................
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | 
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | job summary report
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | --------------------------------------------------
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | PanDA job id: 6963161742
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | task id: 47898826
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | errors: (none)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | pilot state: finished 
[2026-01-09 16:48:55] 2026-01-09 15:48:04,711 | INFO     | transexitcode: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | exeerrorcode: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | exeerrordiag: 
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | exitcode: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | exitmsg: OK
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | cpuconsumptiontime: 65528 s
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | nevents: 400
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | neventsw: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | pid: 10986
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | pgrp: 10986
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | corecount: 8
[2026-01-09 16:48:55] 2026-01-09 15:48:04,712 | INFO     | event service: False
[2026-01-09 16:48:55] 2026-01-09 15:48:04,713 | INFO     | sizes: {0: 2283794, 1: 2283993, 6: 2284255, 11: 2284283, 8647: 2312135, 8648: 2321317, 8653: 2321455}
[2026-01-09 16:48:55] 2026-01-09 15:48:04,713 | INFO     | --------------------------------------------------
[2026-01-09 16:48:55] 2026-01-09 15:48:04,713 | INFO     | 
[2026-01-09 16:48:55] 2026-01-09 15:48:04,713 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-09 16:48:55] 2026-01-09 15:48:04,734 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:48:55] 2026-01-09 15:48:04,736 | INFO     | job 6963161742 has completed (purged errors)
[2026-01-09 16:48:55] 2026-01-09 15:48:04,737 | INFO     | overall cleanup function is called
[2026-01-09 16:48:55] 2026-01-09 15:48:05,744 | INFO     | --- collectZombieJob: --- 10, [10986]
[2026-01-09 16:48:55] 2026-01-09 15:48:05,745 | INFO     | zombie collector waiting for pid 10986
[2026-01-09 16:48:55] 2026-01-09 15:48:05,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:48:55] 2026-01-09 15:48:05,745 | INFO     | collected zombie processes
[2026-01-09 16:48:55] 2026-01-09 15:48:05,745 | INFO     | will attempt to kill all subprocesses of pid=10986
[2026-01-09 16:48:55] 2026-01-09 15:48:05,805 | INFO     | process IDs to be killed: [10986] (in reverse order)
[2026-01-09 16:48:55] 2026-01-09 15:48:05,853 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:48:55] 2026-01-09 15:48:05,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:48:55] 2026-01-09 15:48:05,855 | INFO     | did not find any defunct processes belonging to 10986
[2026-01-09 16:48:55] 2026-01-09 15:48:05,856 | INFO     | did not find any defunct processes belonging to 10986
[2026-01-09 16:48:55] 2026-01-09 15:48:05,856 | INFO     | ready for new job
[2026-01-09 16:48:55] 2026-01-09 15:48:05,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:48:55] 2026-01-09 15:48:05,858 | INFO     | ***************************************
[2026-01-09 16:48:55] 2026-01-09 15:48:05,858 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:48:55] 2026-01-09 15:48:05,858 | INFO     | ***************************************
[2026-01-09 16:48:55] 2026-01-09 15:48:05,858 | INFO     | 
[2026-01-09 16:48:55] 2026-01-09 15:48:05,859 | INFO     | pilot is running in a VM
[2026-01-09 16:48:55] 2026-01-09 15:48:05,859 | INFO     | architecture information:
[2026-01-09 16:48:55] 2026-01-09 15:48:05,859 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:48:55] 2026-01-09 15:48:05,877 | INFO     | cat /etc/os-release:
[2026-01-09 16:48:55] NAME="CentOS Linux"
[2026-01-09 16:48:55] VERSION="7 (Core)"
[2026-01-09 16:48:55] ID="centos"
[2026-01-09 16:48:55] ID_LIKE="rhel fedora"
[2026-01-09 16:48:55] VERSION_ID="7"
[2026-01-09 16:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:48:55] ANSI_COLOR="0;31"
[2026-01-09 16:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:48:55] HOME_URL="https://www.centos.org/"
[2026-01-09 16:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:48:55] 
[2026-01-09 16:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:48:55] 
[2026-01-09 16:48:55] 2026-01-09 15:48:05,877 | INFO     | ***************************************
[2026-01-09 16:48:55] 2026-01-09 15:48:06,380 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-09 16:48:55] 2026-01-09 15:48:06,397 | INFO     | sufficient remaining disk space (498784534528 B)
[2026-01-09 16:48:55] 2026-01-09 15:48:06,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:48:55] 2026-01-09 15:48:06,398 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:48:55] 2026-01-09 15:48:06,398 | INFO     | update_server=False
[2026-01-09 16:48:55] 2026-01-09 15:48:06,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:48:55] 2026-01-09 15:48:06,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:48:55] 2026-01-09 15:48:06,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:48:55] 2026-01-09 15:48:06,537 | INFO     | aborting loop
[2026-01-09 16:48:55] 2026-01-09 15:48:06,547 | INFO     | all data control threads have been joined
[2026-01-09 16:48:55] 2026-01-09 15:48:06,855 | INFO     | all payload control threads have been joined
[2026-01-09 16:48:55] 2026-01-09 15:48:07,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:48:55] 2026-01-09 15:48:07,391 | INFO     | all job control threads have been joined
[2026-01-09 16:48:55] 2026-01-09 15:48:07,404 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,404 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,543 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,553 | INFO     | [data] control thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,735 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,757 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,778 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,849 | INFO     | [job] validate thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:07,861 | INFO     | [payload] control thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:08,151 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:08,252 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:08,396 | INFO     | [job] control thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:08,866 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:09,260 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:09,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:48:55] 2026-01-09 15:48:13,861 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:17,235 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:48:55] 2026-01-09 15:48:18,241 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:48:55] 2026-01-09 15:48:36,417 | INFO     | PID=4543 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 16:48:55] 2026-01-09 15:48:36,418 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:48:55] 2026-01-09 15:48:36,418 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:48:55] 2026-01-09 15:48:36,418 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:48:55] 2026-01-09 15:48:49,215 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:48:55] 2026-01-09 15:48:49,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294124525376)>', '<ExcThread(monitor, started 140293680649984)>']
[2026-01-09 16:48:55] 2026-01-09 15:48:50,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:48:55] 2026-01-09 15:48:50,483 | INFO     | [monitor] control thread has ended
[2026-01-09 16:48:55] 2026-01-09 15:48:54,863 | INFO     | all workflow threads have been joined
[2026-01-09 16:48:55] 2026-01-09 15:48:54,864 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:48:55] 2026-01-09 15:48:54,864 | INFO     | traces error code: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:54,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:48:55] 2026-01-09 15:48:54,998 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:48:55] 2026-01-09 15:48:55,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:48:55] 2026-01-09 15:48:55,014 [wrapper] pilotpid: 4543
[2026-01-09 16:48:55] 2026-01-09 15:48:55,020 [wrapper] Pilot exit status: 0
[2026-01-09 16:48:55] 2026-01-09 15:48:55,037 [wrapper] pandaids: 6963161742
[2026-01-09 16:48:55] 2026-01-09 15:48:55,069 [wrapper] cleanup supervisor_pilot 27370 4544
[2026-01-09 16:48:55] 2026-01-09 15:48:55,073 [wrapper] Test setup, not cleaning
[2026-01-09 16:48:55] 2026-01-09 15:48:55,076 [wrapper] apfmon messages muted
[2026-01-09 16:48:55] 2026-01-09 15:48:55,080 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:48:55] 2026-01-09 15:48:55,083 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:48:55]  *** Error codes and diagnostics ***
[2026-01-09 16:48:55]     "exeErrorCode": 0,
[2026-01-09 16:48:55]     "exeErrorDiag": "",
[2026-01-09 16:48:55]     "pilotErrorCode": 0,
[2026-01-09 16:48:55]     "pilotErrorDiag": "",
[2026-01-09 16:48:55]  *** Listing of results directory ***
[2026-01-09 16:48:55] total 437872
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 16:48:55] -rwx------. 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc       100 Jan  9 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:48:55] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 14:23 run_atlas
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc       105 Jan  9 14:23 job.xml
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc 223990925 Jan  9 14:23 EVNT.47898824._001225.pool.root.1
[2026-01-09 16:48:55] drwxrwx--x. 2 boinc boinc        68 Jan  9 14:23 shared
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc    592397 Jan  9 14:23 input.tar.gz
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc      6390 Jan  9 14:23 init_data.xml
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:23 start_atlas.sh
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc         0 Jan  9 14:23 boinc_lockfile
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc      2517 Jan  9 14:23 pandaJob.out
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc    989377 Jan  9 14:23 agis_schedconf.cvmfs.json
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc   1516240 Jan  9 14:23 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:48:55] drwx------. 5 boinc boinc      4096 Jan  9 14:23 pilot3
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc 217433249 Jan  9 16:47 HITS.47898826._033399.pool.root.1
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc       530 Jan  9 16:47 boinc_task_state.xml
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc      1014 Jan  9 16:47 memory_monitor_summary.json
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc    363077 Jan  9 16:47 log.47898826._033399.job.log.tgz.1
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc      7772 Jan  9 16:48 heartbeat.json
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc      8192 Jan  9 16:48 boinc_mmap_file
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc        27 Jan  9 16:48 wrapper_checkpoint.txt
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc        95 Jan  9 16:48 pilot_heartbeat.json
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc      4880 Jan  9 16:48 pilotlog.txt
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc   1164365 Jan  9 16:48 log.47898826._033399.job.log.1
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc       357 Jan  9 16:48 output.list
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc       620 Jan  9 16:48 runtime_log
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc   1546240 Jan  9 16:48 result.tar.gz
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc       652 Jan  9 16:48 WqcMDmG1Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHWlKDmgdHLhm.diag
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc      8816 Jan  9 16:48 runtime_log.err
[2026-01-09 16:48:55] -rw-r--r--. 1 boinc boinc     20686 Jan  9 16:48 stderr.txt
[2026-01-09 16:48:55] HITS file was successfully produced:
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc 217433249 Jan  9 16:47 shared/HITS.pool.root.1
[2026-01-09 16:48:55]  *** Contents of shared directory: ***
[2026-01-09 16:48:55] total 433192
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc 223990925 Jan  9 14:23 ATLAS.root_0
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc    592397 Jan  9 14:23 input.tar.gz
[2026-01-09 16:48:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:23 start_atlas.sh
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc 217433249 Jan  9 16:47 HITS.pool.root.1
[2026-01-09 16:48:55] -rw-------. 1 boinc boinc   1546240 Jan  9 16:48 result.tar.gz
16:48:57 (754): run_atlas exited; CPU time 65581.522804
16:48:57 (754): called boinc_finish(0)

</stderr_txt>
]]>

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