Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:22:56 (7643): wrapper (7.7.26015): starting
12:22:56 (7643): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:22:56] Arguments: --nthreads 8
[2026-01-09 12:22:56] Threads: 8
[2026-01-09 12:22:56] Checking for CVMFS
[2026-01-09 12:22:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:22:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:22:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:22:56] 2.11.2.0 17738 35350 116532 154942 2 56 18985488 25165824 0 130560 0 15524606 99.816 10257399 3622 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 12:22:56] CVMFS is ok
[2026-01-09 12:22:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:22:56] Checking for apptainer binary...
[2026-01-09 12:22:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:22:56] Running /usr/bin/apptainer --version
[2026-01-09 12:22:56] apptainer version 1.3.2-1.el7
[2026-01-09 12:22:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:22:58] cg-vwn450.simple-grid.lan
[2026-01-09 12:22:58] apptainer works
[2026-01-09 12:22:58] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:22:58] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:22:58] Starting ATLAS job with PandaID=6963161449
[2026-01-09 12:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:12:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:12:35] 2026-01-09 14:11:23,540 | INFO     | time since job start (10091s) is within the limit (349056.0s)
[2026-01-09 15:12:35] 2026-01-09 14:11:23,564 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 15:12:35] 2026-01-09 14:11:24,077 | INFO     | monitor loop #692: job 0:6963161449 is in state 'finished'
[2026-01-09 15:12:35] 2026-01-09 14:11:24,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 15:12:35] 2026-01-09 14:11:24,624 | INFO     | PID=11390 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 15:12:35] 2026-01-09 14:11:25,625 | INFO     | time since job start (10093s) is within the limit (349056.0s)
[2026-01-09 15:12:35] 2026-01-09 14:11:26,580 | INFO     | monitor loop #693: job 0:6963161449 is in state 'finished'
[2026-01-09 15:12:35] 2026-01-09 14:11:26,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 15:12:35] 2026-01-09 14:11:27,630 | INFO     | time since job start (10095s) is within the limit (349056.0s)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,274 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 15:12:35] 2026-01-09 14:11:28,275 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 15:12:35] 2026-01-09 14:11:28,277 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963161449/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,278 | INFO     | extracted standard info from prmon json
[2026-01-09 15:12:35] 2026-01-09 14:11:28,278 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:12:35] 2026-01-09 14:11:28,278 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:12:35] 2026-01-09 14:11:28,279 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:12:35] 2026-01-09 14:11:28,279 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:12:35] 2026-01-09 14:11:28,283 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:12:35] 2026-01-09 14:11:28,283 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,284 | INFO     | sum of deviations: -24043413154.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,284 | INFO     | mean x: 1767962824.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,284 | INFO     | mean y: 2598801.0727272728
[2026-01-09 15:12:35] 2026-01-09 14:11:28,285 | INFO     | intersect: 30520519740.96502
[2026-01-09 15:12:35] 2026-01-09 14:11:28,285 | INFO     | chi2: 1.733360715327812
[2026-01-09 15:12:35] 2026-01-09 14:11:28,285 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,286 | INFO     | sum of deviations: -21779613636.500004
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | mean x: 1767962671.5
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | mean y: 2601612.56875
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | intersect: 30320692838.82556
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | chi2: 1.733761268819418
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | current chi2=1.733761268819418 (change=-0.023108490233095243 %)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,287 | INFO     | right removable region: 159
[2026-01-09 15:12:35] 2026-01-09 14:11:28,288 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,289 | INFO     | sum of deviations: -50803196811.99999
[2026-01-09 15:12:35] 2026-01-09 14:11:28,289 | INFO     | mean x: 1767962976.5
[2026-01-09 15:12:35] 2026-01-09 14:11:28,289 | INFO     | mean y: 2631586.075
[2026-01-09 15:12:35] 2026-01-09 14:11:28,289 | INFO     | intersect: 70722720884.05951
[2026-01-09 15:12:35] 2026-01-09 14:11:28,290 | INFO     | chi2: 0.16082241898419833
[2026-01-09 15:12:35] 2026-01-09 14:11:28,290 | INFO     | current chi2=0.16082241898419833 (change=90.72193008863803 %)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,290 | INFO     | sum of square deviations: 1154663510.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,291 | INFO     | sum of deviations: -50404953309.99999
[2026-01-09 15:12:35] 2026-01-09 14:11:28,291 | INFO     | mean x: 1767963129.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,291 | INFO     | mean y: 2631007.8451612904
[2026-01-09 15:12:35] 2026-01-09 14:11:28,291 | INFO     | intersect: 77180179444.4858
[2026-01-09 15:12:35] 2026-01-09 14:11:28,292 | INFO     | chi2: 0.1308139640188175
[2026-01-09 15:12:35] 2026-01-09 14:11:28,292 | INFO     | current chi2=0.1308139640188175 (change=18.659372962378658 %)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,292 | INFO     | left removable region: 20
[2026-01-09 15:12:35] 2026-01-09 14:11:28,292 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,293 | INFO     | sum of deviations: -41117402823.99997
[2026-01-09 15:12:35] 2026-01-09 14:11:28,293 | INFO     | mean x: 1767963251.0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,294 | INFO     | mean y: 2626678.964028777
[2026-01-09 15:12:35] 2026-01-09 14:11:28,294 | INFO     | intersect: 87299474443.59062
[2026-01-09 15:12:35] 2026-01-09 14:11:28,294 | INFO     | chi2: 0.11703189280568284
[2026-01-09 15:12:35] 2026-01-09 14:11:28,294 | INFO     | current memory leak: -49.38 B/s (using 139 data points, chi2=0.12)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | ..............................
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | . Timing measurements:
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | . get job = 0 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | . initial setup = 1 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | . payload setup = 6 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,295 | INFO     | . stage-in = 0 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,296 | INFO     | . payload execution = 10060 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,296 | INFO     | . stage-out = 1 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,296 | INFO     | . log creation = 0 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,296 | INFO     | ..............................
[2026-01-09 15:12:35] 2026-01-09 14:11:28,675 | INFO     | 
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | job summary report
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | --------------------------------------------------
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | PanDA job id: 6963161449
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | task id: 47898826
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | errors: (none)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,676 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:12:35] 2026-01-09 14:11:28,677 | INFO     | pilot state: finished 
[2026-01-09 15:12:35] 2026-01-09 14:11:28,677 | INFO     | transexitcode: 0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,677 | INFO     | exeerrorcode: 0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,677 | INFO     | exeerrordiag: 
[2026-01-09 15:12:35] 2026-01-09 14:11:28,677 | INFO     | exitcode: 0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | exitmsg: OK
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | cpuconsumptiontime: 76605 s
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | nevents: 400
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | neventsw: 0
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | pid: 17850
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | pgrp: 17850
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | corecount: 8
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | event service: False
[2026-01-09 15:12:35] 2026-01-09 14:11:28,678 | INFO     | sizes: {0: 2283801, 1: 2284000, 5: 2284262, 11: 2284318, 10071: 2312754, 10073: 2321938, 10080: 2322140}
[2026-01-09 15:12:35] 2026-01-09 14:11:28,679 | INFO     | --------------------------------------------------
[2026-01-09 15:12:35] 2026-01-09 14:11:28,679 | INFO     | 
[2026-01-09 15:12:35] 2026-01-09 14:11:28,679 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-09 15:12:35] 2026-01-09 14:11:28,704 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,704 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,704 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,704 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | job 6963161449 has completed (purged errors)
[2026-01-09 15:12:35] 2026-01-09 14:11:28,706 | INFO     | overall cleanup function is called
[2026-01-09 15:12:35] 2026-01-09 14:11:29,714 | INFO     | --- collectZombieJob: --- 10, [17850]
[2026-01-09 15:12:35] 2026-01-09 14:11:29,715 | INFO     | zombie collector waiting for pid 17850
[2026-01-09 15:12:35] 2026-01-09 14:11:29,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:12:35] 2026-01-09 14:11:29,715 | INFO     | collected zombie processes
[2026-01-09 15:12:35] 2026-01-09 14:11:29,715 | INFO     | will attempt to kill all subprocesses of pid=17850
[2026-01-09 15:12:35] 2026-01-09 14:11:29,776 | INFO     | process IDs to be killed: [17850] (in reverse order)
[2026-01-09 15:12:35] 2026-01-09 14:11:29,820 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:12:35] 2026-01-09 14:11:29,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:12:35] 2026-01-09 14:11:29,823 | INFO     | did not find any defunct processes belonging to 17850
[2026-01-09 15:12:35] 2026-01-09 14:11:29,824 | INFO     | did not find any defunct processes belonging to 17850
[2026-01-09 15:12:35] 2026-01-09 14:11:29,824 | INFO     | ready for new job
[2026-01-09 15:12:35] 2026-01-09 14:11:29,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:12:35] 2026-01-09 14:11:29,826 | INFO     | ***************************************
[2026-01-09 15:12:35] 2026-01-09 14:11:29,827 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:12:35] 2026-01-09 14:11:29,827 | INFO     | ***************************************
[2026-01-09 15:12:35] 2026-01-09 14:11:29,827 | INFO     | 
[2026-01-09 15:12:35] 2026-01-09 14:11:29,828 | INFO     | pilot is running in a VM
[2026-01-09 15:12:35] 2026-01-09 14:11:29,828 | INFO     | architecture information:
[2026-01-09 15:12:35] 2026-01-09 14:11:29,828 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:12:35] 2026-01-09 14:11:29,845 | INFO     | cat /etc/os-release:
[2026-01-09 15:12:35] NAME="CentOS Linux"
[2026-01-09 15:12:35] VERSION="7 (Core)"
[2026-01-09 15:12:35] ID="centos"
[2026-01-09 15:12:35] ID_LIKE="rhel fedora"
[2026-01-09 15:12:35] VERSION_ID="7"
[2026-01-09 15:12:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:12:35] ANSI_COLOR="0;31"
[2026-01-09 15:12:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:12:35] HOME_URL="https://www.centos.org/"
[2026-01-09 15:12:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:12:35] 
[2026-01-09 15:12:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:12:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:12:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:12:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:12:35] 
[2026-01-09 15:12:35] 2026-01-09 14:11:29,846 | INFO     | ***************************************
[2026-01-09 15:12:35] 2026-01-09 14:11:30,349 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-09 15:12:35] 2026-01-09 14:11:30,371 | INFO     | sufficient remaining disk space (498296946688 B)
[2026-01-09 15:12:35] 2026-01-09 14:11:30,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:12:35] 2026-01-09 14:11:30,372 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:12:35] 2026-01-09 14:11:30,372 | INFO     | update_server=False
[2026-01-09 15:12:35] 2026-01-09 14:11:30,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:12:35] 2026-01-09 14:11:30,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:12:35] 2026-01-09 14:11:30,373 | INFO     | aborting loop
[2026-01-09 15:12:35] 2026-01-09 14:11:30,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:12:35] 2026-01-09 14:11:30,732 | INFO     | all job control threads have been joined
[2026-01-09 15:12:35] 2026-01-09 14:11:31,114 | INFO     | all data control threads have been joined
[2026-01-09 15:12:35] 2026-01-09 14:11:31,378 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:31,379 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:31,379 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:31,466 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:31,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:12:35] 2026-01-09 14:11:31,697 | INFO     | all payload control threads have been joined
[2026-01-09 15:12:35] 2026-01-09 14:11:31,737 | INFO     | [job] control thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,120 | INFO     | [data] control thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,150 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:12:35] 2026-01-09 14:11:32,252 | INFO     | [job] validate thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,260 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,365 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,667 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,688 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,702 | INFO     | [payload] control thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:32,863 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:33,657 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:11:36,163 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:12:35] 2026-01-09 14:12:00,718 | INFO     | PID=11390 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 15:12:35] 2026-01-09 14:12:00,719 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:12:35] 2026-01-09 14:12:00,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:12:35] 2026-01-09 14:12:00,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:12:35] 2026-01-09 14:12:28,574 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:12:35] 2026-01-09 14:12:29,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997139318592)>', '<ExcThread(monitor, started 139996270950144)>']
[2026-01-09 15:12:35] 2026-01-09 14:12:30,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:12:35] 2026-01-09 14:12:30,871 | INFO     | [monitor] control thread has ended
[2026-01-09 15:12:35] 2026-01-09 14:12:35,011 | INFO     | all workflow threads have been joined
[2026-01-09 15:12:35] 2026-01-09 14:12:35,011 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:12:35] 2026-01-09 14:12:35,012 | INFO     | traces error code: 0
[2026-01-09 15:12:35] 2026-01-09 14:12:35,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:12:35] 2026-01-09 14:12:35,157 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:12:35] 2026-01-09 14:12:35,162 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:12:35] 2026-01-09 14:12:35,165 [wrapper] pilotpid: 11390
[2026-01-09 15:12:35] 2026-01-09 14:12:35,169 [wrapper] Pilot exit status: 0
[2026-01-09 15:12:35] 2026-01-09 14:12:35,187 [wrapper] pandaids: 6963161449
[2026-01-09 15:12:35] 2026-01-09 14:12:35,228 [wrapper] cleanup supervisor_pilot  4620 11391
[2026-01-09 15:12:35] 2026-01-09 14:12:35,234 [wrapper] Test setup, not cleaning
[2026-01-09 15:12:35] 2026-01-09 14:12:35,241 [wrapper] apfmon messages muted
[2026-01-09 15:12:35] 2026-01-09 14:12:35,245 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:12:35] 2026-01-09 14:12:35,248 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:12:35]  *** Error codes and diagnostics ***
[2026-01-09 15:12:35]     "exeErrorCode": 0,
[2026-01-09 15:12:35]     "exeErrorDiag": "",
[2026-01-09 15:12:35]     "pilotErrorCode": 0,
[2026-01-09 15:12:35]     "pilotErrorDiag": "",
[2026-01-09 15:12:35]  *** Listing of results directory ***
[2026-01-09 15:12:35] total 444716
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 15:12:35] -rwx------. 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc       100 Jan  9 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:12:35] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 12:22 run_atlas
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc       105 Jan  9 12:22 job.xml
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc      6391 Jan  9 12:22 init_data.xml
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc 224837474 Jan  9 12:22 EVNT.47898824._001280.pool.root.1
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 12:22 start_atlas.sh
[2026-01-09 15:12:35] drwxrwx--x. 2 boinc boinc        68 Jan  9 12:22 shared
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc    592402 Jan  9 12:22 input.tar.gz
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc         0 Jan  9 12:22 boinc_lockfile
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc      2520 Jan  9 12:22 pandaJob.out
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc    989377 Jan  9 12:23 agis_schedconf.cvmfs.json
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc   1516240 Jan  9 12:23 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:12:35] drwx------. 5 boinc boinc      4096 Jan  9 12:23 pilot3
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc 223136705 Jan  9 15:10 HITS.47898826._033111.pool.root.1
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc       531 Jan  9 15:10 boinc_task_state.xml
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc      1010 Jan  9 15:11 memory_monitor_summary.json
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc        95 Jan  9 15:11 pilot_heartbeat.json
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc    399245 Jan  9 15:11 log.47898826._033111.job.log.tgz.1
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc      7772 Jan  9 15:11 heartbeat.json
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc      8192 Jan  9 15:12 boinc_mmap_file
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc        28 Jan  9 15:12 wrapper_checkpoint.txt
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc      4810 Jan  9 15:12 pilotlog.txt
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc   1359219 Jan  9 15:12 log.47898826._033111.job.log.1
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc       357 Jan  9 15:12 output.list
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc       620 Jan  9 15:12 runtime_log
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc   1781760 Jan  9 15:12 result.tar.gz
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc      8833 Jan  9 15:12 runtime_log.err
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc       655 Jan  9 15:12 2hBNDmF1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtHgKDmbCnN9n.diag
[2026-01-09 15:12:35] -rw-r--r--. 1 boinc boinc     21160 Jan  9 15:12 stderr.txt
[2026-01-09 15:12:35] HITS file was successfully produced:
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc 223136705 Jan  9 15:10 shared/HITS.pool.root.1
[2026-01-09 15:12:35]  *** Contents of shared directory: ***
[2026-01-09 15:12:35] total 439812
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc 224837474 Jan  9 12:22 ATLAS.root_0
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 12:22 start_atlas.sh
[2026-01-09 15:12:35] -rw-r--r--. 2 boinc boinc    592402 Jan  9 12:22 input.tar.gz
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc 223136705 Jan  9 15:10 HITS.pool.root.1
[2026-01-09 15:12:35] -rw-------. 1 boinc boinc   1781760 Jan  9 15:12 result.tar.gz
15:12:37 (7643): run_atlas exited; CPU time 76672.857974
15:12:37 (7643): called boinc_finish(0)

</stderr_txt>
]]>

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