Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:34:36 (1891475): wrapper (7.7.26015): starting
23:34:36 (1891475): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 23:34:36] Arguments: --nthreads 4
[2026-01-09 23:34:36] Threads: 4
[2026-01-09 23:34:36] Checking for CVMFS
[2026-01-09 23:34:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:34:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:34:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:34:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:34:36] 2.9.2.0 1035262 2763 94148 154959 1 56 21177160 36864001 0 130560 0 1941910 99.989 105959 5549 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 23:34:36] CVMFS is ok
[2026-01-09 23:34:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:34:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:34:36] Further information can be found at the LHC@home message board.
[2026-01-09 23:34:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:34:36] Checking for apptainer binary...
[2026-01-09 23:34:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:34:36] Running /usr/bin/apptainer --version
[2026-01-09 23:34:36] apptainer version 1.4.1-1.1
[2026-01-09 23:34:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:34:36] thA309
[2026-01-09 23:34:36] apptainer works
[2026-01-09 23:34:36] Set ATHENA_PROC_NUMBER=4
[2026-01-09 23:34:36] Set ATHENA_CORE_NUMBER=4
[2026-01-09 23:34:36] Starting ATLAS job with PandaID=6963161544
[2026-01-09 23:34:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:16:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,033 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | job 6963161544 has completed (purged errors)
[2026-01-10 01:16:58] 2026-01-10 00:16:00,034 | INFO     | overall cleanup function is called
[2026-01-10 01:16:58] 2026-01-10 00:16:01,040 | INFO     | --- collectZombieJob: --- 10, [1901882]
[2026-01-10 01:16:58] 2026-01-10 00:16:01,041 | INFO     | zombie collector waiting for pid 1901882
[2026-01-10 01:16:58] 2026-01-10 00:16:01,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:16:58] 2026-01-10 00:16:01,041 | INFO     | collected zombie processes
[2026-01-10 01:16:58] 2026-01-10 00:16:01,041 | INFO     | will attempt to kill all subprocesses of pid=1901882
[2026-01-10 01:16:58] 2026-01-10 00:16:01,092 | INFO     | process IDs to be killed: [1901882] (in reverse order)
[2026-01-10 01:16:58] 2026-01-10 00:16:01,129 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:16:58] 2026-01-10 00:16:01,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:16:58] 2026-01-10 00:16:01,131 | INFO     | did not find any defunct processes belonging to 1901882
[2026-01-10 01:16:58] 2026-01-10 00:16:01,133 | INFO     | did not find any defunct processes belonging to 1901882
[2026-01-10 01:16:58] 2026-01-10 00:16:01,133 | INFO     | ready for new job
[2026-01-10 01:16:58] 2026-01-10 00:16:01,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:16:58] 2026-01-10 00:16:01,134 | INFO     | ***************************************
[2026-01-10 01:16:58] 2026-01-10 00:16:01,134 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:16:58] 2026-01-10 00:16:01,134 | INFO     | ***************************************
[2026-01-10 01:16:58] 2026-01-10 00:16:01,134 | INFO     | 
[2026-01-10 01:16:58] 2026-01-10 00:16:01,135 | INFO     | architecture information:
[2026-01-10 01:16:58] 2026-01-10 00:16:01,135 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:16:58] 2026-01-10 00:16:01,150 | INFO     | cat /etc/os-release:
[2026-01-10 01:16:58] NAME="CentOS Linux"
[2026-01-10 01:16:58] VERSION="7 (Core)"
[2026-01-10 01:16:58] ID="centos"
[2026-01-10 01:16:58] ID_LIKE="rhel fedora"
[2026-01-10 01:16:58] VERSION_ID="7"
[2026-01-10 01:16:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:16:58] ANSI_COLOR="0;31"
[2026-01-10 01:16:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:16:58] HOME_URL="https://www.centos.org/"
[2026-01-10 01:16:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:16:58] 
[2026-01-10 01:16:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:16:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:16:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:16:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:16:58] 
[2026-01-10 01:16:58] 2026-01-10 00:16:01,150 | INFO     | ***************************************
[2026-01-10 01:16:58] 2026-01-10 00:16:01,654 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 01:16:58] 2026-01-10 00:16:01,672 | INFO     | sufficient remaining disk space (238115880960 B)
[2026-01-10 01:16:58] 2026-01-10 00:16:01,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:16:58] 2026-01-10 00:16:01,672 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:16:58] 2026-01-10 00:16:01,672 | INFO     | update_server=False
[2026-01-10 01:16:58] 2026-01-10 00:16:01,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:16:58] 2026-01-10 00:16:01,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:16:58] 2026-01-10 00:16:01,673 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:16:58] 2026-01-10 00:16:02,144 | INFO     | all data control threads have been joined
[2026-01-10 01:16:58] 2026-01-10 00:16:02,447 | INFO     | all job control threads have been joined
[2026-01-10 01:16:58] 2026-01-10 00:16:02,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:16:58] 2026-01-10 00:16:02,539 | INFO     | aborting loop
[2026-01-10 01:16:58] 2026-01-10 00:16:02,678 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:02,678 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:02,799 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:02,961 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:02,998 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,145 | INFO     | all payload control threads have been joined
[2026-01-10 01:16:58] 2026-01-10 00:16:03,150 | INFO     | [data] control thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,318 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:16:58] 2026-01-10 00:16:03,441 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,452 | INFO     | [job] control thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,544 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,679 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:03,740 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:04,116 | INFO     | [job] validate thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:04,151 | INFO     | [payload] control thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:04,156 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:07,394 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:16:58] 2026-01-10 00:16:31,798 | INFO     | PID=1895275 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 01:16:58] 2026-01-10 00:16:31,798 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:16:58] 2026-01-10 00:16:31,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:16:58] 2026-01-10 00:16:31,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:16:58] 2026-01-10 00:16:51,649 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:16:58] 2026-01-10 00:16:52,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065375004480)>', '<ExcThread(monitor, started 140065015572224)>']
[2026-01-10 01:16:58] 2026-01-10 00:16:53,917 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:16:58] 2026-01-10 00:16:53,918 | INFO     | [monitor] control thread has ended
[2026-01-10 01:16:58] 2026-01-10 00:16:57,938 | INFO     | all workflow threads have been joined
[2026-01-10 01:16:58] 2026-01-10 00:16:57,938 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:16:58] 2026-01-10 00:16:57,938 | INFO     | traces error code: 0
[2026-01-10 01:16:58] 2026-01-10 00:16:57,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:16:58] 2026-01-10 00:16:58,308 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:16:58] 2026-01-10 00:16:58,312 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:16:58] 2026-01-10 00:16:58,316 [wrapper] pilotpid: 1895275
[2026-01-10 01:16:58] 2026-01-10 00:16:58,320 [wrapper] Pilot exit status: 0
[2026-01-10 01:16:58] 2026-01-10 00:16:58,332 [wrapper] pandaids: 6963161544
[2026-01-10 01:16:58] 2026-01-10 00:16:58,358 [wrapper] cleanup supervisor_pilot 1917856 1895276
[2026-01-10 01:16:58] 2026-01-10 00:16:58,362 [wrapper] Test setup, not cleaning
[2026-01-10 01:16:58] 2026-01-10 00:16:58,366 [wrapper] apfmon messages muted
[2026-01-10 01:16:58] 2026-01-10 00:16:58,370 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:16:58] 2026-01-10 00:16:58,374 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:16:58]  *** Error codes and diagnostics ***
[2026-01-10 01:16:58]     "exeErrorCode": 0,
[2026-01-10 01:16:58]     "exeErrorDiag": "",
[2026-01-10 01:16:58]     "pilotErrorCode": 0,
[2026-01-10 01:16:58]     "pilotErrorDiag": "",
[2026-01-10 01:16:58]  *** Listing of results directory ***
[2026-01-10 01:16:58] total 433628
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 01:16:58] -rwx------ 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc       100 Jan  9 23:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:16:58] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 23:34 run_atlas
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc       105 Jan  9 23:34 job.xml
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc 223832693 Jan  9 23:34 EVNT.47898824._001284.pool.root.1
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc    592395 Jan  9 23:34 input.tar.gz
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:34 start_atlas.sh
[2026-01-10 01:16:58] drwxrwx--x 2 boinc boinc      4096 Jan  9 23:34 shared
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:34 boinc_setup_complete
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc      6377 Jan  9 23:34 init_data.xml
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:34 boinc_lockfile
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc      2519 Jan  9 23:34 pandaJob.out
[2026-01-10 01:16:58] -rw------- 1 boinc boinc    989375 Jan  9 23:34 agis_schedconf.cvmfs.json
[2026-01-10 01:16:58] -rw------- 1 boinc boinc   1516240 Jan  9 23:34 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:16:58] drwx------ 5 boinc boinc      4096 Jan  9 23:34 pilot3
[2026-01-10 01:16:58] -rw------- 1 boinc boinc 213964318 Jan 10 01:15 HITS.47898826._033206.pool.root.1
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc       529 Jan 10 01:15 boinc_task_state.xml
[2026-01-10 01:16:58] -rw------- 1 boinc boinc      1019 Jan 10 01:15 memory_monitor_summary.json
[2026-01-10 01:16:58] -rw------- 1 boinc boinc    281530 Jan 10 01:15 log.47898826._033206.job.log.tgz.1
[2026-01-10 01:16:58] -rw------- 1 boinc boinc      7765 Jan 10 01:15 heartbeat.json
[2026-01-10 01:16:58] -rw------- 1 boinc boinc        95 Jan 10 01:16 pilot_heartbeat.json
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc      8192 Jan 10 01:16 boinc_mmap_file
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc        27 Jan 10 01:16 wrapper_checkpoint.txt
[2026-01-10 01:16:58] -rw------- 1 boinc boinc      4752 Jan 10 01:16 pilotlog.txt
[2026-01-10 01:16:58] -rw------- 1 boinc boinc    883107 Jan 10 01:16 log.47898826._033206.job.log.1
[2026-01-10 01:16:58] -rw------- 1 boinc boinc       357 Jan 10 01:16 output.list
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc       620 Jan 10 01:16 runtime_log
[2026-01-10 01:16:58] -rw------- 1 boinc boinc   1187840 Jan 10 01:16 result.tar.gz
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc      8897 Jan 10 01:16 runtime_log.err
[2026-01-10 01:16:58] -rw------- 1 boinc boinc       659 Jan 10 01:16 Lk4KDmG1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrIgKDm3IE0nm.diag
[2026-01-10 01:16:58] -rw-r--r-- 1 boinc boinc     12739 Jan 10 01:16 stderr.txt
[2026-01-10 01:16:58] HITS file was successfully produced:
[2026-01-10 01:16:58] -rw------- 1 boinc boinc 213964318 Jan 10 01:15 shared/HITS.pool.root.1
[2026-01-10 01:16:58]  *** Contents of shared directory: ***
[2026-01-10 01:16:58] total 429304
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc 223832693 Jan  9 23:34 ATLAS.root_0
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc    592395 Jan  9 23:34 input.tar.gz
[2026-01-10 01:16:58] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:34 start_atlas.sh
[2026-01-10 01:16:58] -rw------- 1 boinc boinc 213964318 Jan 10 01:15 HITS.pool.root.1
[2026-01-10 01:16:58] -rw------- 1 boinc boinc   1187840 Jan 10 01:16 result.tar.gz
01:16:59 (1891475): run_atlas exited; CPU time 23080.059566
01:16:59 (1891475): called boinc_finish(0)

</stderr_txt>
]]>

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