Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 05:04:39 (21744): vboxwrapper version 26210
2026-01-09 05:04:39 (21744): BOINC client version: 8.0.2
2026-01-09 05:04:39 (21744): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-01-09 05:04:39 (21744): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 05:04:40 (21744): Create VM. (boinc_2045dd1006c15897, slot#4)
2026-01-09 05:04:40 (21744): Setting Memory Size for VM. (4800MB)
2026-01-09 05:04:40 (21744): Setting CPU Count for VM. (8)
2026-01-09 05:04:41 (21744): Setting Chipset Options for VM.
2026-01-09 05:04:41 (21744): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 05:04:41 (21744): Setting Boot Options for VM.
2026-01-09 05:04:42 (21744): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 05:04:42 (21744): Enabling VM Network Access.
2026-01-09 05:04:42 (21744): Disabling USB Support for VM.
2026-01-09 05:04:43 (21744): Disabling COM Port Support for VM.
2026-01-09 05:04:43 (21744): Disabling LPT Port Support for VM.
2026-01-09 05:04:43 (21744): Disabling Audio Support for VM.
2026-01-09 05:04:43 (21744): Disabling Clipboard Support for VM.
2026-01-09 05:04:44 (21744): Disabling Drag and Drop Support for VM.
2026-01-09 05:04:44 (21744): Adding storage controller(s) to VM.
2026-01-09 05:04:44 (21744): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 05:04:45 (21744): Adding VirtualBox Guest Additions to VM.
2026-01-09 05:04:45 (21744): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 05:04:45 (21744): forwarding host port 59652 to guest port 80
2026-01-09 05:04:45 (21744): Enabling remote desktop for VM.
2026-01-09 05:04:46 (21744): Required extension pack not installed, remote desktop not enabled.
2026-01-09 05:04:46 (21744): Enabling shared directory for VM.
2026-01-09 05:04:46 (21744): Starting VM using VBoxManage interface. (boinc_2045dd1006c15897, slot#4)
2026-01-09 05:04:51 (21744): Successfully started VM. (PID = '31932')
2026-01-09 05:04:51 (21744): Reporting VM Process ID to BOINC.
2026-01-09 05:04:51 (21744): Guest Log: BIOS: VirtualBox 7.0.6
2026-01-09 05:04:51 (21744): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 05:04:51 (21744): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 05:04:51 (21744): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 05:04:51 (21744): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 05:04:51 (21744): Detected: Web Application Enabled (http://localhost:59652)
2026-01-09 05:04:52 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:05:04 (21744): Preference change detected
2026-01-09 05:05:04 (21744): Setting CPU throttle for VM. (50%)
2026-01-09 05:05:05 (21744): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 05:05:05 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:05:06 (21744): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 05:05:06 (21744): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 05:05:09 (21744): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 05:05:09 (21744): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 05:05:09 (21744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 05:05:15 (21744): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 05:05:15 (21744): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 05:05:20 (21744): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000059 main     Log opened 2026-01-09T05:05:05.235528000Z
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000115 main     OS Product: Linux
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000127 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000138 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000149 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000149 main     Process ID: 1364
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000149 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 05:05:20 (21744): Guest Log: 00:00:00.000462 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 05:05:20 (21744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 05:05:20 (21744): Guest Log: [INFO] Mounting shared directory
2026-01-09 05:05:20 (21744): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 05:05:30 (21744): Guest Log: 00:00:10.003714 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 024 492 813 000ns (GuestNow=1 767 953 129 729 429 000 ns GuestLast=1 767 935 105 236 616 000 ns fSetTimeLastLoop=true )
2026-01-09 05:05:42 (21744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 05:05:42 (21744): Guest Log: [INFO] Detected branch: prod
2026-01-09 05:05:42 (21744): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 05:05:42 (21744): Guest Log: Copying input files
2026-01-09 05:05:43 (21744): Guest Log: Copied input files into RunAtlas.
2026-01-09 05:05:43 (21744): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 05:05:43 (21744): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 05:05:43 (21744): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 05:05:43 (21744): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 05:05:45 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:06:05 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:06:11 (21744): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 05:06:11 (21744): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 05:06:11 (21744): Guest Log: 2.6.3.0 1648 0 32168 154938 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 05:06:11 (21744): Guest Log: copied the webapp to /var/www
2026-01-09 05:06:11 (21744): Guest Log: ATHENA_PROC_NUMBER=8
2026-01-09 05:06:11 (21744): Guest Log: ATHENA_CORE_NUMBER=8
2026-01-09 05:06:11 (21744): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 05:06:11 (21744): Guest Log:  *** Starting ATLAS job. (PandaID=6963157091 taskID=47898826) ***
2026-01-09 05:10:45 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:11:05 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:11:55 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:12:16 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:14:26 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:14:46 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:14:56 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:15:16 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:15:47 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:16:06 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:17:27 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:17:28 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:17:57 (21744): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 05:18:17 (21744): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 05:18:59 (21744): Guest Log:  *** Job finished ***
2026-01-09 05:18:59 (21744): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:27,939 | INFO     | all workflow threads have been joined
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:27,939 | INFO     | end of generic workflow (traces error code: 0)
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:27,939 | INFO     | traces error code: 0
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:27,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,421 | INFO     | PID=6057 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,422 | INFO     | found 0 job(s) in 20 queues
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,422 | INFO     | [monitor] control thread has ended
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,488 [wrapper] ==== pilot stdout END ====
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,492 [wrapper] ==== wrapper stdout RESUME ====
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,495 [wrapper] pilotpid: 6057
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,498 [wrapper] Pilot exit status: 0
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,621 [wrapper] pandaids: 6963157091
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,642 [wrapper] cleanup supervisor_pilot  6063 6058
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,646 [wrapper] Test setup, not cleaning
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,649 [wrapper] apfmon messages muted
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,652 [wrapper] ==== wrapper stdout END ====
2026-01-09 05:18:59 (21744): Guest Log: 2026-01-09 10:16:38,655 [wrapper] ==== wrapper stderr END ====
2026-01-09 05:18:59 (21744): Guest Log:  *** Error codes and diagnostics ***
2026-01-09 05:18:59 (21744): Guest Log:     "exeErrorCode": 0,
2026-01-09 05:18:59 (21744): Guest Log:     "exeErrorDiag": "",
2026-01-09 05:18:59 (21744): Guest Log:     "pilotErrorCode": 1305,
2026-01-09 05:18:59 (21744): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possi",
2026-01-09 05:18:59 (21744): Guest Log:  *** Listing of results directory ***
2026-01-09 05:18:59 (21744): Guest Log: total 4516
2026-01-09 05:18:59 (21744): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Jan  8 21:44 pilot3.tar.gz
2026-01-09 05:18:59 (21744): Guest Log: -rwx------. 1 atlas atlas   36322 Jan  8 21:45 runpilot2-wrapper.sh
2026-01-09 05:18:59 (21744): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jan  8 21:45 queuedata.json
2026-01-09 05:18:59 (21744): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Jan  9 10:05 init_data.xml
2026-01-09 05:18:59 (21744): Guest Log: -rwxr-xr-x. 1 atlas atlas  592401 Jan  9 10:05 input.tar.gz
2026-01-09 05:18:59 (21744): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Jan  9 10:05 start_atlas.sh
2026-01-09 05:18:59 (21744): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan  9 10:05 EVNT.47898824._001244.pool.root.1 -> /data/./ATLAS.root_0
2026-01-09 05:18:59 (21744): Guest Log: -rw-r--r--. 1 atlas atlas    2520 Jan  9 10:05 pandaJob.out
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas  989751 Jan  9 10:06 agis_schedconf.cvmfs.json
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas 1516240 Jan  9 10:06 agis_ddmendpoints.agis.ALL.json
2026-01-09 05:18:59 (21744): Guest Log: drwx------. 5 atlas atlas    4096 Jan  9 10:06 pilot3
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas    1014 Jan  9 10:13 memory_monitor_summary.json
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas  254855 Jan  9 10:13 log.47898826._032220.job.log.tgz.1
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas    9724 Jan  9 10:16 heartbeat.json
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas     744 Jan  9 10:16 pilotlog.txt
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas      95 Jan  9 10:16 pilot_heartbeat.json
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas  135794 Jan  9 10:16 log.47898826._032220.job.log.1
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas     188 Jan  9 10:16 output.list
2026-01-09 05:18:59 (21744): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jan  9 10:16 runtime_log
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas  409600 Jan  9 10:16 result.tar.gz
2026-01-09 05:18:59 (21744): Guest Log: -rw-------. 1 atlas atlas     642 Jan  9 10:16 ya7KDmR0Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1PlKDmaJfaGn.diag
2026-01-09 05:18:59 (21744): Guest Log: -rw-r--r--. 1 atlas atlas    8587 Jan  9 10:16 runtime_log.err
2026-01-09 05:18:59 (21744): Guest Log: Looking for outputfile HITS.47898826._032220.pool.root.1
2026-01-09 05:18:59 (21744): Guest Log: No HITS file was produced
2026-01-09 05:18:59 (21744): Guest Log: Successfully finished the ATLAS job!
2026-01-09 05:18:59 (21744): Guest Log: Copying the results back to the shared directory!
2026-01-09 05:18:59 (21744): Guest Log:  *** Contents of shared directory: ***
2026-01-09 05:18:59 (21744): Guest Log: total 223316
2026-01-09 05:18:59 (21744): Guest Log: -rwxrwxrwx. 1 root root 227640716 Jan  9 10:04 ATLAS.root_0
2026-01-09 05:18:59 (21744): Guest Log: -rwxrwxrwx. 1 root root      9004 Jan  9 10:04 init_data.xml
2026-01-09 05:18:59 (21744): Guest Log: -rwxrwxrwx. 1 root root    592401 Jan  9 09:39 input.tar.gz
2026-01-09 05:18:59 (21744): Guest Log: -rwxrwxrwx. 1 root root    409600 Jan  9  2026 result.tar.gz
2026-01-09 05:18:59 (21744): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 09:39 start_atlas.sh
2026-01-09 05:18:59 (21744): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-09 05:18:59 (21744): VM Completion File Detected.
2026-01-09 05:18:59 (21744): Powering off VM.
2026-01-09 05:18:59 (21744): Successfully stopped VM.
2026-01-09 05:18:59 (21744): Deregistering VM. (boinc_2045dd1006c15897, slot#4)
2026-01-09 05:18:59 (21744): Removing network bandwidth throttle group from VM.
2026-01-09 05:18:59 (21744): Removing VM from VirtualBox.
2026-01-09 05:19:05 (21744): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN