Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:34:02 (2326): wrapper (7.7.26015): starting
04:34:02 (2326): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 04:34:02] Arguments: --nthreads 12
[2026-01-09 04:34:02] Threads: 12
[2026-01-09 04:34:02] Checking for CVMFS
[2026-01-09 04:34:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:34:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:34:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:34:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:34:03] 2.11.2.0 3009 136134 100612 154938 0 58 12324053 20275200 1 130560 0 49222826 99.878 8089133 39475 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 04:34:03] CVMFS is ok
[2026-01-09 04:34:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:34:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:34:03] Further information can be found at the LHC@home message board.
[2026-01-09 04:34:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:34:03] Checking for apptainer binary...
[2026-01-09 04:34:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:34:03] Running /usr/bin/apptainer --version
[2026-01-09 04:34:03] apptainer version 1.3.2-1.el7
[2026-01-09 04:34:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:34:04] c-115-42.aglt2.org
[2026-01-09 04:34:04] apptainer works
[2026-01-09 04:34:04] Set ATHENA_PROC_NUMBER=12
[2026-01-09 04:34:04] Set ATHENA_CORE_NUMBER=12
[2026-01-09 04:34:04] Starting ATLAS job with PandaID=6963152252
[2026-01-09 04:34:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:09:34]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:09:34]  protocol_id=None
[2026-01-09 06:09:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 06:09:34]  replicas=None
[2026-01-09 06:09:34]  scope=mc23_13p6TeV
[2026-01-09 06:09:34]  status=None
[2026-01-09 06:09:34]  status_code=0
[2026-01-09 06:09:34]  storage_token=
[2026-01-09 06:09:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963152252/log.47898826._029053.job.log.tgz.1
[2026-01-09 06:09:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/9a/log.47898826._029053.job.log.tgz.1
[2026-01-09 06:09:34]  workdir=None
[2026-01-09 06:09:34] ]
[2026-01-09 06:09:34] 2026-01-09 11:08:33,755 | INFO     | transferring file log.47898826._029053.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963152252/log.47898826._029053.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 06:09:34] 2026-01-09 11:08:33,755 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963152252/log.47898826._029053.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._029053.job
[2026-01-09 06:09:34] 2026-01-09 11:08:33,776 | INFO     | adding to output.list: log.47898826._029053.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/9a/log.47898826._029053.job.log.tg
[2026-01-09 06:09:34] 2026-01-09 11:08:33,777 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 06:09:34] 2026-01-09 11:08:33,777 | INFO     | summary of transferred files:
[2026-01-09 06:09:34] 2026-01-09 11:08:33,777 | INFO     |  -- lfn=log.47898826._029053.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 06:09:34] 2026-01-09 11:08:33,778 | INFO     | stage-out finished correctly
[2026-01-09 06:09:34] 2026-01-09 11:08:35,008 | INFO     | monitor loop #423: job 0:6963152252 is in state 'finished'
[2026-01-09 06:09:34] 2026-01-09 11:08:35,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:09:34] 2026-01-09 11:08:35,358 | INFO     | time since job start (5656s) is within the limit (349056.0s)
[2026-01-09 06:09:34] 2026-01-09 11:08:37,076 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 06:09:34] 2026-01-09 11:08:37,150 | INFO     | job 6963152252 has state=finished
[2026-01-09 06:09:34] 2026-01-09 11:08:37,151 | INFO     | preparing for final server update for job 6963152252 in state='finished'
[2026-01-09 06:09:34] 2026-01-09 11:08:37,151 | INFO     | this job has now completed (state=finished)
[2026-01-09 06:09:34] 2026-01-09 11:08:37,151 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 06:09:34] 2026-01-09 11:08:37,152 | INFO     | log transfer has been attempted: DONE
[2026-01-09 06:09:34] 2026-01-09 11:08:37,152 | INFO     | job 6963152252 has finished - writing final server update
[2026-01-09 06:09:34] 2026-01-09 11:08:37,152 | INFO     | total number of processed events: 400 (read)
[2026-01-09 06:09:34] 2026-01-09 11:08:37,153 | INFO     | executing command: lscpu
[2026-01-09 06:09:34] 2026-01-09 11:08:37,179 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 06:09:34] 2026-01-09 11:08:37,364 | INFO     | time since job start (5658s) is within the limit (349056.0s)
[2026-01-09 06:09:34] 2026-01-09 11:08:37,511 | INFO     | monitor loop #424: job 0:6963152252 is in state 'finished'
[2026-01-09 06:09:34] 2026-01-09 11:08:37,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:09:34] 2026-01-09 11:08:39,369 | INFO     | time since job start (5660s) is within the limit (349056.0s)
[2026-01-09 06:09:34] 2026-01-09 11:08:40,014 | INFO     | monitor loop #425: job 0:6963152252 is in state 'finished'
[2026-01-09 06:09:34] 2026-01-09 11:08:40,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,374 | INFO     | time since job start (5662s) is within the limit (349056.0s)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,837 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 06:09:34] 2026-01-09 11:08:41,841 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2026-01-09 06:09:34] 2026-01-09 11:08:41,844 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963152252/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,845 | INFO     | extracted standard info from prmon json
[2026-01-09 06:09:34] 2026-01-09 11:08:41,845 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 06:09:34] 2026-01-09 11:08:41,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 06:09:34] 2026-01-09 11:08:41,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 06:09:34] 2026-01-09 11:08:41,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 06:09:34] 2026-01-09 11:08:41,847 | INFO     | fitting pss+swap vs Time
[2026-01-09 06:09:34] 2026-01-09 11:08:41,847 | INFO     | sum of square deviations: 197203697.5
[2026-01-09 06:09:34] 2026-01-09 11:08:41,848 | INFO     | sum of deviations: -14300706867.500004
[2026-01-09 06:09:34] 2026-01-09 11:08:41,848 | INFO     | mean x: 1767954184.5
[2026-01-09 06:09:34] 2026-01-09 11:08:41,848 | INFO     | mean y: 2825496.9418604653
[2026-01-09 06:09:34] 2026-01-09 11:08:41,848 | INFO     | intersect: 128210333105.69002
[2026-01-09 06:09:34] 2026-01-09 11:08:41,848 | INFO     | chi2: 0.06867112063140374
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | current memory leak: -72.52 B/s (using 86 data points, chi2=0.07)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | could have reported an average CPU frequency of 2202 MHz (7 samples)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | ..............................
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | . Timing measurements:
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | . get job = 0 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | . initial setup = 2 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | . payload setup = 7 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,849 | INFO     | . stage-in = 0 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,850 | INFO     | . payload execution = 5627 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,850 | INFO     | . stage-out = 0 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,850 | INFO     | . log creation = 0 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,850 | INFO     | ..............................
[2026-01-09 06:09:34] 2026-01-09 11:08:41,923 | INFO     | 
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | job summary report
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | --------------------------------------------------
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | PanDA job id: 6963152252
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | task id: 47898826
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | errors: (none)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,924 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | pilot state: finished 
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | transexitcode: 0
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | exeerrorcode: 0
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | exeerrordiag: 
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | exitcode: 0
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | exitmsg: OK
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | cpuconsumptiontime: 62131 s
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | nevents: 400
[2026-01-09 06:09:34] 2026-01-09 11:08:41,925 | INFO     | neventsw: 0
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | pid: 12561
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | pgrp: 12561
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | corecount: 12
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | event service: False
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 5637: 2310900, 5638: 2319898, 5641: 2319954, 5646: 2320276}
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | --------------------------------------------------
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | 
[2026-01-09 06:09:34] 2026-01-09 11:08:41,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 06:09:34] 2026-01-09 11:08:41,949 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,950 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,950 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,950 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,950 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,952 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,953 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:09:34] 2026-01-09 11:08:41,953 | INFO     | job 6963152252 has completed (purged errors)
[2026-01-09 06:09:34] 2026-01-09 11:08:41,953 | INFO     | overall cleanup function is called
[2026-01-09 06:09:34] 2026-01-09 11:08:42,491 | INFO     | PID=6131 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 06:09:34] 2026-01-09 11:08:42,959 | INFO     | --- collectZombieJob: --- 10, [12561]
[2026-01-09 06:09:34] 2026-01-09 11:08:42,959 | INFO     | zombie collector waiting for pid 12561
[2026-01-09 06:09:34] 2026-01-09 11:08:42,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:09:34] 2026-01-09 11:08:42,960 | INFO     | collected zombie processes
[2026-01-09 06:09:34] 2026-01-09 11:08:42,960 | INFO     | will attempt to kill all subprocesses of pid=12561
[2026-01-09 06:09:34] 2026-01-09 11:08:43,049 | INFO     | process IDs to be killed: [12561] (in reverse order)
[2026-01-09 06:09:34] 2026-01-09 11:08:43,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:09:34] 2026-01-09 11:08:43,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:09:34] 2026-01-09 11:08:43,103 | INFO     | did not find any defunct processes belonging to 12561
[2026-01-09 06:09:34] 2026-01-09 11:08:43,106 | INFO     | did not find any defunct processes belonging to 12561
[2026-01-09 06:09:34] 2026-01-09 11:08:43,106 | INFO     | ready for new job
[2026-01-09 06:09:34] 2026-01-09 11:08:43,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:09:34] 2026-01-09 11:08:43,108 | INFO     | ***************************************
[2026-01-09 06:09:34] 2026-01-09 11:08:43,108 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:09:34] 2026-01-09 11:08:43,108 | INFO     | ***************************************
[2026-01-09 06:09:34] 2026-01-09 11:08:43,108 | INFO     | 
[2026-01-09 06:09:34] 2026-01-09 11:08:43,108 | INFO     | architecture information:
[2026-01-09 06:09:34] 2026-01-09 11:08:43,109 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:09:34] 2026-01-09 11:08:43,123 | INFO     | cat /etc/os-release:
[2026-01-09 06:09:34] NAME="CentOS Linux"
[2026-01-09 06:09:34] VERSION="7 (Core)"
[2026-01-09 06:09:34] ID="centos"
[2026-01-09 06:09:34] ID_LIKE="rhel fedora"
[2026-01-09 06:09:34] VERSION_ID="7"
[2026-01-09 06:09:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:09:34] ANSI_COLOR="0;31"
[2026-01-09 06:09:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:09:34] HOME_URL="https://www.centos.org/"
[2026-01-09 06:09:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:09:34] 
[2026-01-09 06:09:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:09:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:09:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:09:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:09:34] 
[2026-01-09 06:09:34] 2026-01-09 11:08:43,124 | INFO     | ***************************************
[2026-01-09 06:09:34] 2026-01-09 11:08:43,627 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 06:09:34] 2026-01-09 11:08:43,650 | INFO     | sufficient remaining disk space (18529386496 B)
[2026-01-09 06:09:34] 2026-01-09 11:08:43,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:09:34] 2026-01-09 11:08:43,651 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:09:34] 2026-01-09 11:08:43,651 | INFO     | update_server=False
[2026-01-09 06:09:34] 2026-01-09 11:08:43,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:09:34] 2026-01-09 11:08:43,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:09:34] 2026-01-09 11:08:43,652 | INFO     | aborting loop
[2026-01-09 06:09:34] 2026-01-09 11:08:43,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:09:34] 2026-01-09 11:08:43,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:09:34] 2026-01-09 11:08:43,953 | INFO     | all job control threads have been joined
[2026-01-09 06:09:34] 2026-01-09 11:08:44,241 | INFO     | all payload control threads have been joined
[2026-01-09 06:09:34] 2026-01-09 11:08:44,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:09:34] 2026-01-09 11:08:44,654 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,657 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,658 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,719 | INFO     | all data control threads have been joined
[2026-01-09 06:09:34] 2026-01-09 11:08:44,793 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,874 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,926 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:44,956 | INFO     | [job] control thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:45,226 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:45,246 | INFO     | [payload] control thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:45,465 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:45,721 | INFO     | [data] control thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:45,952 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:46,073 | INFO     | [job] validate thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:46,109 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:46,380 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:08:47,659 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:09:34] 2026-01-09 11:09:14,676 | INFO     | PID=6131 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 06:09:34] 2026-01-09 11:09:14,676 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:09:34] 2026-01-09 11:09:14,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:09:34] 2026-01-09 11:09:14,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:09:34] 2026-01-09 11:09:27,908 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:09:34] 2026-01-09 11:09:29,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034258134848)>', '<ExcThread(monitor, started 140033348581120)>']
[2026-01-09 06:09:34] 2026-01-09 11:09:29,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:09:34] 2026-01-09 11:09:29,742 | INFO     | [monitor] control thread has ended
[2026-01-09 06:09:34] 2026-01-09 11:09:34,615 | INFO     | all workflow threads have been joined
[2026-01-09 06:09:34] 2026-01-09 11:09:34,615 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:09:34] 2026-01-09 11:09:34,615 | INFO     | traces error code: 0
[2026-01-09 06:09:34] 2026-01-09 11:09:34,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:09:34] 2026-01-09 11:09:34,696 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:09:34] 2026-01-09 11:09:34,700 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:09:34] 2026-01-09 11:09:34,704 [wrapper] pilotpid: 6131
[2026-01-09 06:09:34] 2026-01-09 11:09:34,707 [wrapper] Pilot exit status: 0
[2026-01-09 06:09:34] 2026-01-09 11:09:34,723 [wrapper] pandaids: 6963152252
[2026-01-09 06:09:34] 2026-01-09 11:09:34,770 [wrapper] cleanup supervisor_pilot 21731 6132
[2026-01-09 06:09:34] 2026-01-09 11:09:34,774 [wrapper] Test setup, not cleaning
[2026-01-09 06:09:34] 2026-01-09 11:09:34,778 [wrapper] apfmon messages muted
[2026-01-09 06:09:34] 2026-01-09 11:09:34,782 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:09:34] 2026-01-09 11:09:34,786 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:09:34]  *** Error codes and diagnostics ***
[2026-01-09 06:09:34]     "exeErrorCode": 0,
[2026-01-09 06:09:34]     "exeErrorDiag": "",
[2026-01-09 06:09:34]     "pilotErrorCode": 0,
[2026-01-09 06:09:34]     "pilotErrorDiag": "",
[2026-01-09 06:09:34]  *** Listing of results directory ***
[2026-01-09 06:09:34] total 445804
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 06:09:34] -rwx------ 1 boincer umatlas     36322 Jan  8 11:04 runpilot2-wrapper.sh
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas       100 Jan  9 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:09:34] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 04:34 run_atlas
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas       105 Jan  9 04:34 job.xml
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas 227018089 Jan  9 04:34 EVNT.47898824._001138.pool.root.1
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:34 start_atlas.sh
[2026-01-09 06:09:34] drwxrwx--x 2 boincer umatlas      4096 Jan  9 04:34 shared
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 04:34 input.tar.gz
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas         0 Jan  9 04:34 boinc_lockfile
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 04:34 pandaJob.out
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas        57 Jan  9 04:34 setup.sh.local
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas    989751 Jan  9 04:34 agis_schedconf.cvmfs.json
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas   1516240 Jan  9 04:34 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:09:34] drwx------ 5 boincer umatlas      4096 Jan  9 04:34 pilot3
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas      5954 Jan  9 06:02 init_data.xml
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas 223163129 Jan  9 06:08 HITS.47898826._029053.pool.root.1
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas       529 Jan  9 06:08 boinc_task_state.xml
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas      1047 Jan  9 06:08 memory_monitor_summary.json
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas        95 Jan  9 06:08 pilot_heartbeat.json
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas    392457 Jan  9 06:08 log.47898826._029053.job.log.tgz.1
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas      7854 Jan  9 06:08 heartbeat.json
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 06:09 boinc_mmap_file
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas        27 Jan  9 06:09 wrapper_checkpoint.txt
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas      4745 Jan  9 06:09 pilotlog.txt
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas    811093 Jan  9 06:09 log.47898826._029053.job.log.1
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas       357 Jan  9 06:09 output.list
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas       620 Jan  9 06:09 runtime_log
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas   1218560 Jan  9 06:09 result.tar.gz
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 06:09 runtime_log.err
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas       659 Jan  9 06:09 4U5NDmff7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkxkKDmNfM1un.diag
[2026-01-09 06:09:34] -rw-r--r-- 1 boincer umatlas     21955 Jan  9 06:09 stderr.txt
[2026-01-09 06:09:34] HITS file was successfully produced:
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas 223163129 Jan  9 06:08 shared/HITS.pool.root.1
[2026-01-09 06:09:34]  *** Contents of shared directory: ***
[2026-01-09 06:09:34] total 441428
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas 227018089 Jan  9 04:34 ATLAS.root_0
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:34 start_atlas.sh
[2026-01-09 06:09:34] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 04:34 input.tar.gz
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas 223163129 Jan  9 06:08 HITS.pool.root.1
[2026-01-09 06:09:34] -rw------- 1 boincer umatlas   1218560 Jan  9 06:09 result.tar.gz
06:09:36 (2326): run_atlas exited; CPU time 62096.643994
06:09:36 (2326): called boinc_finish(0)

</stderr_txt>
]]>

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