Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:24:08 (3097855): wrapper (7.7.26015): starting
04:24:08 (3097855): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 04:24:08] Arguments: --nthreads 8
[2026-01-09 04:24:08] Threads: 8
[2026-01-09 04:24:08] Checking for CVMFS
[2026-01-09 04:24:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:24:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:24:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:24:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:24:09] 2.13.3.0 11772 93180 230968 154938 2 354 30089239 32935936 19453 16776704 0 499300801 99.506 659342313 36824 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 04:24:09] CVMFS is ok
[2026-01-09 04:24:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:24:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:24:09] Further information can be found at the LHC@home message board.
[2026-01-09 04:24:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:24:09] Checking for apptainer binary...
[2026-01-09 04:24:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:24:09] Running /usr/bin/apptainer --version
[2026-01-09 04:24:09] apptainer version 1.4.5-2.el9
[2026-01-09 04:24:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:24:09] c7-3-28.aglt2.org
[2026-01-09 04:24:09] apptainer works
[2026-01-09 04:24:09] Set ATHENA_PROC_NUMBER=8
[2026-01-09 04:24:09] Set ATHENA_CORE_NUMBER=8
[2026-01-09 04:24:09] Starting ATLAS job with PandaID=6963146113
[2026-01-09 04:24:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:11 (3097855): BOINC client no longer exists - exiting
07:20:11 (3097855): timer handler: client dead, exiting
07:27:37 (4039163): wrapper (7.7.26015): starting
07:27:37 (4039163): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 07:27:37] Arguments: --nthreads 9
[2026-01-09 07:27:37] Threads: 9
[2026-01-09 07:27:37] This job has been restarted, cleaning up previous attempt
[2026-01-09 07:27:37] Checking for CVMFS
[2026-01-09 07:27:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:27:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:27:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:27:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:27:38] 2.13.3.0 11772 93364 236688 154942 3 457 23494897 32935936 18561 16776704 0 500167368 99.505 662082271 36874 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 07:27:38] CVMFS is ok
[2026-01-09 07:27:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:27:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:27:38] Further information can be found at the LHC@home message board.
[2026-01-09 07:27:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:27:38] Checking for apptainer binary...
[2026-01-09 07:27:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:27:38] Running /usr/bin/apptainer --version
[2026-01-09 07:27:38] apptainer version 1.4.5-2.el9
[2026-01-09 07:27:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:27:38] c7-3-28.aglt2.org
[2026-01-09 07:27:38] apptainer works
[2026-01-09 07:27:38] Set ATHENA_PROC_NUMBER=9
[2026-01-09 07:27:38] Set ATHENA_CORE_NUMBER=9
[2026-01-09 07:27:38] Starting ATLAS job with PandaID=6963146113
[2026-01-09 07:27:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:09:53]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:09:53] 2026-01-09 19:09:12,596 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 14:09:53] 2026-01-09 19:09:12,602 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3256.289895833335
[2026-01-09 14:09:53] 2026-01-09 19:09:12,616 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963146113/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,617 | INFO     | extracted standard info from prmon json
[2026-01-09 14:09:53] 2026-01-09 19:09:12,617 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:09:53] 2026-01-09 19:09:12,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:09:53] 2026-01-09 19:09:12,617 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:09:53] 2026-01-09 19:09:12,617 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:09:53] 2026-01-09 19:09:12,624 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:09:53] 2026-01-09 19:09:12,625 | INFO     | sum of square deviations: 18965555600.47696
[2026-01-09 14:09:53] 2026-01-09 19:09:12,628 | INFO     | sum of deviations: 86453325378.31471
[2026-01-09 14:09:53] 2026-01-09 19:09:12,652 | INFO     | mean x: 1767973715.5076141
[2026-01-09 14:09:53] 2026-01-09 19:09:12,652 | INFO     | mean y: 2518794.228426396
[2026-01-09 14:09:53] 2026-01-09 19:09:12,652 | INFO     | intersect: -8056681268.607796
[2026-01-09 14:09:53] 2026-01-09 19:09:12,653 | INFO     | chi2: 3.3633009698089396
[2026-01-09 14:09:53] 2026-01-09 19:09:12,654 | INFO     | sum of square deviations: 18252616787.989723
[2026-01-09 14:09:53] 2026-01-09 19:09:12,680 | INFO     | sum of deviations: 139495509798.1309
[2026-01-09 14:09:53] 2026-01-09 19:09:12,680 | INFO     | mean x: 1767973563.0051415
[2026-01-09 14:09:53] 2026-01-09 19:09:12,680 | INFO     | mean y: 2530049.4344473006
[2026-01-09 14:09:53] 2026-01-09 19:09:12,680 | INFO     | intersect: -13509196863.240324
[2026-01-09 14:09:53] 2026-01-09 19:09:12,680 | INFO     | chi2: 1.7196408714352802
[2026-01-09 14:09:53] 2026-01-09 19:09:12,681 | INFO     | current chi2=1.7196408714352802 (change=48.870443446131176 %)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,681 | INFO     | sum of square deviations: 17557771093.997364
[2026-01-09 14:09:53] 2026-01-09 19:09:12,710 | INFO     | sum of deviations: 136875061359.63554
[2026-01-09 14:09:53] 2026-01-09 19:09:12,710 | INFO     | mean x: 1767973410.5026042
[2026-01-09 14:09:53] 2026-01-09 19:09:12,710 | INFO     | mean y: 2529474.3645833335
[2026-01-09 14:09:53] 2026-01-09 19:09:12,710 | INFO     | intersect: -13780055328.069702
[2026-01-09 14:09:53] 2026-01-09 19:09:12,711 | INFO     | chi2: 1.719430197196771
[2026-01-09 14:09:53] 2026-01-09 19:09:12,715 | INFO     | current chi2=1.719430197196771 (change=0.01225106020732414 %)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,715 | INFO     | right removable region: 383
[2026-01-09 14:09:53] 2026-01-09 19:09:12,715 | INFO     | sum of square deviations: 18252638992.976826
[2026-01-09 14:09:53] 2026-01-09 19:09:12,723 | INFO     | sum of deviations: 12168631603.948566
[2026-01-09 14:09:53] 2026-01-09 19:09:12,723 | INFO     | mean x: 1767973868.0077121
[2026-01-09 14:09:53] 2026-01-09 19:09:12,723 | INFO     | mean y: 2534616.683804627
[2026-01-09 14:09:53] 2026-01-09 19:09:12,723 | INFO     | intersect: -1176134544.168598
[2026-01-09 14:09:53] 2026-01-09 19:09:12,724 | INFO     | chi2: 1.7188413733721282
[2026-01-09 14:09:53] 2026-01-09 19:09:12,724 | INFO     | current chi2=1.7188413733721282 (change=48.89421467773754 %)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,724 | INFO     | sum of square deviations: 17557815747.976562
[2026-01-09 14:09:53] 2026-01-09 19:09:12,732 | INFO     | sum of deviations: -879787677.5390625
[2026-01-09 14:09:53] 2026-01-09 19:09:12,732 | INFO     | mean x: 1767974020.5078125
[2026-01-09 14:09:53] 2026-01-09 19:09:12,732 | INFO     | mean y: 2537469.6796875
[2026-01-09 14:09:53] 2026-01-09 19:09:12,732 | INFO     | intersect: 91127176.95185903
[2026-01-09 14:09:53] 2026-01-09 19:09:12,733 | INFO     | chi2: 1.676036918149145
[2026-01-09 14:09:53] 2026-01-09 19:09:12,733 | INFO     | current chi2=1.676036918149145 (change=2.490308639651066 %)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,733 | INFO     | left removable region: 20
[2026-01-09 14:09:53] 2026-01-09 19:09:12,733 | INFO     | sum of square deviations: 14831847196.997185
[2026-01-09 14:09:53] 2026-01-09 19:09:12,740 | INFO     | sum of deviations: 40833824729.54275
[2026-01-09 14:09:53] 2026-01-09 19:09:12,740 | INFO     | mean x: 1767973990.002755
[2026-01-09 14:09:53] 2026-01-09 19:09:12,740 | INFO     | mean y: 2551137.4573002756
[2026-01-09 14:09:53] 2026-01-09 19:09:12,741 | INFO     | intersect: -4864889787.148428
[2026-01-09 14:09:53] 2026-01-09 19:09:12,741 | INFO     | chi2: 0.004007167612859988
[2026-01-09 14:09:53] 2026-01-09 19:09:12,741 | INFO     | current memory leak: 2.75 B/s (using 363 data points, chi2=0.00)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | could have reported an average CPU frequency of 3244 MHz (17 samples)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | ..............................
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . Timing measurements:
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . get job = 0 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . initial setup = 2 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . payload setup = 13 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . stage-in = 0 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,742 | INFO     | . payload execution = 24005 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,743 | INFO     | . stage-out = 5 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,743 | INFO     | . log creation = 0 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,743 | INFO     | ..............................
[2026-01-09 14:09:53] 2026-01-09 19:09:12,849 | INFO     | 
[2026-01-09 14:09:53] 2026-01-09 19:09:12,857 | INFO     | job summary report
[2026-01-09 14:09:53] 2026-01-09 19:09:12,857 | INFO     | --------------------------------------------------
[2026-01-09 14:09:53] 2026-01-09 19:09:12,857 | INFO     | PanDA job id: 6963146113
[2026-01-09 14:09:53] 2026-01-09 19:09:12,857 | INFO     | task id: 47898826
[2026-01-09 14:09:53] 2026-01-09 19:09:12,857 | INFO     | errors: (none)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | pilot state: finished 
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | transexitcode: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | exeerrorcode: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | exeerrordiag: 
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | exitcode: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | exitmsg: OK
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | cpuconsumptiontime: 45393 s
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | nevents: 400
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | neventsw: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | pid: 4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | pgrp: 4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | corecount: 9
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | event service: False
[2026-01-09 14:09:53] 2026-01-09 19:09:12,858 | INFO     | sizes: {0: 2283969, 9: 2284231, 11: 2284259, 24022: 2319197, 24023: 2319196, 24029: 2328250, 24030: 2328434, 24053: 2328692}
[2026-01-09 14:09:53] 2026-01-09 19:09:12,859 | INFO     | --------------------------------------------------
[2026-01-09 14:09:53] 2026-01-09 19:09:12,859 | INFO     | 
[2026-01-09 14:09:53] 2026-01-09 19:09:12,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 14:09:53] 2026-01-09 19:09:12,962 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | job 6963146113 has completed (purged errors)
[2026-01-09 14:09:53] 2026-01-09 19:09:12,964 | INFO     | overall cleanup function is called
[2026-01-09 14:09:53] 2026-01-09 19:09:14,002 | INFO     | --- collectZombieJob: --- 10, [4102737]
[2026-01-09 14:09:53] 2026-01-09 19:09:14,002 | INFO     | zombie collector waiting for pid 4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:14,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:09:53] 2026-01-09 19:09:14,002 | INFO     | collected zombie processes
[2026-01-09 14:09:53] 2026-01-09 19:09:14,002 | INFO     | will attempt to kill all subprocesses of pid=4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:17,132 | INFO     | PID=4061028 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:09:53] 2026-01-09 19:09:17,155 | INFO     | .. there are 27 such processes running
[2026-01-09 14:09:53] 2026-01-09 19:09:17,222 | INFO     | process IDs to be killed: [4102737] (in reverse order)
[2026-01-09 14:09:53] 2026-01-09 19:09:17,500 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:09:53] 2026-01-09 19:09:17,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:09:53] 2026-01-09 19:09:17,522 | INFO     | did not find any defunct processes belonging to 4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:17,540 | INFO     | did not find any defunct processes belonging to 4102737
[2026-01-09 14:09:53] 2026-01-09 19:09:17,540 | INFO     | ready for new job
[2026-01-09 14:09:53] 2026-01-09 19:09:17,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:09:53] 2026-01-09 19:09:17,544 | INFO     | ***************************************
[2026-01-09 14:09:53] 2026-01-09 19:09:17,545 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:09:53] 2026-01-09 19:09:17,545 | INFO     | ***************************************
[2026-01-09 14:09:53] 2026-01-09 19:09:17,545 | INFO     | 
[2026-01-09 14:09:53] 2026-01-09 19:09:17,567 | INFO     | architecture information:
[2026-01-09 14:09:53] 2026-01-09 19:09:17,584 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:09:53] 2026-01-09 19:09:17,672 | INFO     | cat /etc/os-release:
[2026-01-09 14:09:53] NAME="CentOS Linux"
[2026-01-09 14:09:53] VERSION="7 (Core)"
[2026-01-09 14:09:53] ID="centos"
[2026-01-09 14:09:53] ID_LIKE="rhel fedora"
[2026-01-09 14:09:53] VERSION_ID="7"
[2026-01-09 14:09:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:09:53] ANSI_COLOR="0;31"
[2026-01-09 14:09:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:09:53] HOME_URL="https://www.centos.org/"
[2026-01-09 14:09:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:09:53] 
[2026-01-09 14:09:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:09:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:09:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:09:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:09:53] 
[2026-01-09 14:09:53] 2026-01-09 19:09:17,673 | INFO     | ***************************************
[2026-01-09 14:09:53] 2026-01-09 19:09:18,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 14:09:53] 2026-01-09 19:09:18,306 | INFO     | sufficient remaining disk space (73693921280 B)
[2026-01-09 14:09:53] 2026-01-09 19:09:18,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:09:53] 2026-01-09 19:09:18,307 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:09:53] 2026-01-09 19:09:18,307 | INFO     | update_server=False
[2026-01-09 14:09:53] 2026-01-09 19:09:18,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:09:53] 2026-01-09 19:09:18,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:09:53] 2026-01-09 19:09:18,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:09:53] 2026-01-09 19:09:18,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:09:53] 2026-01-09 19:09:18,320 | INFO     | aborting loop
[2026-01-09 14:09:53] 2026-01-09 19:09:18,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:09:53] 2026-01-09 19:09:18,821 | INFO     | all data control threads have been joined
[2026-01-09 14:09:53] 2026-01-09 19:09:18,877 | INFO     | all job control threads have been joined
[2026-01-09 14:09:53] 2026-01-09 19:09:19,313 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,315 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,359 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,453 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,505 | INFO     | all payload control threads have been joined
[2026-01-09 14:09:53] 2026-01-09 19:09:19,828 | INFO     | [data] control thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,884 | INFO     | [job] control thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:19,930 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,082 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,192 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,272 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,365 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,516 | INFO     | [job] validate thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,565 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,583 | INFO     | [payload] control thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:20,565 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:22,688 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:09:53] 2026-01-09 19:09:42,484 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:09:53] 2026-01-09 19:09:42,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665052759872)>', '<ExcThread(monitor, started 139664702805760)>']
[2026-01-09 14:09:53] 2026-01-09 19:09:47,645 | INFO     | all workflow threads have been joined
[2026-01-09 14:09:53] 2026-01-09 19:09:47,645 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:09:53] 2026-01-09 19:09:47,645 | INFO     | traces error code: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:47,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:09:53] 2026-01-09 19:09:51,051 | INFO     | PID=4061028 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:09:53] 2026-01-09 19:09:51,052 | INFO     | .. there are 27 such processes running
[2026-01-09 14:09:53] 2026-01-09 19:09:51,056 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:09:53] 2026-01-09 19:09:51,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:09:53] 2026-01-09 19:09:51,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:09:53] 2026-01-09 19:09:51,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:09:53] 2026-01-09 19:09:51,057 | INFO     | [monitor] control thread has ended
[2026-01-09 14:09:53] 2026-01-09 19:09:53,599 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:09:53] 2026-01-09 19:09:53,606 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:09:53] 2026-01-09 19:09:53,623 [wrapper] pilotpid: 4061028
[2026-01-09 14:09:53] 2026-01-09 19:09:53,632 [wrapper] Pilot exit status: 0
[2026-01-09 14:09:53] 2026-01-09 19:09:53,673 [wrapper] pandaids: 6963146113 6963146113
[2026-01-09 14:09:53] 2026-01-09 19:09:53,817 [wrapper] cleanup supervisor_pilot 2152419 4061029
[2026-01-09 14:09:53] 2026-01-09 19:09:53,820 [wrapper] Test setup, not cleaning
[2026-01-09 14:09:53] 2026-01-09 19:09:53,824 [wrapper] apfmon messages muted
[2026-01-09 14:09:53] 2026-01-09 19:09:53,829 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:09:53] 2026-01-09 19:09:53,832 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:09:53]  *** Error codes and diagnostics ***
[2026-01-09 14:09:53]     "exeErrorCode": 0,
[2026-01-09 14:09:53]     "exeErrorDiag": "",
[2026-01-09 14:09:53]     "pilotErrorCode": 0,
[2026-01-09 14:09:53]     "pilotErrorDiag": "",
[2026-01-09 14:09:53]  *** Listing of results directory ***
[2026-01-09 14:09:53] total 669344
[2026-01-09 14:09:53] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 14:09:53] -rwx------. 1 boincer umatlas     36322 Jan  8 10:05 runpilot2-wrapper.sh
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:07 queuedata.json
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas       100 Jan  9 04:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:09:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 04:24 run_atlas
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas       105 Jan  9 04:24 job.xml
[2026-01-09 14:09:53] -rw-r--r--. 3 boincer umatlas 224440054 Jan  9 04:24 EVNT.47898824._001046.pool.root.1
[2026-01-09 14:09:53] -rw-r--r--. 3 boincer umatlas 224440054 Jan  9 04:24 ATLAS.root_0
[2026-01-09 14:09:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 04:24 start_atlas.sh
[2026-01-09 14:09:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 04:24 shared
[2026-01-09 14:09:53] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 04:24 input.tar.gz
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas         0 Jan  9 04:24 boinc_lockfile
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 07:27 pandaJob.out
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas        57 Jan  9 07:27 setup.sh.local
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas    989377 Jan  9 07:27 agis_schedconf.cvmfs.json
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas      6945 Jan  9 14:00 init_data.xml
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas 225750112 Jan  9 14:07 HITS.47898826._026543.pool.root.1
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas       531 Jan  9 14:07 boinc_task_state.xml
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas      1045 Jan  9 14:08 memory_monitor_summary.json
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas   1516240 Jan  9 14:08 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas    596352 Jan  9 14:08 log.47898826._026543.job.log.tgz.1
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas      7787 Jan  9 14:09 heartbeat.json
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas        96 Jan  9 14:09 pilot_heartbeat.json
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas       823 Jan  9 14:09 pilotlog.txt
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas        28 Jan  9 14:09 wrapper_checkpoint.txt
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 14:09 boinc_mmap_file
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas   2831753 Jan  9 14:09 log.47898826._026543.job.log.1
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas       357 Jan  9 14:09 output.list
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas       620 Jan  9 14:09 runtime_log
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas   3450880 Jan  9 14:09 result.tar.gz
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas      9423 Jan  9 14:09 runtime_log.err
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas       784 Jan  9 14:09 AeGKDmNl6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyYfKDmatb5Gn.diag
[2026-01-09 14:09:53] -rw-r--r--. 1 boincer umatlas     23551 Jan  9 14:09 stderr.txt
[2026-01-09 14:09:53] HITS file was successfully produced:
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas 225750112 Jan  9 14:07 shared/HITS.pool.root.1
[2026-01-09 14:09:53]  *** Contents of shared directory: ***
[2026-01-09 14:09:53] total 443616
[2026-01-09 14:09:53] -rw-r--r--. 3 boincer umatlas 224440054 Jan  9 04:24 ATLAS.root_0
[2026-01-09 14:09:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 04:24 start_atlas.sh
[2026-01-09 14:09:53] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 04:24 input.tar.gz
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas 225750112 Jan  9 14:07 HITS.pool.root.1
[2026-01-09 14:09:53] -rw-------. 1 boincer umatlas   3450880 Jan  9 14:09 result.tar.gz
14:09:55 (4039163): run_atlas exited; CPU time 46238.262933
14:09:55 (4039163): called boinc_finish(0)

</stderr_txt>
]]>

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