Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:45:13 (1339993): wrapper (7.7.26015): starting
13:45:13 (1339993): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 13:45:13] Arguments: --nthreads 4
[2026-01-09 13:45:13] Threads: 4
[2026-01-09 13:45:13] Checking for CVMFS
[2026-01-09 13:45:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:45:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:45:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:45:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:45:13] 2.9.2.0 645782 2319 93756 154944 3 56 32400668 36864001 0 130560 0 1799440 99.989 88264 4871 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 13:45:13] CVMFS is ok
[2026-01-09 13:45:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:45:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:45:13] Further information can be found at the LHC@home message board.
[2026-01-09 13:45:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:45:13] Checking for apptainer binary...
[2026-01-09 13:45:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:45:13] Running /usr/bin/apptainer --version
[2026-01-09 13:45:13] apptainer version 1.4.1-1.1
[2026-01-09 13:45:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:45:13] thA315b
[2026-01-09 13:45:13] apptainer works
[2026-01-09 13:45:13] Set ATHENA_PROC_NUMBER=4
[2026-01-09 13:45:13] Set ATHENA_CORE_NUMBER=4
[2026-01-09 13:45:13] Starting ATLAS job with PandaID=6963145477
[2026-01-09 13:45:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:11:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:11:32] 2026-01-09 14:11:01,455 | INFO     | job 6963145477 has completed (purged errors)
[2026-01-09 15:11:32] 2026-01-09 14:11:01,455 | INFO     | overall cleanup function is called
[2026-01-09 15:11:32] 2026-01-09 14:11:02,461 | INFO     | --- collectZombieJob: --- 10, [1350367]
[2026-01-09 15:11:32] 2026-01-09 14:11:02,462 | INFO     | zombie collector waiting for pid 1350367
[2026-01-09 15:11:32] 2026-01-09 14:11:02,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:11:32] 2026-01-09 14:11:02,462 | INFO     | collected zombie processes
[2026-01-09 15:11:32] 2026-01-09 14:11:02,462 | INFO     | will attempt to kill all subprocesses of pid=1350367
[2026-01-09 15:11:32] 2026-01-09 14:11:02,508 | INFO     | process IDs to be killed: [1350367] (in reverse order)
[2026-01-09 15:11:32] 2026-01-09 14:11:02,535 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:11:32] 2026-01-09 14:11:02,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:11:32] 2026-01-09 14:11:02,537 | INFO     | did not find any defunct processes belonging to 1350367
[2026-01-09 15:11:32] 2026-01-09 14:11:02,538 | INFO     | did not find any defunct processes belonging to 1350367
[2026-01-09 15:11:32] 2026-01-09 14:11:02,538 | INFO     | ready for new job
[2026-01-09 15:11:32] 2026-01-09 14:11:02,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | ***************************************
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | ***************************************
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | 
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | architecture information:
[2026-01-09 15:11:32] 2026-01-09 14:11:02,539 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:11:32] 2026-01-09 14:11:02,549 | INFO     | cat /etc/os-release:
[2026-01-09 15:11:32] NAME="CentOS Linux"
[2026-01-09 15:11:32] VERSION="7 (Core)"
[2026-01-09 15:11:32] ID="centos"
[2026-01-09 15:11:32] ID_LIKE="rhel fedora"
[2026-01-09 15:11:32] VERSION_ID="7"
[2026-01-09 15:11:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:11:32] ANSI_COLOR="0;31"
[2026-01-09 15:11:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:11:32] HOME_URL="https://www.centos.org/"
[2026-01-09 15:11:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:11:32] 
[2026-01-09 15:11:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:11:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:11:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:11:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:11:32] 
[2026-01-09 15:11:32] 2026-01-09 14:11:02,549 | INFO     | ***************************************
[2026-01-09 15:11:32] 2026-01-09 14:11:03,052 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 15:11:32] 2026-01-09 14:11:03,066 | INFO     | sufficient remaining disk space (328156053504 B)
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | INFO     | update_server=False
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:11:32] 2026-01-09 14:11:03,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:11:32] 2026-01-09 14:11:03,173 | INFO     | all data control threads have been joined
[2026-01-09 15:11:32] 2026-01-09 14:11:03,357 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 15:11:32] 2026-01-09 14:11:03,357 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 15:11:32] 2026-01-09 14:11:03,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:11:32] 2026-01-09 14:11:03,357 | INFO     | will abort loop
[2026-01-09 15:11:32] 2026-01-09 14:11:03,722 | INFO     | all payload control threads have been joined
[2026-01-09 15:11:32] 2026-01-09 14:11:04,073 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,073 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,073 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,179 | INFO     | [data] control thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,309 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,363 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,413 | INFO     | all job control threads have been joined
[2026-01-09 15:11:32] 2026-01-09 14:11:04,511 | INFO     | [job] validate thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,541 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,631 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,728 | INFO     | [payload] control thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,765 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:04,947 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:05,073 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:05,418 | INFO     | [job] control thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:05,473 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:05,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:11:32] 2026-01-09 14:11:09,845 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:11:32] 2026-01-09 14:11:26,940 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:11:32] 2026-01-09 14:11:27,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123322660672)>', '<ExcThread(monitor, started 140122553046784)>']
[2026-01-09 15:11:32] 2026-01-09 14:11:32,093 | INFO     | all workflow threads have been joined
[2026-01-09 15:11:32] 2026-01-09 14:11:32,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:11:32] 2026-01-09 14:11:32,093 | INFO     | traces error code: 0
[2026-01-09 15:11:32] 2026-01-09 14:11:32,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | INFO     | PID=1343794 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:11:32] 2026-01-09 14:11:32,721 | INFO     | [monitor] control thread has ended
[2026-01-09 15:11:32] 2026-01-09 14:11:32,771 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:11:32] 2026-01-09 14:11:32,774 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:11:32] 2026-01-09 14:11:32,776 [wrapper] pilotpid: 1343794
[2026-01-09 15:11:32] 2026-01-09 14:11:32,779 [wrapper] Pilot exit status: 0
[2026-01-09 15:11:32] 2026-01-09 14:11:32,787 [wrapper] pandaids: 6963145477
[2026-01-09 15:11:32] 2026-01-09 14:11:32,805 [wrapper] cleanup supervisor_pilot 1362496 1343795
[2026-01-09 15:11:32] 2026-01-09 14:11:32,807 [wrapper] Test setup, not cleaning
[2026-01-09 15:11:32] 2026-01-09 14:11:32,810 [wrapper] apfmon messages muted
[2026-01-09 15:11:32] 2026-01-09 14:11:32,812 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:11:32] 2026-01-09 14:11:32,815 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:11:32]  *** Error codes and diagnostics ***
[2026-01-09 15:11:32]     "exeErrorCode": 0,
[2026-01-09 15:11:32]     "exeErrorDiag": "",
[2026-01-09 15:11:32]     "pilotErrorCode": 0,
[2026-01-09 15:11:32]     "pilotErrorDiag": "",
[2026-01-09 15:11:32]  *** Listing of results directory ***
[2026-01-09 15:11:32] total 437616
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:02 queuedata.json
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 15:11:32] -rwx------ 1 boinc boinc     36322 Jan  8 16:02 runpilot2-wrapper.sh
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc       100 Jan  9 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:11:32] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 13:45 run_atlas
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc       105 Jan  9 13:45 job.xml
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc 226310747 Jan  9 13:45 EVNT.47898824._000349.pool.root.1
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc    592398 Jan  9 13:45 input.tar.gz
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:45 start_atlas.sh
[2026-01-09 15:11:32] drwxrwx--x 2 boinc boinc      4096 Jan  9 13:45 shared
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:45 boinc_setup_complete
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc      6443 Jan  9 13:45 init_data.xml
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:45 boinc_lockfile
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc      2519 Jan  9 13:45 pandaJob.out
[2026-01-09 15:11:32] -rw------- 1 boinc boinc    989377 Jan  9 13:45 agis_schedconf.cvmfs.json
[2026-01-09 15:11:32] -rw------- 1 boinc boinc   1516240 Jan  9 13:45 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:11:32] drwx------ 5 boinc boinc      4096 Jan  9 13:45 pilot3
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc       529 Jan  9 15:10 boinc_task_state.xml
[2026-01-09 15:11:32] -rw------- 1 boinc boinc 215855927 Jan  9 15:10 HITS.47898826._026160.pool.root.1
[2026-01-09 15:11:32] -rw------- 1 boinc boinc        95 Jan  9 15:10 pilot_heartbeat.json
[2026-01-09 15:11:32] -rw------- 1 boinc boinc      1018 Jan  9 15:10 memory_monitor_summary.json
[2026-01-09 15:11:32] -rw------- 1 boinc boinc    274866 Jan  9 15:10 log.47898826._026160.job.log.tgz.1
[2026-01-09 15:11:32] -rw------- 1 boinc boinc      7750 Jan  9 15:11 heartbeat.json
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc      8192 Jan  9 15:11 boinc_mmap_file
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc        27 Jan  9 15:11 wrapper_checkpoint.txt
[2026-01-09 15:11:32] -rw------- 1 boinc boinc       747 Jan  9 15:11 pilotlog.txt
[2026-01-09 15:11:32] -rw------- 1 boinc boinc    753470 Jan  9 15:11 log.47898826._026160.job.log.1
[2026-01-09 15:11:32] -rw------- 1 boinc boinc       357 Jan  9 15:11 output.list
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc       620 Jan  9 15:11 runtime_log
[2026-01-09 15:11:32] -rw------- 1 boinc boinc   1044480 Jan  9 15:11 result.tar.gz
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc      8902 Jan  9 15:11 runtime_log.err
[2026-01-09 15:11:32] -rw------- 1 boinc boinc       659 Jan  9 15:11 hwnKDm4h6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFQfKDm0QvNOm.diag
[2026-01-09 15:11:32] -rw-r--r-- 1 boinc boinc     11041 Jan  9 15:11 stderr.txt
[2026-01-09 15:11:32] HITS file was successfully produced:
[2026-01-09 15:11:32] -rw------- 1 boinc boinc 215855927 Jan  9 15:10 shared/HITS.pool.root.1
[2026-01-09 15:11:32]  *** Contents of shared directory: ***
[2026-01-09 15:11:32] total 433432
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc 226310747 Jan  9 13:45 ATLAS.root_0
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc    592398 Jan  9 13:45 input.tar.gz
[2026-01-09 15:11:32] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:45 start_atlas.sh
[2026-01-09 15:11:32] -rw------- 1 boinc boinc 215855927 Jan  9 15:10 HITS.pool.root.1
[2026-01-09 15:11:32] -rw------- 1 boinc boinc   1044480 Jan  9 15:11 result.tar.gz
15:11:33 (1339993): run_atlas exited; CPU time 19534.130136
15:11:33 (1339993): called boinc_finish(0)

</stderr_txt>
]]>

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