Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:14 (1312778): wrapper (7.7.26015): starting
12:15:14 (1312778): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 12:15:14] Arguments: --nthreads 4
[2026-01-09 12:15:14] Threads: 4
[2026-01-09 12:15:14] Checking for CVMFS
[2026-01-09 12:15:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:15:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:15:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:15:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:15:14] 2.9.2.0 645782 2229 93208 154941 0 56 32368952 36864001 0 130560 0 1733459 99.990 85498 4807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 12:15:14] CVMFS is ok
[2026-01-09 12:15:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:15:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:15:14] Further information can be found at the LHC@home message board.
[2026-01-09 12:15:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:15:14] Checking for apptainer binary...
[2026-01-09 12:15:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:15:14] Running /usr/bin/apptainer --version
[2026-01-09 12:15:14] apptainer version 1.4.1-1.1
[2026-01-09 12:15:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:15:14] thA315b
[2026-01-09 12:15:14] apptainer works
[2026-01-09 12:15:14] Set ATHENA_PROC_NUMBER=4
[2026-01-09 12:15:14] Set ATHENA_CORE_NUMBER=4
[2026-01-09 12:15:14] Starting ATLAS job with PandaID=6963145986
[2026-01-09 12:15:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:44:47]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:44:47] 2026-01-09 12:44:15,808 | INFO     | --- collectZombieJob: --- 10, [1323138]
[2026-01-09 13:44:47] 2026-01-09 12:44:15,808 | INFO     | zombie collector waiting for pid 1323138
[2026-01-09 13:44:47] 2026-01-09 12:44:15,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:44:47] 2026-01-09 12:44:15,808 | INFO     | collected zombie processes
[2026-01-09 13:44:47] 2026-01-09 12:44:15,808 | INFO     | will attempt to kill all subprocesses of pid=1323138
[2026-01-09 13:44:47] 2026-01-09 12:44:15,854 | INFO     | process IDs to be killed: [1323138] (in reverse order)
[2026-01-09 13:44:47] 2026-01-09 12:44:15,882 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:44:47] 2026-01-09 12:44:15,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:44:47] 2026-01-09 12:44:15,883 | INFO     | did not find any defunct processes belonging to 1323138
[2026-01-09 13:44:47] 2026-01-09 12:44:15,884 | INFO     | did not find any defunct processes belonging to 1323138
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | ready for new job
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | ***************************************
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | ***************************************
[2026-01-09 13:44:47] 2026-01-09 12:44:15,885 | INFO     | 
[2026-01-09 13:44:47] 2026-01-09 12:44:15,886 | INFO     | architecture information:
[2026-01-09 13:44:47] 2026-01-09 12:44:15,886 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:44:47] 2026-01-09 12:44:15,896 | INFO     | cat /etc/os-release:
[2026-01-09 13:44:47] NAME="CentOS Linux"
[2026-01-09 13:44:47] VERSION="7 (Core)"
[2026-01-09 13:44:47] ID="centos"
[2026-01-09 13:44:47] ID_LIKE="rhel fedora"
[2026-01-09 13:44:47] VERSION_ID="7"
[2026-01-09 13:44:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:44:47] ANSI_COLOR="0;31"
[2026-01-09 13:44:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:44:47] HOME_URL="https://www.centos.org/"
[2026-01-09 13:44:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:44:47] 
[2026-01-09 13:44:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:44:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:44:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:44:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:44:47] 
[2026-01-09 13:44:47] 2026-01-09 12:44:15,896 | INFO     | ***************************************
[2026-01-09 13:44:47] 2026-01-09 12:44:16,399 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | INFO     | sufficient remaining disk space (328379400192 B)
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | INFO     | update_server=False
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:44:47] 2026-01-09 12:44:16,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:44:47] 2026-01-09 12:44:16,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:44:47] 2026-01-09 12:44:16,452 | INFO     | all data control threads have been joined
[2026-01-09 13:44:47] 2026-01-09 12:44:16,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:44:47] 2026-01-09 12:44:16,588 | INFO     | aborting loop
[2026-01-09 13:44:47] 2026-01-09 12:44:16,678 | INFO     | all job control threads have been joined
[2026-01-09 13:44:47] 2026-01-09 12:44:17,419 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,419 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,424 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,458 | INFO     | [data] control thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,541 | INFO     | all payload control threads have been joined
[2026-01-09 13:44:47] 2026-01-09 12:44:17,589 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,684 | INFO     | [job] control thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,758 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:17,901 | INFO     | [job] validate thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,013 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,017 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,300 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,420 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,428 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:18,547 | INFO     | [payload] control thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:20,421 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:27,420 | INFO     | job.realtimelogging is not enabled
[2026-01-09 13:44:47] 2026-01-09 12:44:27,967 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:44:47] 2026-01-09 12:44:28,426 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:44:47] 2026-01-09 12:44:30,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918077282112)>', '<ExcThread(monitor, started 139917728401152)>']
[2026-01-09 13:44:47] 2026-01-09 12:44:35,235 | INFO     | all workflow threads have been joined
[2026-01-09 13:44:47] 2026-01-09 12:44:35,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:44:47] 2026-01-09 12:44:35,235 | INFO     | traces error code: 0
[2026-01-09 13:44:47] 2026-01-09 12:44:35,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | INFO     | PID=1316563 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:44:47] 2026-01-09 12:44:47,126 | INFO     | [monitor] control thread has ended
[2026-01-09 13:44:47] 2026-01-09 12:44:47,177 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:44:47] 2026-01-09 12:44:47,180 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:44:47] 2026-01-09 12:44:47,182 [wrapper] pilotpid: 1316563
[2026-01-09 13:44:47] 2026-01-09 12:44:47,185 [wrapper] Pilot exit status: 0
[2026-01-09 13:44:47] 2026-01-09 12:44:47,193 [wrapper] pandaids: 6963145986
[2026-01-09 13:44:47] 2026-01-09 12:44:47,211 [wrapper] cleanup supervisor_pilot 1337253 1316564
[2026-01-09 13:44:47] 2026-01-09 12:44:47,214 [wrapper] Test setup, not cleaning
[2026-01-09 13:44:47] 2026-01-09 12:44:47,216 [wrapper] apfmon messages muted
[2026-01-09 13:44:47] 2026-01-09 12:44:47,219 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:44:47] 2026-01-09 12:44:47,221 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:44:47]  *** Error codes and diagnostics ***
[2026-01-09 13:44:47]     "exeErrorCode": 0,
[2026-01-09 13:44:47]     "exeErrorDiag": "",
[2026-01-09 13:44:47]     "pilotErrorCode": 0,
[2026-01-09 13:44:47]     "pilotErrorDiag": "",
[2026-01-09 13:44:47]  *** Listing of results directory ***
[2026-01-09 13:44:47] total 448328
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 13:44:47] -rwx------ 1 boinc boinc     36322 Jan  8 16:05 runpilot2-wrapper.sh
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:07 queuedata.json
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc       100 Jan  9 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:44:47] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 12:15 run_atlas
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc       105 Jan  9 12:15 job.xml
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc 227910827 Jan  9 12:15 EVNT.47898824._001025.pool.root.1
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc    592397 Jan  9 12:15 input.tar.gz
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:15 start_atlas.sh
[2026-01-09 13:44:47] drwxrwx--x 2 boinc boinc      4096 Jan  9 12:15 shared
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:15 boinc_setup_complete
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc      6443 Jan  9 12:15 init_data.xml
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:15 boinc_lockfile
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc      2519 Jan  9 12:15 pandaJob.out
[2026-01-09 13:44:47] -rw------- 1 boinc boinc    989369 Jan  9 12:15 agis_schedconf.cvmfs.json
[2026-01-09 13:44:47] -rw------- 1 boinc boinc   1516240 Jan  9 12:15 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:44:47] drwx------ 5 boinc boinc      4096 Jan  9 12:15 pilot3
[2026-01-09 13:44:47] -rw------- 1 boinc boinc 225158545 Jan  9 13:43 HITS.47898826._026416.pool.root.1
[2026-01-09 13:44:47] -rw------- 1 boinc boinc        95 Jan  9 13:43 pilot_heartbeat.json
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc       529 Jan  9 13:43 boinc_task_state.xml
[2026-01-09 13:44:47] -rw------- 1 boinc boinc      1014 Jan  9 13:44 memory_monitor_summary.json
[2026-01-09 13:44:47] -rw------- 1 boinc boinc    283133 Jan  9 13:44 log.47898826._026416.job.log.tgz.1
[2026-01-09 13:44:47] -rw------- 1 boinc boinc      7740 Jan  9 13:44 heartbeat.json
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc      8192 Jan  9 13:44 boinc_mmap_file
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc        27 Jan  9 13:44 wrapper_checkpoint.txt
[2026-01-09 13:44:47] -rw------- 1 boinc boinc       747 Jan  9 13:44 pilotlog.txt
[2026-01-09 13:44:47] -rw------- 1 boinc boinc    778219 Jan  9 13:44 log.47898826._026416.job.log.1
[2026-01-09 13:44:47] -rw------- 1 boinc boinc       357 Jan  9 13:44 output.list
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc       620 Jan  9 13:44 runtime_log
[2026-01-09 13:44:47] -rw------- 1 boinc boinc   1075200 Jan  9 13:44 result.tar.gz
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc      8902 Jan  9 13:44 runtime_log.err
[2026-01-09 13:44:47] -rw------- 1 boinc boinc       659 Jan  9 13:44 eElMDmCl6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5kkKDm9KPOon.diag
[2026-01-09 13:44:47] -rw-r--r-- 1 boinc boinc     10707 Jan  9 13:44 stderr.txt
[2026-01-09 13:44:47] HITS file was successfully produced:
[2026-01-09 13:44:47] -rw------- 1 boinc boinc 225158545 Jan  9 13:43 shared/HITS.pool.root.1
[2026-01-09 13:44:47]  *** Contents of shared directory: ***
[2026-01-09 13:44:47] total 444112
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc 227910827 Jan  9 12:15 ATLAS.root_0
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc    592397 Jan  9 12:15 input.tar.gz
[2026-01-09 13:44:47] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:15 start_atlas.sh
[2026-01-09 13:44:47] -rw------- 1 boinc boinc 225158545 Jan  9 13:43 HITS.pool.root.1
[2026-01-09 13:44:47] -rw------- 1 boinc boinc   1075200 Jan  9 13:44 result.tar.gz
13:45:09 (1312778): run_atlas exited; CPU time 20194.395076
13:45:09 (1312778): called boinc_finish(0)

</stderr_txt>
]]>

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