Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:44 (32048): wrapper (7.7.26015): starting
03:57:44 (32048): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 03:57:44] Arguments: --nthreads 12
[2026-01-09 03:57:44] Threads: 12
[2026-01-09 03:57:44] Checking for CVMFS
[2026-01-09 03:57:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:57:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:57:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:57:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:57:45] 2.11.2.0 2987 350785 97544 154937 1 59 16485187 20275201 1 130560 1 147869739 99.949 21533368 15804 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 03:57:45] CVMFS is ok
[2026-01-09 03:57:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:57:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:57:45] Further information can be found at the LHC@home message board.
[2026-01-09 03:57:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:57:45] Checking for apptainer binary...
[2026-01-09 03:57:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:57:45] Running /usr/bin/apptainer --version
[2026-01-09 03:57:45] apptainer version 1.3.2-1.el7
[2026-01-09 03:57:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:57:46] c-205-19.aglt2.org
[2026-01-09 03:57:46] apptainer works
[2026-01-09 03:57:46] Set ATHENA_PROC_NUMBER=12
[2026-01-09 03:57:46] Set ATHENA_CORE_NUMBER=12
[2026-01-09 03:57:46] Starting ATLAS job with PandaID=6963151810
[2026-01-09 03:57:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:39:16]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:39:16]  replicas=None
[2026-01-09 05:39:16]  scope=mc23_13p6TeV
[2026-01-09 05:39:16]  status=None
[2026-01-09 05:39:16]  status_code=0
[2026-01-09 05:39:16]  storage_token=
[2026-01-09 05:39:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963151810/log.47898826._028761.job.log.tgz.1
[2026-01-09 05:39:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/23/log.47898826._028761.job.log.tgz.1
[2026-01-09 05:39:16]  workdir=None
[2026-01-09 05:39:16] ]
[2026-01-09 05:39:16] 2026-01-09 10:38:13,841 | INFO     | transferring file log.47898826._028761.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963151810/log.47898826._028761.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 05:39:16] 2026-01-09 10:38:13,842 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963151810/log.47898826._028761.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._028761.job
[2026-01-09 05:39:16] 2026-01-09 10:38:13,864 | INFO     | adding to output.list: log.47898826._028761.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/23/log.47898826._028761.job.log.tg
[2026-01-09 05:39:16] 2026-01-09 10:38:13,865 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 05:39:16] 2026-01-09 10:38:13,866 | INFO     | summary of transferred files:
[2026-01-09 05:39:16] 2026-01-09 10:38:13,866 | INFO     |  -- lfn=log.47898826._028761.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 05:39:16] 2026-01-09 10:38:13,866 | INFO     | stage-out finished correctly
[2026-01-09 05:39:16] 2026-01-09 10:38:15,241 | WARNING  | process 10162 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 05:39:16] 2026-01-09 10:38:15,242 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963151810/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:39:16] 2026-01-09 10:38:15,330 | INFO     | number of running child processes to parent process 10162: 1
[2026-01-09 05:39:16] 2026-01-09 10:38:15,331 | INFO     | maximum number of monitored processes: 6
[2026-01-09 05:39:16] 2026-01-09 10:38:15,413 | INFO     | time since job start (6013s) is within the limit (349056.0s)
[2026-01-09 05:39:16] 2026-01-09 10:38:16,331 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 05:39:16] 2026-01-09 10:38:17,192 | INFO     | job 6963151810 has state=finished
[2026-01-09 05:39:16] 2026-01-09 10:38:17,192 | INFO     | preparing for final server update for job 6963151810 in state='finished'
[2026-01-09 05:39:16] 2026-01-09 10:38:17,205 | INFO     | this job has now completed (state=finished)
[2026-01-09 05:39:16] 2026-01-09 10:38:17,205 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 05:39:16] 2026-01-09 10:38:17,205 | INFO     | log transfer has been attempted: DONE
[2026-01-09 05:39:16] 2026-01-09 10:38:17,205 | INFO     | job 6963151810 has finished - writing final server update
[2026-01-09 05:39:16] 2026-01-09 10:38:17,205 | INFO     | total number of processed events: 400 (read)
[2026-01-09 05:39:16] 2026-01-09 10:38:17,206 | INFO     | executing command: lscpu
[2026-01-09 05:39:16] 2026-01-09 10:38:17,231 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 05:39:16] 2026-01-09 10:38:17,418 | INFO     | time since job start (6015s) is within the limit (349056.0s)
[2026-01-09 05:39:16] 2026-01-09 10:38:17,833 | INFO     | monitor loop #443: job 0:6963151810 is in state 'finished'
[2026-01-09 05:39:16] 2026-01-09 10:38:17,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:39:16] 2026-01-09 10:38:19,421 | INFO     | time since job start (6017s) is within the limit (349056.0s)
[2026-01-09 05:39:16] 2026-01-09 10:38:20,336 | INFO     | monitor loop #444: job 0:6963151810 is in state 'finished'
[2026-01-09 05:39:16] 2026-01-09 10:38:20,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,427 | INFO     | time since job start (6019s) is within the limit (349056.0s)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,864 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 05:39:16] 2026-01-09 10:38:21,867 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-09 05:39:16] 2026-01-09 10:38:21,870 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963151810/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,871 | INFO     | extracted standard info from prmon json
[2026-01-09 05:39:16] 2026-01-09 10:38:21,871 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:39:16] 2026-01-09 10:38:21,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:39:16] 2026-01-09 10:38:21,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:39:16] 2026-01-09 10:38:21,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:39:16] 2026-01-09 10:38:21,875 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:39:16] 2026-01-09 10:38:21,875 | INFO     | sum of square deviations: 241429643.0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,876 | INFO     | sum of deviations: -1862392829.999999
[2026-01-09 05:39:16] 2026-01-09 10:38:21,876 | INFO     | mean x: 1767952191.5
[2026-01-09 05:39:16] 2026-01-09 10:38:21,876 | INFO     | mean y: 2694728.8695652173
[2026-01-09 05:39:16] 2026-01-09 10:38:21,876 | INFO     | intersect: 13640711354.824587
[2026-01-09 05:39:16] 2026-01-09 10:38:21,876 | INFO     | chi2: 0.09472882272473514
[2026-01-09 05:39:16] 2026-01-09 10:38:21,877 | INFO     | current memory leak: -7.71 B/s (using 92 data points, chi2=0.09)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,877 | INFO     | could have reported an average CPU frequency of 2120 MHz (7 samples)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,877 | INFO     | ..............................
[2026-01-09 05:39:16] 2026-01-09 10:38:21,877 | INFO     | . Timing measurements:
[2026-01-09 05:39:16] 2026-01-09 10:38:21,877 | INFO     | . get job = 0 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . initial setup = 2 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . payload setup = 7 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . stage-in = 0 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . payload execution = 5984 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . stage-out = 0 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | . log creation = 0 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,878 | INFO     | ..............................
[2026-01-09 05:39:16] 2026-01-09 10:38:21,961 | INFO     | 
[2026-01-09 05:39:16] 2026-01-09 10:38:21,961 | INFO     | job summary report
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | --------------------------------------------------
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | PanDA job id: 6963151810
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | task id: 47898826
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | errors: (none)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:39:16] 2026-01-09 10:38:21,962 | INFO     | pilot state: finished 
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | transexitcode: 0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | exeerrorcode: 0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | exeerrordiag: 
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | exitcode: 0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | exitmsg: OK
[2026-01-09 05:39:16] 2026-01-09 10:38:21,963 | INFO     | cpuconsumptiontime: 65251 s
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | nevents: 400
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | neventsw: 0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | pid: 10162
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | pgrp: 10162
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | corecount: 12
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | event service: False
[2026-01-09 05:39:16] 2026-01-09 10:38:21,964 | INFO     | sizes: {0: 2283142, 1: 2283998, 6: 2284260, 12: 2284288, 5994: 2311012, 5995: 2320010, 5998: 2320194, 6003: 2320388}
[2026-01-09 05:39:16] 2026-01-09 10:38:21,965 | INFO     | --------------------------------------------------
[2026-01-09 05:39:16] 2026-01-09 10:38:21,965 | INFO     | 
[2026-01-09 05:39:16] 2026-01-09 10:38:21,965 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 05:39:16] 2026-01-09 10:38:21,986 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,986 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,987 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,987 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,990 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:39:16] 2026-01-09 10:38:21,990 | INFO     | job 6963151810 has completed (purged errors)
[2026-01-09 05:39:16] 2026-01-09 10:38:21,990 | INFO     | overall cleanup function is called
[2026-01-09 05:39:16] 2026-01-09 10:38:22,998 | INFO     | --- collectZombieJob: --- 10, [10162]
[2026-01-09 05:39:16] 2026-01-09 10:38:22,998 | INFO     | zombie collector waiting for pid 10162
[2026-01-09 05:39:16] 2026-01-09 10:38:22,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:39:16] 2026-01-09 10:38:22,998 | INFO     | collected zombie processes
[2026-01-09 05:39:16] 2026-01-09 10:38:22,999 | INFO     | will attempt to kill all subprocesses of pid=10162
[2026-01-09 05:39:16] 2026-01-09 10:38:23,093 | INFO     | process IDs to be killed: [10162] (in reverse order)
[2026-01-09 05:39:16] 2026-01-09 10:38:23,150 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:39:16] 2026-01-09 10:38:23,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:39:16] 2026-01-09 10:38:23,152 | INFO     | did not find any defunct processes belonging to 10162
[2026-01-09 05:39:16] 2026-01-09 10:38:23,154 | INFO     | did not find any defunct processes belonging to 10162
[2026-01-09 05:39:16] 2026-01-09 10:38:23,155 | INFO     | ready for new job
[2026-01-09 05:39:16] 2026-01-09 10:38:23,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:39:16] 2026-01-09 10:38:23,156 | INFO     | ***************************************
[2026-01-09 05:39:16] 2026-01-09 10:38:23,156 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:39:16] 2026-01-09 10:38:23,156 | INFO     | ***************************************
[2026-01-09 05:39:16] 2026-01-09 10:38:23,156 | INFO     | 
[2026-01-09 05:39:16] 2026-01-09 10:38:23,157 | INFO     | architecture information:
[2026-01-09 05:39:16] 2026-01-09 10:38:23,157 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:39:16] 2026-01-09 10:38:23,172 | INFO     | cat /etc/os-release:
[2026-01-09 05:39:16] NAME="CentOS Linux"
[2026-01-09 05:39:16] VERSION="7 (Core)"
[2026-01-09 05:39:16] ID="centos"
[2026-01-09 05:39:16] ID_LIKE="rhel fedora"
[2026-01-09 05:39:16] VERSION_ID="7"
[2026-01-09 05:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:39:16] ANSI_COLOR="0;31"
[2026-01-09 05:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:39:16] HOME_URL="https://www.centos.org/"
[2026-01-09 05:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:39:16] 
[2026-01-09 05:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:39:16] 
[2026-01-09 05:39:16] 2026-01-09 10:38:23,172 | INFO     | ***************************************
[2026-01-09 05:39:16] 2026-01-09 10:38:23,675 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 05:39:16] 2026-01-09 10:38:23,692 | INFO     | sufficient remaining disk space (29311893504 B)
[2026-01-09 05:39:16] 2026-01-09 10:38:23,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:39:16] 2026-01-09 10:38:23,693 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:39:16] 2026-01-09 10:38:23,693 | INFO     | update_server=False
[2026-01-09 05:39:16] 2026-01-09 10:38:23,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:39:16] 2026-01-09 10:38:23,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:39:16] 2026-01-09 10:38:23,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:39:16] 2026-01-09 10:38:23,844 | INFO     | aborting loop
[2026-01-09 05:39:16] 2026-01-09 10:38:24,382 | INFO     | all data control threads have been joined
[2026-01-09 05:39:16] 2026-01-09 10:38:24,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:39:16] 2026-01-09 10:38:24,651 | INFO     | all payload control threads have been joined
[2026-01-09 05:39:16] 2026-01-09 10:38:24,699 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:24,699 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:24,746 | INFO     | all job control threads have been joined
[2026-01-09 05:39:16] 2026-01-09 10:38:24,849 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,061 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,297 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,387 | INFO     | [data] control thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,544 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,656 | INFO     | [payload] control thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,689 | INFO     | [job] validate thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:25,751 | INFO     | [job] control thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:26,021 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:26,181 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:26,182 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:26,470 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:26,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:39:16] 2026-01-09 10:38:30,931 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:33,848 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:39:16] 2026-01-09 10:38:34,853 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:39:16] 2026-01-09 10:38:54,615 | INFO     | PID=3740 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 05:39:16] 2026-01-09 10:38:54,615 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:39:16] 2026-01-09 10:38:54,615 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:39:16] 2026-01-09 10:38:54,615 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:39:16] 2026-01-09 10:39:11,086 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:39:16] 2026-01-09 10:39:11,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470758381376)>', '<ExcThread(monitor, started 140470051137280)>']
[2026-01-09 05:39:16] 2026-01-09 10:39:11,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:39:16] 2026-01-09 10:39:11,701 | INFO     | [monitor] control thread has ended
[2026-01-09 05:39:16] 2026-01-09 10:39:16,263 | INFO     | all workflow threads have been joined
[2026-01-09 05:39:16] 2026-01-09 10:39:16,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:39:16] 2026-01-09 10:39:16,274 | INFO     | traces error code: 0
[2026-01-09 05:39:16] 2026-01-09 10:39:16,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:39:16] 2026-01-09 10:39:16,362 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:39:16] 2026-01-09 10:39:16,366 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:39:16] 2026-01-09 10:39:16,370 [wrapper] pilotpid: 3740
[2026-01-09 05:39:16] 2026-01-09 10:39:16,374 [wrapper] Pilot exit status: 0
[2026-01-09 05:39:16] 2026-01-09 10:39:16,388 [wrapper] pandaids: 6963151810
[2026-01-09 05:39:16] 2026-01-09 10:39:16,429 [wrapper] cleanup supervisor_pilot  9374 3741
[2026-01-09 05:39:16] 2026-01-09 10:39:16,433 [wrapper] Test setup, not cleaning
[2026-01-09 05:39:16] 2026-01-09 10:39:16,437 [wrapper] apfmon messages muted
[2026-01-09 05:39:16] 2026-01-09 10:39:16,441 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:39:16] 2026-01-09 10:39:16,444 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:39:16]  *** Error codes and diagnostics ***
[2026-01-09 05:39:16]     "exeErrorCode": 0,
[2026-01-09 05:39:16]     "exeErrorDiag": "",
[2026-01-09 05:39:16]     "pilotErrorCode": 0,
[2026-01-09 05:39:16]     "pilotErrorDiag": "",
[2026-01-09 05:39:16]  *** Listing of results directory ***
[2026-01-09 05:39:16] total 440764
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 05:39:16] -rwx------ 1 boincer umatlas     36322 Jan  8 11:03 runpilot2-wrapper.sh
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas       100 Jan  9 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:39:16] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 03:57 run_atlas
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas       105 Jan  9 03:57 job.xml
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas 226275280 Jan  9 03:57 EVNT.47898824._001126.pool.root.1
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:57 start_atlas.sh
[2026-01-09 05:39:16] drwxrwx--x 2 boincer umatlas      4096 Jan  9 03:57 shared
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 03:57 input.tar.gz
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas         0 Jan  9 03:57 boinc_lockfile
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 03:57 pandaJob.out
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas        57 Jan  9 03:57 setup.sh.local
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas    989759 Jan  9 03:57 agis_schedconf.cvmfs.json
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas   1516240 Jan  9 03:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:39:16] drwx------ 5 boincer umatlas      4096 Jan  9 03:58 pilot3
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas 218625662 Jan  9 05:37 HITS.47898826._028761.pool.root.1
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas       529 Jan  9 05:38 boinc_task_state.xml
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas      1047 Jan  9 05:38 memory_monitor_summary.json
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas    407732 Jan  9 05:38 log.47898826._028761.job.log.tgz.1
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas      7849 Jan  9 05:38 heartbeat.json
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas        95 Jan  9 05:38 pilot_heartbeat.json
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 05:38 init_data.xml
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 05:39 boinc_mmap_file
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas        27 Jan  9 05:39 wrapper_checkpoint.txt
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas      4817 Jan  9 05:39 pilotlog.txt
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas    853313 Jan  9 05:39 log.47898826._028761.job.log.1
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas       357 Jan  9 05:39 output.list
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas       620 Jan  9 05:39 runtime_log
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas   1280000 Jan  9 05:39 result.tar.gz
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas       659 Jan  9 05:39 t9sKDmTf7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSwkKDmS88hXn.diag
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 05:39 runtime_log.err
[2026-01-09 05:39:16] -rw-r--r-- 1 boincer umatlas     21896 Jan  9 05:39 stderr.txt
[2026-01-09 05:39:16] HITS file was successfully produced:
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas 218625662 Jan  9 05:37 shared/HITS.pool.root.1
[2026-01-09 05:39:16]  *** Contents of shared directory: ***
[2026-01-09 05:39:16] total 436332
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas 226275280 Jan  9 03:57 ATLAS.root_0
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:57 start_atlas.sh
[2026-01-09 05:39:16] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 03:57 input.tar.gz
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas 218625662 Jan  9 05:37 HITS.pool.root.1
[2026-01-09 05:39:16] -rw------- 1 boincer umatlas   1280000 Jan  9 05:39 result.tar.gz
05:39:17 (32048): run_atlas exited; CPU time 65235.033908
05:39:17 (32048): called boinc_finish(0)

</stderr_txt>
]]>

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