Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:21:23 (1514): wrapper (7.7.26015): starting
04:21:23 (1514): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 04:21:23] Arguments: --nthreads 8
[2026-01-09 04:21:23] Threads: 8
[2026-01-09 04:21:23] Checking for CVMFS
[2026-01-09 04:21:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:21:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:21:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:21:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:21:24] 2.11.2.0 2893 128887 82440 154938 2 56 12418015 20275200 1 130560 0 32121820 99.809 8487980 33358 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 04:21:24] CVMFS is ok
[2026-01-09 04:21:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:21:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:21:24] Further information can be found at the LHC@home message board.
[2026-01-09 04:21:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:21:24] Checking for apptainer binary...
[2026-01-09 04:21:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:21:24] Running /usr/bin/apptainer --version
[2026-01-09 04:21:24] apptainer version 1.3.2-1.el7
[2026-01-09 04:21:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:21:25] c-204-22.aglt2.org
[2026-01-09 04:21:25] apptainer works
[2026-01-09 04:21:25] Set ATHENA_PROC_NUMBER=8
[2026-01-09 04:21:25] Set ATHENA_CORE_NUMBER=8
[2026-01-09 04:21:25] Starting ATLAS job with PandaID=6963146126
[2026-01-09 04:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:18:10]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:18:10] 2026-01-09 12:17:38,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:18:10] 2026-01-09 12:17:38,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:18:10] 2026-01-09 12:17:38,146 | INFO     | fitting pss+swap vs Time
[2026-01-09 07:18:10] 2026-01-09 12:17:38,147 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,148 | INFO     | sum of deviations: -26733611791.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,148 | INFO     | mean x: 1767955780.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,148 | INFO     | mean y: 2539017.0462427745
[2026-01-09 07:18:10] 2026-01-09 12:17:38,148 | INFO     | intersect: 29441793866.635838
[2026-01-09 07:18:10] 2026-01-09 12:17:38,149 | INFO     | chi2: 2.42811521263998
[2026-01-09 07:18:10] 2026-01-09 12:17:38,149 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,150 | INFO     | sum of deviations: -14050561270.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,150 | INFO     | mean x: 1767955627.5
[2026-01-09 07:18:10] 2026-01-09 12:17:38,151 | INFO     | mean y: 2553019.2976190476
[2026-01-09 07:18:10] 2026-01-09 12:17:38,151 | INFO     | intersect: 16898173767.119
[2026-01-09 07:18:10] 2026-01-09 12:17:38,151 | INFO     | chi2: 1.664268304753485
[2026-01-09 07:18:10] 2026-01-09 12:17:38,151 | INFO     | current chi2=1.664268304753485 (change=31.458429316292563 %)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,152 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,153 | INFO     | sum of deviations: -13009265833.000002
[2026-01-09 07:18:10] 2026-01-09 12:17:38,153 | INFO     | mean x: 1767955475.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,153 | INFO     | mean y: 2554266.042944785
[2026-01-09 07:18:10] 2026-01-09 12:17:38,153 | INFO     | intersect: 17130261093.163279
[2026-01-09 07:18:10] 2026-01-09 12:17:38,153 | INFO     | chi2: 1.6637213581161243
[2026-01-09 07:18:10] 2026-01-09 12:17:38,154 | INFO     | current chi2=1.6637213581161243 (change=0.032864090231032296 %)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,154 | INFO     | right removable region: 162
[2026-01-09 07:18:10] 2026-01-09 12:17:38,154 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,155 | INFO     | sum of deviations: -52593218754.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,155 | INFO     | sufficient remaining disk space (18490589184 B)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,156 | INFO     | mean x: 1767955932.5
[2026-01-09 07:18:10] 2026-01-09 12:17:38,156 | INFO     | mean y: 2567790.369047619
[2026-01-09 07:18:10] 2026-01-09 12:17:38,156 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,156 | INFO     | intersect: 63245253558.98825
[2026-01-09 07:18:10] 2026-01-09 12:17:38,157 | INFO     | chi2: 0.9905410310668658
[2026-01-09 07:18:10] 2026-01-09 12:17:38,157 | INFO     | current chi2=0.9905410310668658 (change=59.20535294575683 %)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,157 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,158 | INFO     | sum of deviations: -53496457405.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,158 | INFO     | mean x: 1767956085.0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,158 | INFO     | mean y: 2568807.6687116562
[2026-01-09 07:18:10] 2026-01-09 12:17:38,159 | INFO     | intersect: 70434825833.31216
[2026-01-09 07:18:10] 2026-01-09 12:17:38,159 | INFO     | chi2: 0.9520465855602444
[2026-01-09 07:18:10] 2026-01-09 12:17:38,159 | INFO     | current chi2=0.9520465855602444 (change=3.886204033886493 %)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,159 | INFO     | left removable region: 20
[2026-01-09 07:18:10] 2026-01-09 12:17:38,159 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 07:18:10] 2026-01-09 12:17:38,160 | INFO     | sum of deviations: -30948892442.5
[2026-01-09 07:18:10] 2026-01-09 12:17:38,160 | INFO     | mean x: 1767956054.5
[2026-01-09 07:18:10] 2026-01-09 12:17:38,160 | INFO     | mean y: 2575679.8098591547
[2026-01-09 07:18:10] 2026-01-09 12:17:38,161 | INFO     | intersect: 61632929199.09797
[2026-01-09 07:18:10] 2026-01-09 12:17:38,161 | INFO     | chi2: 0.14851872470899422
[2026-01-09 07:18:10] 2026-01-09 12:17:38,161 | INFO     | current memory leak: -34.86 B/s (using 142 data points, chi2=0.15)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | could have reported an average CPU frequency of 2019 MHz (9 samples)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | ..............................
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | . Timing measurements:
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | . get job = 0 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | . initial setup = 2 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,162 | INFO     | . payload setup = 8 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,163 | INFO     | . stage-in = 0 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,163 | INFO     | . payload execution = 10518 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,163 | INFO     | . stage-out = 0 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,163 | INFO     | . log creation = 0 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,163 | INFO     | ..............................
[2026-01-09 07:18:10] 2026-01-09 12:17:38,256 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6963146126: 3556511 B (within 4404019200 B limit)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,256 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6963146126/HITS.47898826._026556.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,256 | INFO     | total size of present files: 0 B (workdir size: 3556511 B)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,256 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6963146126/HITS.47898826._026556.pool.root.1 since it does not exist
[2026-01-09 07:18:10] 2026-01-09 12:17:38,343 | INFO     | number of running child processes to parent process 11946: 1
[2026-01-09 07:18:10] 2026-01-09 12:17:38,343 | INFO     | maximum number of monitored processes: 6
[2026-01-09 07:18:10] 2026-01-09 12:17:38,344 | INFO     | aborting job monitoring since job object (job id=6963146126) has expired
[2026-01-09 07:18:10] 2026-01-09 12:17:38,557 | INFO     | 
[2026-01-09 07:18:10] 2026-01-09 12:17:38,557 | INFO     | job summary report
[2026-01-09 07:18:10] 2026-01-09 12:17:38,557 | INFO     | --------------------------------------------------
[2026-01-09 07:18:10] 2026-01-09 12:17:38,558 | INFO     | PanDA job id: 6963146126
[2026-01-09 07:18:10] 2026-01-09 12:17:38,558 | INFO     | task id: 47898826
[2026-01-09 07:18:10] 2026-01-09 12:17:38,558 | INFO     | errors: (none)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,558 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:18:10] 2026-01-09 12:17:38,558 | INFO     | pilot state: finished 
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | transexitcode: 0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | exeerrorcode: 0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | exeerrordiag: 
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | exitcode: 0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | exitmsg: OK
[2026-01-09 07:18:10] 2026-01-09 12:17:38,559 | INFO     | cpuconsumptiontime: 79533 s
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | nevents: 400
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | neventsw: 0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | pid: 11946
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | pgrp: 11946
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | corecount: 8
[2026-01-09 07:18:10] 2026-01-09 12:17:38,560 | INFO     | event service: False
[2026-01-09 07:18:10] 2026-01-09 12:17:38,561 | INFO     | sizes: {0: 2283855, 1: 2283997, 6: 2284259, 11: 2284287, 10529: 2313175, 10530: 2322173, 10531: 2322357, 10538: 2322615}
[2026-01-09 07:18:10] 2026-01-09 12:17:38,561 | INFO     | --------------------------------------------------
[2026-01-09 07:18:10] 2026-01-09 12:17:38,561 | INFO     | 
[2026-01-09 07:18:10] 2026-01-09 12:17:38,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 07:18:10] 2026-01-09 12:17:38,588 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,589 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,589 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,589 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,592 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,592 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:18:10] 2026-01-09 12:17:38,593 | INFO     | job 6963146126 has completed (purged errors)
[2026-01-09 07:18:10] 2026-01-09 12:17:38,593 | INFO     | overall cleanup function is called
[2026-01-09 07:18:10] 2026-01-09 12:17:39,596 | INFO     | --- collectZombieJob: --- 10, [11946]
[2026-01-09 07:18:10] 2026-01-09 12:17:39,596 | INFO     | zombie collector waiting for pid 11946
[2026-01-09 07:18:10] 2026-01-09 12:17:39,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:18:10] 2026-01-09 12:17:39,596 | INFO     | collected zombie processes
[2026-01-09 07:18:10] 2026-01-09 12:17:39,597 | INFO     | will attempt to kill all subprocesses of pid=11946
[2026-01-09 07:18:10] 2026-01-09 12:17:39,693 | INFO     | process IDs to be killed: [11946] (in reverse order)
[2026-01-09 07:18:10] 2026-01-09 12:17:39,750 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:18:10] 2026-01-09 12:17:39,751 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:18:10] 2026-01-09 12:17:39,755 | INFO     | did not find any defunct processes belonging to 11946
[2026-01-09 07:18:10] 2026-01-09 12:17:39,757 | INFO     | did not find any defunct processes belonging to 11946
[2026-01-09 07:18:10] 2026-01-09 12:17:39,758 | INFO     | ready for new job
[2026-01-09 07:18:10] 2026-01-09 12:17:39,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:18:10] 2026-01-09 12:17:39,760 | INFO     | ***************************************
[2026-01-09 07:18:10] 2026-01-09 12:17:39,760 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:18:10] 2026-01-09 12:17:39,760 | INFO     | ***************************************
[2026-01-09 07:18:10] 2026-01-09 12:17:39,761 | INFO     | 
[2026-01-09 07:18:10] 2026-01-09 12:17:39,761 | INFO     | architecture information:
[2026-01-09 07:18:10] 2026-01-09 12:17:39,762 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:18:10] 2026-01-09 12:17:39,780 | INFO     | cat /etc/os-release:
[2026-01-09 07:18:10] NAME="CentOS Linux"
[2026-01-09 07:18:10] VERSION="7 (Core)"
[2026-01-09 07:18:10] ID="centos"
[2026-01-09 07:18:10] ID_LIKE="rhel fedora"
[2026-01-09 07:18:10] VERSION_ID="7"
[2026-01-09 07:18:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:18:10] ANSI_COLOR="0;31"
[2026-01-09 07:18:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:18:10] HOME_URL="https://www.centos.org/"
[2026-01-09 07:18:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:18:10] 
[2026-01-09 07:18:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:18:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:18:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:18:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:18:10] 
[2026-01-09 07:18:10] 2026-01-09 12:17:39,780 | INFO     | ***************************************
[2026-01-09 07:18:10] 2026-01-09 12:17:40,284 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 07:18:10] 2026-01-09 12:17:40,303 | INFO     | sufficient remaining disk space (18495832064 B)
[2026-01-09 07:18:10] 2026-01-09 12:17:40,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:18:10] 2026-01-09 12:17:40,304 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:18:10] 2026-01-09 12:17:40,304 | INFO     | update_server=False
[2026-01-09 07:18:10] 2026-01-09 12:17:40,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:18:10] 2026-01-09 12:17:40,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:18:10] 2026-01-09 12:17:40,305 | INFO     | aborting loop
[2026-01-09 07:18:10] 2026-01-09 12:17:40,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:18:10] 2026-01-09 12:17:40,931 | INFO     | all job control threads have been joined
[2026-01-09 07:18:10] 2026-01-09 12:17:40,970 | INFO     | all payload control threads have been joined
[2026-01-09 07:18:10] 2026-01-09 12:17:41,169 | INFO     | all data control threads have been joined
[2026-01-09 07:18:10] 2026-01-09 12:17:41,306 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,310 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:18:10] 2026-01-09 12:17:41,523 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,554 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,634 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,821 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,835 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,936 | INFO     | [job] control thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:41,974 | INFO     | [payload] control thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:42,039 | INFO     | [job] validate thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:42,174 | INFO     | [data] control thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:42,203 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:42,247 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:42,860 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:43,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:18:10] 2026-01-09 12:17:44,272 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:45,470 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:18:10] 2026-01-09 12:17:59,336 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:18:10] 2026-01-09 12:17:59,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471069431616)>', '<ExcThread(monitor, started 140470042744576)>']
[2026-01-09 07:18:10] 2026-01-09 12:18:04,523 | INFO     | all workflow threads have been joined
[2026-01-09 07:18:10] 2026-01-09 12:18:04,523 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:18:10] 2026-01-09 12:18:04,524 | INFO     | traces error code: 0
[2026-01-09 07:18:10] 2026-01-09 12:18:04,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:18:10] 2026-01-09 12:18:10,463 | INFO     | PID=5354 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 07:18:10] 2026-01-09 12:18:10,463 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:18:10] 2026-01-09 12:18:10,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:18:10] 2026-01-09 12:18:10,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:18:10] 2026-01-09 12:18:10,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:18:10] 2026-01-09 12:18:10,464 | INFO     | [monitor] control thread has ended
[2026-01-09 07:18:10] 2026-01-09 12:18:10,590 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:18:10] 2026-01-09 12:18:10,595 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:18:10] 2026-01-09 12:18:10,599 [wrapper] pilotpid: 5354
[2026-01-09 07:18:10] 2026-01-09 12:18:10,604 [wrapper] Pilot exit status: 0
[2026-01-09 07:18:10] 2026-01-09 12:18:10,621 [wrapper] pandaids: 6963146126
[2026-01-09 07:18:10] 2026-01-09 12:18:10,665 [wrapper] cleanup supervisor_pilot 19820 5355
[2026-01-09 07:18:10] 2026-01-09 12:18:10,670 [wrapper] Test setup, not cleaning
[2026-01-09 07:18:10] 2026-01-09 12:18:10,675 [wrapper] apfmon messages muted
[2026-01-09 07:18:10] 2026-01-09 12:18:10,680 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:18:10] 2026-01-09 12:18:10,685 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:18:10]  *** Error codes and diagnostics ***
[2026-01-09 07:18:10]     "exeErrorCode": 0,
[2026-01-09 07:18:10]     "exeErrorDiag": "",
[2026-01-09 07:18:10]     "pilotErrorCode": 0,
[2026-01-09 07:18:10]     "pilotErrorDiag": "",
[2026-01-09 07:18:10]  *** Listing of results directory ***
[2026-01-09 07:18:10] total 447268
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 07:18:10] -rwx------ 1 boincer umatlas     36322 Jan  8 10:05 runpilot2-wrapper.sh
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 10:07 queuedata.json
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas       100 Jan  9 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:18:10] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 04:21 run_atlas
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas       105 Jan  9 04:21 job.xml
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas 226660702 Jan  9 04:21 EVNT.47898824._001047.pool.root.1
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:21 start_atlas.sh
[2026-01-09 07:18:10] drwxrwx--x 2 boincer umatlas      4096 Jan  9 04:21 shared
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 04:21 input.tar.gz
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas         0 Jan  9 04:21 boinc_lockfile
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 04:21 pandaJob.out
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas        57 Jan  9 04:21 setup.sh.local
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas    989751 Jan  9 04:21 agis_schedconf.cvmfs.json
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas   1516240 Jan  9 04:21 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:18:10] drwx------ 5 boincer umatlas      4096 Jan  9 04:21 pilot3
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas      5910 Jan  9 07:10 init_data.xml
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas 223681591 Jan  9 07:16 HITS.47898826._026556.pool.root.1
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas       530 Jan  9 07:17 boinc_task_state.xml
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas        95 Jan  9 07:17 pilot_heartbeat.json
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas      1050 Jan  9 07:17 memory_monitor_summary.json
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas    406586 Jan  9 07:17 log.47898826._026556.job.log.tgz.1
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas      7850 Jan  9 07:17 heartbeat.json
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 07:18 boinc_mmap_file
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas        28 Jan  9 07:18 wrapper_checkpoint.txt
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas       744 Jan  9 07:18 pilotlog.txt
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas   1463559 Jan  9 07:18 log.47898826._026556.job.log.1
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas       357 Jan  9 07:18 output.list
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas       620 Jan  9 07:18 runtime_log
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas   1894400 Jan  9 07:18 result.tar.gz
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 07:18 runtime_log.err
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas       662 Jan  9 07:18 C8OKDmNl6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4YfKDmVRiX9n.diag
[2026-01-09 07:18:10] -rw-r--r-- 1 boincer umatlas     21323 Jan  9 07:18 stderr.txt
[2026-01-09 07:18:10] HITS file was successfully produced:
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas 223681591 Jan  9 07:16 shared/HITS.pool.root.1
[2026-01-09 07:18:10]  *** Contents of shared directory: ***
[2026-01-09 07:18:10] total 442244
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas 226660702 Jan  9 04:21 ATLAS.root_0
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 04:21 start_atlas.sh
[2026-01-09 07:18:10] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 04:21 input.tar.gz
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas 223681591 Jan  9 07:16 HITS.pool.root.1
[2026-01-09 07:18:10] -rw------- 1 boincer umatlas   1894400 Jan  9 07:18 result.tar.gz
07:18:12 (1514): run_atlas exited; CPU time 79475.659698
07:18:12 (1514): called boinc_finish(0)

</stderr_txt>
]]>

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