Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:03 (7818): wrapper (7.7.26015): starting
03:57:03 (7818): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 03:57:03] Arguments: --nthreads 8
[2026-01-09 03:57:03] Threads: 8
[2026-01-09 03:57:03] Checking for CVMFS
[2026-01-09 03:57:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:57:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:57:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:57:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:57:04] 2.11.2.0 2776 106227 89900 154937 0 59 17062651 20275200 1 130560 0 21945452 99.793 6621504 31565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 03:57:04] CVMFS is ok
[2026-01-09 03:57:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:57:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:57:04] Further information can be found at the LHC@home message board.
[2026-01-09 03:57:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:57:04] Checking for apptainer binary...
[2026-01-09 03:57:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:57:04] Running /usr/bin/apptainer --version
[2026-01-09 03:57:04] apptainer version 1.3.2-1.el7
[2026-01-09 03:57:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:57:05] c-115-7.aglt2.org
[2026-01-09 03:57:05] apptainer works
[2026-01-09 03:57:05] Set ATHENA_PROC_NUMBER=8
[2026-01-09 03:57:05] Set ATHENA_CORE_NUMBER=8
[2026-01-09 03:57:05] Starting ATLAS job with PandaID=6963145098
[2026-01-09 03:57:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:39:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:39:05] 2026-01-09 11:38:27,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:39:05] 2026-01-09 11:38:29,494 | INFO     | time since job start (9667s) is within the limit (349056.0s)
[2026-01-09 06:39:05] 2026-01-09 11:38:30,071 | INFO     | monitor loop #712: job 0:6963145098 is in state 'finished'
[2026-01-09 06:39:05] 2026-01-09 11:38:30,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:39:05] 2026-01-09 11:38:31,497 | INFO     | time since job start (9669s) is within the limit (349056.0s)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,574 | INFO     | monitor loop #713: job 0:6963145098 is in state 'finished'
[2026-01-09 06:39:05] 2026-01-09 11:38:32,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,745 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 06:39:05] 2026-01-09 11:38:32,749 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2026-01-09 06:39:05] 2026-01-09 11:38:32,750 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963145098/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,751 | INFO     | extracted standard info from prmon json
[2026-01-09 06:39:05] 2026-01-09 11:38:32,751 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 06:39:05] 2026-01-09 11:38:32,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 06:39:05] 2026-01-09 11:38:32,751 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 06:39:05] 2026-01-09 11:38:32,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 06:39:05] 2026-01-09 11:38:32,755 | INFO     | fitting pss+swap vs Time
[2026-01-09 06:39:05] 2026-01-09 11:38:32,755 | INFO     | sum of square deviations: 1223016419.5
[2026-01-09 06:39:05] 2026-01-09 11:38:32,756 | INFO     | sum of deviations: 15010040640.000002
[2026-01-09 06:39:05] 2026-01-09 11:38:32,756 | INFO     | mean x: 1767953861.5
[2026-01-09 06:39:05] 2026-01-09 11:38:32,756 | INFO     | mean y: 2504177.3924050634
[2026-01-09 06:39:05] 2026-01-09 11:38:32,756 | INFO     | intersect: -21695535920.55571
[2026-01-09 06:39:05] 2026-01-09 11:38:32,757 | INFO     | chi2: 1.5675091443952842
[2026-01-09 06:39:05] 2026-01-09 11:38:32,757 | INFO     | sum of square deviations: 1110539892.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | sum of deviations: 14353946843.99998
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | mean x: 1767953709.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | mean y: 2503287.725490196
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | intersect: -22848646629.93871
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | chi2: 1.5691082879945133
[2026-01-09 06:39:05] 2026-01-09 11:38:32,758 | INFO     | current chi2=1.5691082879945133 (change=-0.10201813526555216 %)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,759 | INFO     | right removable region: 152
[2026-01-09 06:39:05] 2026-01-09 11:38:32,759 | INFO     | sum of square deviations: 1110539892.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | sum of deviations: -8727824062.999998
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | mean x: 1767954014.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | mean y: 2535880.0392156863
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | intersect: 13897031428.39601
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | chi2: 0.10075371370651107
[2026-01-09 06:39:05] 2026-01-09 11:38:32,760 | INFO     | current chi2=0.10075371370651107 (change=93.57236836118236 %)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,761 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,761 | INFO     | sum of deviations: -8513726049.499998
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | mean x: 1767954166.5
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | mean y: 2535493.141891892
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | intersect: 14976849328.400345
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | chi2: 0.084995778253791
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | current chi2=0.084995778253791 (change=15.64005422035549 %)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,762 | INFO     | left removable region: 20
[2026-01-09 06:39:05] 2026-01-09 11:38:32,763 | INFO     | sum of square deviations: 713140813.0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,763 | INFO     | sum of deviations: 1979410990.5
[2026-01-09 06:39:05] 2026-01-09 11:38:32,763 | INFO     | mean x: 1767954288.5
[2026-01-09 06:39:05] 2026-01-09 11:38:32,763 | INFO     | mean y: 2517458.0833333335
[2026-01-09 06:39:05] 2026-01-09 11:38:32,764 | INFO     | intersect: -4904659477.474424
[2026-01-09 06:39:05] 2026-01-09 11:38:32,764 | INFO     | chi2: 0.0002687404242081278
[2026-01-09 06:39:05] 2026-01-09 11:38:32,764 | INFO     | current memory leak: 2.78 B/s (using 132 data points, chi2=0.00)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,764 | INFO     | could have reported an average CPU frequency of 2193 MHz (9 samples)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | ..............................
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . Timing measurements:
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . get job = 0 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . initial setup = 2 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . payload setup = 8 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . stage-in = 0 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . payload execution = 9631 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . stage-out = 0 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,765 | INFO     | . log creation = 0 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,766 | INFO     | ..............................
[2026-01-09 06:39:05] 2026-01-09 11:38:32,852 | INFO     | 
[2026-01-09 06:39:05] 2026-01-09 11:38:32,852 | INFO     | job summary report
[2026-01-09 06:39:05] 2026-01-09 11:38:32,852 | INFO     | --------------------------------------------------
[2026-01-09 06:39:05] 2026-01-09 11:38:32,853 | INFO     | PanDA job id: 6963145098
[2026-01-09 06:39:05] 2026-01-09 11:38:32,853 | INFO     | task id: 47898826
[2026-01-09 06:39:05] 2026-01-09 11:38:32,853 | INFO     | errors: (none)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,853 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:39:05] 2026-01-09 11:38:32,853 | INFO     | pilot state: finished 
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | transexitcode: 0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | exeerrorcode: 0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | exeerrordiag: 
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | exitcode: 0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | exitmsg: OK
[2026-01-09 06:39:05] 2026-01-09 11:38:32,854 | INFO     | cpuconsumptiontime: 71835 s
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | nevents: 400
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | neventsw: 0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | pid: 17952
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | pgrp: 17952
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | corecount: 8
[2026-01-09 06:39:05] 2026-01-09 11:38:32,855 | INFO     | event service: False
[2026-01-09 06:39:05] 2026-01-09 11:38:32,856 | INFO     | sizes: {0: 2283969, 6: 2284231, 11: 2284259, 9643: 2312735, 9644: 2312734, 9645: 2321788, 9647: 2321972, 9654: 2322230}
[2026-01-09 06:39:05] 2026-01-09 11:38:32,856 | INFO     | --------------------------------------------------
[2026-01-09 06:39:05] 2026-01-09 11:38:32,856 | INFO     | 
[2026-01-09 06:39:05] 2026-01-09 11:38:32,856 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 06:39:05] 2026-01-09 11:38:32,887 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,887 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,888 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,888 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,888 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,888 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,888 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,889 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,889 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,889 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:39:05] 2026-01-09 11:38:32,890 | INFO     | job 6963145098 has completed (purged errors)
[2026-01-09 06:39:05] 2026-01-09 11:38:32,891 | INFO     | overall cleanup function is called
[2026-01-09 06:39:05] 2026-01-09 11:38:33,898 | INFO     | --- collectZombieJob: --- 10, [17952]
[2026-01-09 06:39:05] 2026-01-09 11:38:33,898 | INFO     | zombie collector waiting for pid 17952
[2026-01-09 06:39:05] 2026-01-09 11:38:33,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:39:05] 2026-01-09 11:38:33,899 | INFO     | collected zombie processes
[2026-01-09 06:39:05] 2026-01-09 11:38:33,899 | INFO     | will attempt to kill all subprocesses of pid=17952
[2026-01-09 06:39:05] 2026-01-09 11:38:33,983 | INFO     | process IDs to be killed: [17952] (in reverse order)
[2026-01-09 06:39:05] 2026-01-09 11:38:34,037 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:39:05] 2026-01-09 11:38:34,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:39:05] 2026-01-09 11:38:34,041 | INFO     | did not find any defunct processes belonging to 17952
[2026-01-09 06:39:05] 2026-01-09 11:38:34,043 | INFO     | did not find any defunct processes belonging to 17952
[2026-01-09 06:39:05] 2026-01-09 11:38:34,044 | INFO     | ready for new job
[2026-01-09 06:39:05] 2026-01-09 11:38:34,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:39:05] 2026-01-09 11:38:34,045 | INFO     | ***************************************
[2026-01-09 06:39:05] 2026-01-09 11:38:34,045 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:39:05] 2026-01-09 11:38:34,045 | INFO     | ***************************************
[2026-01-09 06:39:05] 2026-01-09 11:38:34,046 | INFO     | 
[2026-01-09 06:39:05] 2026-01-09 11:38:34,046 | INFO     | architecture information:
[2026-01-09 06:39:05] 2026-01-09 11:38:34,046 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:39:05] 2026-01-09 11:38:34,064 | INFO     | cat /etc/os-release:
[2026-01-09 06:39:05] NAME="CentOS Linux"
[2026-01-09 06:39:05] VERSION="7 (Core)"
[2026-01-09 06:39:05] ID="centos"
[2026-01-09 06:39:05] ID_LIKE="rhel fedora"
[2026-01-09 06:39:05] VERSION_ID="7"
[2026-01-09 06:39:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:39:05] ANSI_COLOR="0;31"
[2026-01-09 06:39:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:39:05] HOME_URL="https://www.centos.org/"
[2026-01-09 06:39:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:39:05] 
[2026-01-09 06:39:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:39:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:39:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:39:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:39:05] 
[2026-01-09 06:39:05] 2026-01-09 11:38:34,065 | INFO     | ***************************************
[2026-01-09 06:39:05] 2026-01-09 11:38:34,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 06:39:05] 2026-01-09 11:38:34,588 | INFO     | sufficient remaining disk space (18534629376 B)
[2026-01-09 06:39:05] 2026-01-09 11:38:34,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:39:05] 2026-01-09 11:38:34,589 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:39:05] 2026-01-09 11:38:34,589 | INFO     | update_server=False
[2026-01-09 06:39:05] 2026-01-09 11:38:34,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:39:05] 2026-01-09 11:38:34,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:39:05] 2026-01-09 11:38:34,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:39:05] 2026-01-09 11:38:34,791 | INFO     | all job control threads have been joined
[2026-01-09 06:39:05] 2026-01-09 11:38:35,007 | INFO     | all payload control threads have been joined
[2026-01-09 06:39:05] 2026-01-09 11:38:35,078 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 06:39:05] 2026-01-09 11:38:35,078 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 06:39:05] 2026-01-09 11:38:35,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:39:05] 2026-01-09 11:38:35,079 | INFO     | will abort loop
[2026-01-09 06:39:05] 2026-01-09 11:38:35,595 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:35,596 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:35,617 | INFO     | all data control threads have been joined
[2026-01-09 06:39:05] 2026-01-09 11:38:35,728 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:35,796 | INFO     | [job] control thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,013 | INFO     | [payload] control thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,084 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,321 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,323 | INFO     | [job] validate thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,337 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:39:05] 2026-01-09 11:38:36,595 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,623 | INFO     | [data] control thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,640 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,659 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:36,936 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:37,458 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:39:05] 2026-01-09 11:38:40,386 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:45,053 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:39:05] 2026-01-09 11:38:46,058 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:39:05] 2026-01-09 11:38:46,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258160674624)>', '<ExcThread(monitor, started 140257047602944)>']
[2026-01-09 06:39:05] 2026-01-09 11:38:51,121 | INFO     | all workflow threads have been joined
[2026-01-09 06:39:05] 2026-01-09 11:38:51,121 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:39:05] 2026-01-09 11:38:51,121 | INFO     | traces error code: 0
[2026-01-09 06:39:05] 2026-01-09 11:38:51,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:39:05] 2026-01-09 11:39:04,705 | INFO     | PID=11587 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 06:39:05] 2026-01-09 11:39:04,705 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:39:05] 2026-01-09 11:39:04,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:39:05] 2026-01-09 11:39:04,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:39:05] 2026-01-09 11:39:04,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:39:05] 2026-01-09 11:39:04,706 | INFO     | [monitor] control thread has ended
[2026-01-09 06:39:05] 2026-01-09 11:39:04,801 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:39:05] 2026-01-09 11:39:04,806 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:39:05] 2026-01-09 11:39:04,810 [wrapper] pilotpid: 11587
[2026-01-09 06:39:05] 2026-01-09 11:39:04,815 [wrapper] Pilot exit status: 0
[2026-01-09 06:39:05] 2026-01-09 11:39:04,833 [wrapper] pandaids: 6963145098
[2026-01-09 06:39:05] 2026-01-09 11:39:04,881 [wrapper] cleanup supervisor_pilot 19650 11588
[2026-01-09 06:39:05] 2026-01-09 11:39:04,885 [wrapper] Test setup, not cleaning
[2026-01-09 06:39:05] 2026-01-09 11:39:04,890 [wrapper] apfmon messages muted
[2026-01-09 06:39:05] 2026-01-09 11:39:04,895 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:39:05] 2026-01-09 11:39:04,900 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:39:05]  *** Error codes and diagnostics ***
[2026-01-09 06:39:05]     "exeErrorCode": 0,
[2026-01-09 06:39:05]     "exeErrorDiag": "",
[2026-01-09 06:39:05]     "pilotErrorCode": 0,
[2026-01-09 06:39:05]     "pilotErrorDiag": "",
[2026-01-09 06:39:05]  *** Listing of results directory ***
[2026-01-09 06:39:05] total 442648
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 06:39:05] -rwx------ 1 boincer umatlas     36322 Jan  8 10:05 runpilot2-wrapper.sh
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 10:07 queuedata.json
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas       100 Jan  9 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:39:05] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 03:57 run_atlas
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas       105 Jan  9 03:57 job.xml
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas 222434549 Jan  9 03:57 EVNT.47898824._000346.pool.root.1
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 03:57 input.tar.gz
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:57 start_atlas.sh
[2026-01-09 06:39:05] drwxrwx--x 2 boincer umatlas      4096 Jan  9 03:57 shared
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas         0 Jan  9 03:57 boinc_lockfile
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 03:57 pandaJob.out
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas        57 Jan  9 03:57 setup.sh.local
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas    989759 Jan  9 03:57 agis_schedconf.cvmfs.json
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas   1516240 Jan  9 03:57 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:39:05] drwx------ 5 boincer umatlas      4096 Jan  9 03:57 pilot3
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas 223444883 Jan  9 06:37 HITS.47898826._026078.pool.root.1
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas       529 Jan  9 06:38 boinc_task_state.xml
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas      1046 Jan  9 06:38 memory_monitor_summary.json
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas    394749 Jan  9 06:38 log.47898826._026078.job.log.tgz.1
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas        95 Jan  9 06:38 pilot_heartbeat.json
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas      7834 Jan  9 06:38 heartbeat.json
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas      5908 Jan  9 06:38 init_data.xml
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 06:39 boinc_mmap_file
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas        27 Jan  9 06:39 wrapper_checkpoint.txt
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas       745 Jan  9 06:39 pilotlog.txt
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas   1347406 Jan  9 06:39 log.47898826._026078.job.log.1
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas       357 Jan  9 06:39 output.list
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas       620 Jan  9 06:39 runtime_log
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas   1761280 Jan  9 06:39 result.tar.gz
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas      9337 Jan  9 06:39 runtime_log.err
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas       659 Jan  9 06:39 5iaMDmBl6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXXfKDm68ZOun.diag
[2026-01-09 06:39:05] -rw-r--r-- 1 boincer umatlas     21284 Jan  9 06:39 stderr.txt
[2026-01-09 06:39:05] HITS file was successfully produced:
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas 223444883 Jan  9 06:37 shared/HITS.pool.root.1
[2026-01-09 06:39:05]  *** Contents of shared directory: ***
[2026-01-09 06:39:05] total 437752
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas 222434549 Jan  9 03:57 ATLAS.root_0
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas    592400 Jan  9 03:57 input.tar.gz
[2026-01-09 06:39:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:57 start_atlas.sh
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas 223444883 Jan  9 06:37 HITS.pool.root.1
[2026-01-09 06:39:05] -rw------- 1 boincer umatlas   1761280 Jan  9 06:39 result.tar.gz
06:39:06 (7818): run_atlas exited; CPU time 71783.880118
06:39:06 (7818): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN