Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:15:59 (2994150): wrapper (7.7.26015): starting
20:15:59 (2994150): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 20:15:59] Arguments: --nthreads 3
[2026-01-09 20:15:59] Threads: 3
[2026-01-09 20:15:59] Checking for CVMFS
[2026-01-09 20:15:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:15:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:15:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:15:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:15:59] 2.9.2.0 2245490 3077 84624 154955 2 56 34953827 36864000 0 130560 0 1971722 99.987 122134 4506 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:15:59] CVMFS is ok
[2026-01-09 20:15:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:15:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:15:59] Further information can be found at the LHC@home message board.
[2026-01-09 20:15:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:15:59] Checking for apptainer binary...
[2026-01-09 20:15:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:15:59] Running /usr/bin/apptainer --version
[2026-01-09 20:15:59] apptainer version 1.4.1-1.1
[2026-01-09 20:15:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:15:59] thA331a
[2026-01-09 20:15:59] apptainer works
[2026-01-09 20:15:59] Set ATHENA_PROC_NUMBER=3
[2026-01-09 20:15:59] Set ATHENA_CORE_NUMBER=3
[2026-01-09 20:15:59] Starting ATLAS job with PandaID=6963145578
[2026-01-09 20:15:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:12:21]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | job 6963145578 has completed (purged errors)
[2026-01-09 22:12:21] 2026-01-09 21:11:28,570 | INFO     | overall cleanup function is called
[2026-01-09 22:12:21] 2026-01-09 21:11:29,573 | INFO     | --- collectZombieJob: --- 10, [3004307]
[2026-01-09 22:12:21] 2026-01-09 21:11:29,573 | INFO     | zombie collector waiting for pid 3004307
[2026-01-09 22:12:21] 2026-01-09 21:11:29,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:12:21] 2026-01-09 21:11:29,574 | INFO     | collected zombie processes
[2026-01-09 22:12:21] 2026-01-09 21:11:29,574 | INFO     | will attempt to kill all subprocesses of pid=3004307
[2026-01-09 22:12:21] 2026-01-09 21:11:29,615 | INFO     | process IDs to be killed: [3004307] (in reverse order)
[2026-01-09 22:12:21] 2026-01-09 21:11:29,639 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:12:21] 2026-01-09 21:11:29,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:12:21] 2026-01-09 21:11:29,640 | INFO     | did not find any defunct processes belonging to 3004307
[2026-01-09 22:12:21] 2026-01-09 21:11:29,641 | INFO     | did not find any defunct processes belonging to 3004307
[2026-01-09 22:12:21] 2026-01-09 21:11:29,641 | INFO     | ready for new job
[2026-01-09 22:12:21] 2026-01-09 21:11:29,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:12:21] 2026-01-09 21:11:29,642 | INFO     | ***************************************
[2026-01-09 22:12:21] 2026-01-09 21:11:29,642 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:12:21] 2026-01-09 21:11:29,642 | INFO     | ***************************************
[2026-01-09 22:12:21] 2026-01-09 21:11:29,642 | INFO     | 
[2026-01-09 22:12:21] 2026-01-09 21:11:29,642 | INFO     | architecture information:
[2026-01-09 22:12:21] 2026-01-09 21:11:29,643 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:12:21] 2026-01-09 21:11:29,651 | INFO     | cat /etc/os-release:
[2026-01-09 22:12:21] NAME="CentOS Linux"
[2026-01-09 22:12:21] VERSION="7 (Core)"
[2026-01-09 22:12:21] ID="centos"
[2026-01-09 22:12:21] ID_LIKE="rhel fedora"
[2026-01-09 22:12:21] VERSION_ID="7"
[2026-01-09 22:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:12:21] ANSI_COLOR="0;31"
[2026-01-09 22:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:12:21] HOME_URL="https://www.centos.org/"
[2026-01-09 22:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:12:21] 
[2026-01-09 22:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:12:21] 
[2026-01-09 22:12:21] 2026-01-09 21:11:29,651 | INFO     | ***************************************
[2026-01-09 22:12:21] 2026-01-09 21:11:30,154 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | INFO     | sufficient remaining disk space (324648566784 B)
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | INFO     | update_server=False
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:12:21] 2026-01-09 21:11:30,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:12:21] 2026-01-09 21:11:30,168 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:12:21] 2026-01-09 21:11:30,192 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 22:12:21] 2026-01-09 21:11:30,192 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 22:12:21] 2026-01-09 21:11:30,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:12:21] 2026-01-09 21:11:30,192 | INFO     | will abort loop
[2026-01-09 22:12:21] 2026-01-09 21:11:30,238 | INFO     | all data control threads have been joined
[2026-01-09 22:12:21] 2026-01-09 21:11:30,640 | INFO     | all job control threads have been joined
[2026-01-09 22:12:21] 2026-01-09 21:11:30,669 | INFO     | all payload control threads have been joined
[2026-01-09 22:12:21] 2026-01-09 21:11:31,170 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,173 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,175 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,197 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,243 | INFO     | [data] control thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,632 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,645 | INFO     | [job] control thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,675 | INFO     | [payload] control thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,686 | INFO     | [job] validate thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,785 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:31,848 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:32,173 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:32,506 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:32,682 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:34,174 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:11:40,849 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:12:21] 2026-01-09 21:11:41,855 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:12:21] 2026-01-09 21:12:00,259 | INFO     | PID=2997868 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:12:21] 2026-01-09 21:12:00,259 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:12:21] 2026-01-09 21:12:00,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:12:21] 2026-01-09 21:12:00,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:12:21] 2026-01-09 21:12:14,945 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:12:21] 2026-01-09 21:12:16,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936768259904)>', '<ExcThread(monitor, started 139936495802112)>']
[2026-01-09 22:12:21] 2026-01-09 21:12:16,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:12:21] 2026-01-09 21:12:16,337 | INFO     | [monitor] control thread has ended
[2026-01-09 22:12:21] 2026-01-09 21:12:21,325 | INFO     | all workflow threads have been joined
[2026-01-09 22:12:21] 2026-01-09 21:12:21,325 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:12:21] 2026-01-09 21:12:21,325 | INFO     | traces error code: 0
[2026-01-09 22:12:21] 2026-01-09 21:12:21,325 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:12:21] 2026-01-09 21:12:21,375 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:12:21] 2026-01-09 21:12:21,378 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:12:21] 2026-01-09 21:12:21,380 [wrapper] pilotpid: 2997868
[2026-01-09 22:12:21] 2026-01-09 21:12:21,382 [wrapper] Pilot exit status: 0
[2026-01-09 22:12:21] 2026-01-09 21:12:21,389 [wrapper] pandaids: 6963145578
[2026-01-09 22:12:21] 2026-01-09 21:12:21,405 [wrapper] cleanup supervisor_pilot 3018870 2997869
[2026-01-09 22:12:21] 2026-01-09 21:12:21,407 [wrapper] Test setup, not cleaning
[2026-01-09 22:12:21] 2026-01-09 21:12:21,410 [wrapper] apfmon messages muted
[2026-01-09 22:12:21] 2026-01-09 21:12:21,412 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:12:21] 2026-01-09 21:12:21,414 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:12:21]  *** Error codes and diagnostics ***
[2026-01-09 22:12:21]     "exeErrorCode": 0,
[2026-01-09 22:12:21]     "exeErrorDiag": "",
[2026-01-09 22:12:21]     "pilotErrorCode": 0,
[2026-01-09 22:12:21]     "pilotErrorDiag": "",
[2026-01-09 22:12:21]  *** Listing of results directory ***
[2026-01-09 22:12:21] total 438132
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:02 queuedata.json
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 22:12:21] -rwx------ 1 boinc boinc     36322 Jan  8 16:02 runpilot2-wrapper.sh
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:12:21] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:15 run_atlas
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:15 job.xml
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc 223016391 Jan  9 20:15 EVNT.47898824._000353.pool.root.1
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc    592400 Jan  9 20:15 input.tar.gz
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:15 start_atlas.sh
[2026-01-09 22:12:21] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:15 shared
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:15 boinc_setup_complete
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc      6441 Jan  9 20:15 init_data.xml
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:15 boinc_lockfile
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc      2518 Jan  9 20:15 pandaJob.out
[2026-01-09 22:12:21] -rw------- 1 boinc boinc    989364 Jan  9 20:16 agis_schedconf.cvmfs.json
[2026-01-09 22:12:21] -rw------- 1 boinc boinc   1516240 Jan  9 20:16 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:12:21] drwx------ 5 boinc boinc      4096 Jan  9 20:16 pilot3
[2026-01-09 22:12:21] -rw------- 1 boinc boinc 219148336 Jan  9 22:11 HITS.47898826._026261.pool.root.1
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc       529 Jan  9 22:11 boinc_task_state.xml
[2026-01-09 22:12:21] -rw------- 1 boinc boinc      1020 Jan  9 22:11 memory_monitor_summary.json
[2026-01-09 22:12:21] -rw------- 1 boinc boinc    288056 Jan  9 22:11 log.47898826._026261.job.log.tgz.1
[2026-01-09 22:12:21] -rw------- 1 boinc boinc      7765 Jan  9 22:11 heartbeat.json
[2026-01-09 22:12:21] -rw------- 1 boinc boinc        95 Jan  9 22:12 pilot_heartbeat.json
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc      8192 Jan  9 22:12 boinc_mmap_file
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc        27 Jan  9 22:12 wrapper_checkpoint.txt
[2026-01-09 22:12:21] -rw------- 1 boinc boinc      5010 Jan  9 22:12 pilotlog.txt
[2026-01-09 22:12:21] -rw------- 1 boinc boinc    998465 Jan  9 22:12 log.47898826._026261.job.log.1
[2026-01-09 22:12:21] -rw------- 1 boinc boinc       357 Jan  9 22:12 output.list
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc       620 Jan  9 22:12 runtime_log
[2026-01-09 22:12:21] -rw------- 1 boinc boinc   1310720 Jan  9 22:12 result.tar.gz
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc      8902 Jan  9 22:12 runtime_log.err
[2026-01-09 22:12:21] -rw------- 1 boinc boinc       660 Jan  9 22:12 hR1LDm5h6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3ckKDmPDe01m.diag
[2026-01-09 22:12:21] -rw-r--r-- 1 boinc boinc     11945 Jan  9 22:12 stderr.txt
[2026-01-09 22:12:21] HITS file was successfully produced:
[2026-01-09 22:12:21] -rw------- 1 boinc boinc 219148336 Jan  9 22:11 shared/HITS.pool.root.1
[2026-01-09 22:12:21]  *** Contents of shared directory: ***
[2026-01-09 22:12:21] total 433692
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc 223016391 Jan  9 20:15 ATLAS.root_0
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc    592400 Jan  9 20:15 input.tar.gz
[2026-01-09 22:12:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:15 start_atlas.sh
[2026-01-09 22:12:21] -rw------- 1 boinc boinc 219148336 Jan  9 22:11 HITS.pool.root.1
[2026-01-09 22:12:21] -rw------- 1 boinc boinc   1310720 Jan  9 22:12 result.tar.gz
22:12:23 (2994150): run_atlas exited; CPU time 20028.867199
22:12:23 (2994150): called boinc_finish(0)

</stderr_txt>
]]>

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